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ULK4P2 Gene(Pseudogene)

ULK4 Pseudogene 2

GCID:
GC15P030572
GIFtS:
18
Genes Participants
UDN Logo

Aliases for ULK4P2 Gene

Aliases for ULK4P2 Gene

  • ULK4 Pseudogene 2 2 3 5
  • Family With Sequence Similarity 7, Member A2 2 3
  • Unc-51-Like Kinase 4 (C. Elegans) Pseudogene 2 2
  • Unc-51-Like Kinase 4 (ULK4) Pseudogene 3
  • Unc-51-Like Kinase 4 Pseudogene 2 3
  • FAM7A2 3
  • D-X 3

External Ids for ULK4P2 Gene

Previous HGNC Symbols for ULK4P2 Gene

  • FAM7A2

Previous GeneCards Identifiers for ULK4P2 Gene

  • GC15P030866
  • GC15P030894

Summaries for ULK4P2 Gene

GeneCards Summary for ULK4P2 Gene

ULK4P2 (ULK4 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ULK4P2 Gene

Genomics for ULK4P2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for ULK4P2 Gene

Enhancers for ULK4P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G031279 1 ENCODE dbSUPER 4.5 +707.8 707791 1.2 SOX13 CTCF SAP130 ZSCAN4 MAX RAD21 YY1 ZNF316 GATAD2A SOX5 CHRNA7 KLF13 ULK4P2 LOC283710
GH15G029686 0.9 ENCODE dbSUPER 4.3 -885.1 -885135 1.3 CTCF ZNF316 POLR2A ZNF10 SIN3A HNF4A PRDM4 HNRNPL ULK4P2 LOC105370743 GC15P029720
GH15G031282 0.6 dbSUPER 4.2 +710.7 710717 0.9 ARID1B TCF12 CTCF SMARCA4 TAL1 DPF2 ZNF24 ULK4P2 KLF13 LOC283710
GH15G030579 0.6 Ensembl 0.4 +7.0 6980 1.1 MAZ ZNF366 INSM2 ZEB2 ATF2 ZNF558 SP7 ZBTB17 GC15P030582 ULK4P2
GH15G030566 0.5 Ensembl 0.4 -5.7 -5655 0.2 CTCF NR2F1 IKZF1 RELB ZBTB17 RN7SL796P ULK4P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ULK4P2 on UCSC Golden Path with GeneCards custom track

Promoters for ULK4P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000074408 345 1401 SOX13 FOXA2 RARA ZNF652 MIXL1 SOX5 GATAD2A TEAD1 HLF FOXA3

Genomic Location for ULK4P2 Gene

Chromosome:
15
Start:
30,572,555 bp from pter
End:
30,600,708 bp from pter
Size:
28,154 bases
Orientation:
Plus strand

Genomic View for ULK4P2 Gene

Genes around ULK4P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ULK4P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ULK4P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ULK4P2 Gene

Proteins for ULK4P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ULK4P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ULK4P2 Gene

Domains & Families for ULK4P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ULK4P2 Gene

Function for ULK4P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ULK4P2 Gene

Localization for ULK4P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ULK4P2 Gene

Pathways & Interactions for ULK4P2 Gene

SuperPathways for ULK4P2 Gene

PathCards logo More details on SuperPathways for ULK4P2
No Data Available

Interacting Proteins for ULK4P2 Gene

Gene Ontology (GO) - Biological Process for ULK4P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ULK4P2 Gene

Drugs & Compounds for ULK4P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ULK4P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ULK4P2 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ULK4P2 Gene

Unc-51-like kinase 4 (C. elegans) pseudogene 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ULK4P2 Gene

No ASD Table

Relevant External Links for ULK4P2 Gene

GeneLoc Exon Structure for
ULK4P2
ECgene alternative splicing isoforms for
ULK4P2

Expression for ULK4P2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ULK4P2 Gene

mRNA expression in normal human tissues for ULK4P2 Gene
mRNA expression by GTEx for ULK4P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of ULK4P2 Gene:

ULK4P2

SOURCE GeneReport for Unigene cluster for ULK4P2 Gene:

Hs.642616
genes like me logo Genes that share expression patterns with ULK4P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ULK4P2 Gene

Orthologs for ULK4P2 Gene

Evolution for ULK4P2 Gene

ENSEMBL:
Gene Tree for ULK4P2 (if available)
TreeFam:
Gene Tree for ULK4P2 (if available)

No data available for Orthologs for ULK4P2 Gene

Paralogs for ULK4P2 Gene

No data available for Paralogs for ULK4P2 Gene

Variants for ULK4P2 Gene

Sequence variations from dbSNP and Humsavar for ULK4P2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000345684 -- 32,425,357(+) CACCA(C/T)TCAAG intron-variant
rs1000688810 -- 32,419,653(+) TGTTA(A/T)GGGGG intron-variant
rs1001102007 -- 30,591,849(+) CAAAT(C/G)CCTGG intron-variant
rs1001282735 -- 30,592,311(+) TGGCT(C/G)TGCTG intron-variant
rs1001375483 -- 30,591,294(+) GTCAC(C/T)CAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ULK4P2 Gene

Variant ID Type Subtype PubMed ID
dgv20e213 CNV loss 24956385
dgv2495n100 CNV loss 25217958
dgv2496n100 CNV gain 25217958
dgv2497n100 CNV loss 25217958
dgv2498n100 CNV gain+loss 25217958
dgv2499n100 CNV loss 25217958
dgv2500n100 CNV gain+loss 25217958
dgv2503n100 CNV loss 25217958
dgv2504n100 CNV gain 25217958
dgv2505n100 CNV loss 25217958
dgv2514n100 CNV loss 25217958
dgv2517n100 CNV loss 25217958
dgv2518n100 CNV gain 25217958
dgv2520n100 CNV loss 25217958
dgv2523n100 CNV gain 25217958
dgv2524n100 CNV loss 25217958
dgv2525n100 CNV loss 25217958
dgv2526n100 CNV loss 25217958
dgv2527n100 CNV loss 25217958
dgv2538n100 CNV loss 25217958
dgv2542n100 CNV loss 25217958
dgv2543n100 CNV gain 25217958
dgv2544n100 CNV gain+loss 25217958
dgv2546n100 CNV loss 25217958
dgv2547n100 CNV loss 25217958
dgv2548n100 CNV loss 25217958
dgv30n68 CNV gain+loss 17160897
dgv42e203 CNV gain+loss 21179565
dgv4417n54 CNV loss 21841781
dgv4446n54 CNV loss 21841781
esv1000078 CNV gain 20482838
esv1008245 CNV gain 20482838
esv22947 CNV gain+loss 19812545
esv24159 CNV gain+loss 19812545
esv25154 CNV loss 19812545
esv2751526 CNV loss 17911159
esv2751527 CNV gain 17911159
esv2760022 CNV gain+loss 17122850
esv2760023 CNV gain+loss 17122850
esv2760365 CNV gain+loss 21179565
esv2761877 CNV gain+loss 21179565
esv33337 CNV gain+loss 17666407
esv3584688 CNV loss 24956385
esv3636024 CNV loss 21293372
esv3892661 CNV gain 25118596
nsv1039798 CNV gain 25217958
nsv1040151 CNV gain+loss 25217958
nsv1040778 CNV loss 25217958
nsv1049195 CNV gain 25217958
nsv1049226 CNV gain+loss 25217958
nsv1049639 CNV gain+loss 25217958
nsv1136192 CNV deletion 24896259
nsv1146080 CNV duplication 26484159
nsv1146340 CNV duplication 26484159
nsv1148560 OTHER inversion 26484159
nsv1149653 CNV duplication 26484159
nsv1151327 CNV duplication 26484159
nsv1152775 CNV duplication 26484159
nsv1160250 CNV duplication 26073780
nsv1160251 CNV deletion 26073780
nsv1160252 CNV deletion 26073780
nsv1160257 CNV duplication 26073780
nsv1160270 CNV deletion 26073780
nsv1160272 CNV duplication 26073780
nsv1160277 CNV duplication 26073780
nsv428300 CNV loss 18775914
nsv428302 CNV gain+loss 18775914
nsv433433 CNV gain 18776910
nsv517740 CNV gain+loss 19592680
nsv518720 CNV gain 19592680
nsv568748 CNV loss 21841781
nsv568864 CNV loss 21841781
nsv568908 CNV loss 21841781
nsv821679 CNV gain 15273396
nsv821681 CNV gain 15273396
nsv832946 CNV gain+loss 17160897
nsv832957 CNV gain+loss 17160897
nsv9232 CNV gain+loss 18304495
nsv9238 CNV gain+loss 18304495
nsv952599 CNV deletion 24416366
nsv974545 CNV duplication 23825009
nsv974553 CNV duplication 23825009

Relevant External Links for ULK4P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ULK4P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ULK4P2 Gene

Disorders for ULK4P2 Gene

Relevant External Links for ULK4P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ULK4P2

No disorders were found for ULK4P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ULK4P2 Gene

Publications for ULK4P2 Gene

  1. A 3-Mb map of a large segmental duplication overlapping the alpha7- nicotinic acetylcholine receptor gene (CHRNA7) at human 15q13-q14. (PMID: 11829490) Riley B. … Makoff A. (Genomics 2002) 2 3 64
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ULK4P2 Gene

Sources for ULK4P2 Gene

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