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Aliases for UMAD1 Gene

Aliases for UMAD1 Gene

  • UBAP1-MVB12-Associated (UMA) Domain Containing 1 2 3 5
  • RPA3 Antisense RNA 1 2 3 4
  • RPA3 Opposite Strand 2 3 4
  • RPA3-AS1 3 4
  • RPA3OS 3 4

External Ids for UMAD1 Gene

Previous HGNC Symbols for UMAD1 Gene

  • RPA3-AS1
  • RPA3OS

Summaries for UMAD1 Gene

GeneCards Summary for UMAD1 Gene

UMAD1 (UBAP1-MVB12-Associated (UMA) Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UMAD1 Gene

Genomics for UMAD1 Gene

Regulatory Elements for UMAD1 Gene

Promoters for UMAD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around UMAD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UMAD1 Gene

Chromosome:
7
Start:
7,640,636 bp from pter
End:
8,004,059 bp from pter
Size:
363,424 bases
Orientation:
Plus strand

Genomic View for UMAD1 Gene

Genes around UMAD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UMAD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UMAD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UMAD1 Gene

Proteins for UMAD1 Gene

  • Protein details for UMAD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9J7I0-UMAD1_HUMAN
    Recommended name:
    UBAP1-MVB12-associated (UMA)-domain containing protein 1
    Protein Accession:
    C9J7I0

    Protein attributes for UMAD1 Gene

    Size:
    102 amino acids
    Molecular mass:
    11180 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UMAD1 Gene

Proteomics data for UMAD1 Gene at MOPED

Post-translational modifications for UMAD1 Gene

No Post-translational modifications

Other Protein References for UMAD1 Gene

No data available for DME Specific Peptides for UMAD1 Gene

Domains & Families for UMAD1 Gene

Protein Domains for UMAD1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

C9J7I0

UniProtKB/Swiss-Prot:

UMAD1_HUMAN :
  • Contains 1 UMA domain.
Domain:
  • Contains 1 UMA domain.
genes like me logo Genes that share domains with UMAD1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for UMAD1 Gene

Function for UMAD1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UMAD1 Gene

Localization for UMAD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UMAD1 Gene

Pathways & Interactions for UMAD1 Gene

SuperPathways for UMAD1 Gene

No Data Available

Interacting Proteins for UMAD1 Gene

Gene Ontology (GO) - Biological Process for UMAD1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UMAD1 Gene

Drugs & Compounds for UMAD1 Gene

No Compound Related Data Available

Transcripts for UMAD1 Gene

mRNA/cDNA for UMAD1 Gene

(3) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UMAD1 Gene

No ASD Table

Relevant External Links for UMAD1 Gene

GeneLoc Exon Structure for
UMAD1
ECgene alternative splicing isoforms for
UMAD1

Expression for UMAD1 Gene

mRNA expression in normal human tissues for UMAD1 Gene

genes like me logo Genes that share expression patterns with UMAD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for UMAD1 Gene

Orthologs for UMAD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for UMAD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RPA3-AS1 36
  • 58 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPA3-AS1 36
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm16039 36
  • 48 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RPA3-AS1 36
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPA3-AS1 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPA3-AS1 36
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:dkey-119m17.2 36
  • 24 (a)
OneToOne
Species with no ortholog for UMAD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for UMAD1 Gene

ENSEMBL:
Gene Tree for UMAD1 (if available)
TreeFam:
Gene Tree for UMAD1 (if available)

Paralogs for UMAD1 Gene

No data available for Paralogs for UMAD1 Gene

Variants for UMAD1 Gene

Sequence variations from dbSNP and Humsavar for UMAD1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10216 -- 7,879,006(+) TCAAA(C/T)ATCTG utr-variant-3-prime
rs10605 -- 7,879,011(+) TATCT(A/G)TGTTA utr-variant-3-prime
rs11456 -- 7,878,961(+) GCAAA(C/T)GTGAA utr-variant-3-prime
rs717297 -- 7,745,416(-) TAGGC(A/C)CACCC intron-variant
rs717298 -- 7,745,409(-) ACCCC(A/G)TAAGG intron-variant

Variation tolerance for UMAD1 Gene

Gene Damage Index Score: 0.69; 14.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UMAD1 Gene

HapMap Linkage Disequilibrium report
UMAD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for UMAD1 Gene

Disorders for UMAD1 Gene

Relevant External Links for UMAD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UMAD1

No disorders were found for UMAD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UMAD1 Gene

Publications for UMAD1 Gene

  1. UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes. (PMID: 20448139) de Souza R.F. … Aravind L. (Bioinformatics 2010) 2 3 67
  2. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z. … Shaffer J.R. (Caries Res. 2014) 3
  3. Genome-wide association study of serious blistering skin rash caused by drugs. (PMID: 21221126) Shen Y. … Pe'er I. (Pharmacogenomics J. 2012) 3
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  5. A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3. (PMID: 21216879) Kaplan R.C. … Wallaschofski H. (Hum. Mol. Genet. 2011) 3

Products for UMAD1 Gene

Sources for UMAD1 Gene

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