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Aliases for UHRF1BP1 Gene

Aliases for UHRF1BP1 Gene

  • UHRF1 Binding Protein 1 2 3 5
  • Ubiquitin-Like Containing PHD And RING Finger Domains 1-Binding Protein 1 3 4
  • C6orf107 3 4
  • Chromosome 6 Open Reading Frame 107 2
  • UHRF1 (ICBP90) Binding Protein 1 3
  • ICBP90 Binding Protein 1 3
  • ICBP90-Binding Protein 1 4
  • UHRF1-Binding Protein 1 3
  • DJ349A12.1 3
  • ICBP90 3

External Ids for UHRF1BP1 Gene

Previous HGNC Symbols for UHRF1BP1 Gene

  • C6orf107

Previous GeneCards Identifiers for UHRF1BP1 Gene

  • GC06P034869
  • GC06P034763
  • GC06P034482
  • GC06P034866
  • GC06P035772
  • GC06P036302
  • GC06P037288
  • GC06P034962
  • GC06P035513
  • GC06P037747
  • GC06P038371
  • GC06P038961

Summaries for UHRF1BP1 Gene

GeneCards Summary for UHRF1BP1 Gene

UHRF1BP1 (UHRF1 Binding Protein 1) is a Protein Coding gene. GO annotations related to this gene include identical protein binding and histone deacetylase binding. An important paralog of this gene is UHRF1BP1L.

UniProtKB/Swiss-Prot for UHRF1BP1 Gene

  • May act as a negative regulator of cell growth.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UHRF1BP1 Gene

Genomics for UHRF1BP1 Gene

Regulatory Elements for UHRF1BP1 Gene

Enhancers for UHRF1BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G034663 1.9 FANTOM5 Ensembl ENCODE dbSUPER 56.6 -127.6 -127558 3.4 HDGF PKNOX1 ATF1 FOXA2 ARNT YY1 ZNF766 ELK1 CAVIN1 JUNB UHRF1BP1 ENSG00000220643 C6orf106 FANCE HMGA1 GC06M037428 RN7SL200P GC06P041046
GH06G034670 1.6 Ensembl ENCODE dbSUPER 56.6 -118.7 -118708 6.3 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT ZFP64 WRNIP1 ARID4B FEZF1 UHRF1BP1 SMIM29 RN7SL200P GC06M037428 GC06P041046
GH06G034791 1.4 FANTOM5 ENCODE 55.7 +0.3 337 2.7 HDGF FOXA2 CREB3L1 ARNT AGO1 ZFP64 ARID4B SIN3A YBX1 DMAP1 UHRF1BP1 ENSG00000272374 ENSG00000206717
GH06G034679 1.4 Ensembl ENCODE dbSUPER 55.5 -111.2 -111235 2.1 HDGF PKNOX1 ARNT WRNIP1 ZNF121 ELK1 FOS SP3 JUNB TSHZ1 UHRF1BP1 GC06M037428 RN7SL200P GC06P041046
GH06G034608 1.3 Ensembl ENCODE 55.6 -181.7 -181700 2.7 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ZNF2 ZNF143 FOS UHRF1BP1 SPDEF ENSG00000220643 C6orf106 GRM4 ANKS1A TAF11 RPL7P25 GC06P041063
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UHRF1BP1 on UCSC Golden Path with GeneCards custom track

Promoters for UHRF1BP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195988 283 2201 HDGF FOXA2 CREB3L1 ARNT AGO1 ZFP64 ARID4B SIN3A YBX1 DMAP1

Genomic Location for UHRF1BP1 Gene

Chromosome:
6
Start:
34,792,015 bp from pter
End:
34,883,138 bp from pter
Size:
91,124 bases
Orientation:
Plus strand

Genomic View for UHRF1BP1 Gene

Genes around UHRF1BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UHRF1BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UHRF1BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UHRF1BP1 Gene

Proteins for UHRF1BP1 Gene

  • Protein details for UHRF1BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6BDS2-URFB1_HUMAN
    Recommended name:
    UHRF1-binding protein 1
    Protein Accession:
    Q6BDS2
    Secondary Accessions:
    • Q9NXE0

    Protein attributes for UHRF1BP1 Gene

    Size:
    1440 amino acids
    Molecular mass:
    159485 Da
    Quaternary structure:
    • Homodimer (Potential). Interacts with UHRF1.
    SequenceCaution:
    • Sequence=BAA91074.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA.; Evidence={ECO:0000305};

neXtProt entry for UHRF1BP1 Gene

Post-translational modifications for UHRF1BP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UHRF1BP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for UHRF1BP1 Gene

Domains & Families for UHRF1BP1 Gene

Protein Domains for UHRF1BP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for UHRF1BP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with UHRF1BP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for UHRF1BP1 Gene

Function for UHRF1BP1 Gene

Molecular function for UHRF1BP1 Gene

UniProtKB/Swiss-Prot Function:
May act as a negative regulator of cell growth.

Gene Ontology (GO) - Molecular Function for UHRF1BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15361834
GO:0042802 identical protein binding IPI 15361834
GO:0042826 histone deacetylase binding IPI 15361834
genes like me logo Genes that share ontologies with UHRF1BP1: view
genes like me logo Genes that share phenotypes with UHRF1BP1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for UHRF1BP1 Gene

Localization for UHRF1BP1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UHRF1BP1 gene
Compartment Confidence
nucleus 4
cytosol 3
mitochondrion 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for UHRF1BP1 Gene

Pathways & Interactions for UHRF1BP1 Gene

SuperPathways for UHRF1BP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UHRF1BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UHRF1BP1 Gene

Drugs & Compounds for UHRF1BP1 Gene

No Compound Related Data Available

Transcripts for UHRF1BP1 Gene

mRNA/cDNA for UHRF1BP1 Gene

Unigene Clusters for UHRF1BP1 Gene

UHRF1 binding protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UHRF1BP1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18 ^ 19 ^ 20 ^ 21 ^ 22
SP1:
SP2:
SP3:
SP4:
SP5:

Relevant External Links for UHRF1BP1 Gene

GeneLoc Exon Structure for
UHRF1BP1
ECgene alternative splicing isoforms for
UHRF1BP1

Expression for UHRF1BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UHRF1BP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for UHRF1BP1 Gene

This gene is overexpressed in Fetal testis (15.8), Placenta (14.0), and CD8 Tcells (13.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UHRF1BP1 Gene



Protein tissue co-expression partners for UHRF1BP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of UHRF1BP1 Gene:

UHRF1BP1

SOURCE GeneReport for Unigene cluster for UHRF1BP1 Gene:

Hs.700656

Evidence on tissue expression from TISSUES for UHRF1BP1 Gene

  • Liver(4.2)
  • Muscle(2.1)
genes like me logo Genes that share expression patterns with UHRF1BP1: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for UHRF1BP1 Gene

Orthologs for UHRF1BP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for UHRF1BP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UHRF1BP1 34 35
  • 99.58 (n)
dog
(Canis familiaris)
Mammalia UHRF1BP1 34 35
  • 90.2 (n)
cow
(Bos Taurus)
Mammalia UHRF1BP1 34 35
  • 88.92 (n)
rat
(Rattus norvegicus)
Mammalia Uhrf1bp1 34
  • 83.44 (n)
mouse
(Mus musculus)
Mammalia Uhrf1bp1 34 16 35
  • 83.33 (n)
oppossum
(Monodelphis domestica)
Mammalia UHRF1BP1 35
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia UHRF1BP1 35
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves UHRF1BP1 34 35
  • 67.93 (n)
lizard
(Anolis carolinensis)
Reptilia UHRF1BP1 35
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.4421 34
zebrafish
(Danio rerio)
Actinopterygii uhrf1bp1 34 35
  • 57.22 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG34126 35
  • 23 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C44H4.4 35
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 20 (a)
OneToMany
Species where no ortholog for UHRF1BP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for UHRF1BP1 Gene

ENSEMBL:
Gene Tree for UHRF1BP1 (if available)
TreeFam:
Gene Tree for UHRF1BP1 (if available)

Paralogs for UHRF1BP1 Gene

Paralogs for UHRF1BP1 Gene

(3) SIMAP similar genes for UHRF1BP1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with UHRF1BP1: view

Variants for UHRF1BP1 Gene

Sequence variations from dbSNP and Humsavar for UHRF1BP1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000009669 -- 34,824,451(+) TGCTC(A/G)GGAGG intron-variant
rs1000035238 -- 34,800,822(+) TCCCA(G/T)GTGCA intron-variant
rs1000051575 -- 34,852,911(+) GCAGA(A/G)TTCTG intron-variant
rs1000066968 -- 34,877,564(+) TTTAT(A/G)TTGTT downstream-variant-500B
rs1000158913 -- 34,813,047(+) AAAAA(C/T)GGTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UHRF1BP1 Gene

Variant ID Type Subtype PubMed ID
dgv5955n100 CNV gain 25217958
esv2667103 CNV deletion 23128226
esv2763967 CNV gain 21179565
esv3608672 CNV loss 21293372
nsv1016703 CNV loss 25217958
nsv1026121 CNV gain 25217958
nsv1117613 CNV deletion 24896259
nsv1124048 CNV deletion 24896259
nsv462905 CNV gain 19166990
nsv508402 CNV deletion 20534489
nsv602906 CNV gain 21841781

Variation tolerance for UHRF1BP1 Gene

Residual Variation Intolerance Score: 77.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 16.37; 97.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UHRF1BP1 Gene

Human Gene Mutation Database (HGMD)
UHRF1BP1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
UHRF1BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UHRF1BP1 Gene

Disorders for UHRF1BP1 Gene

Relevant External Links for UHRF1BP1

Genetic Association Database (GAD)
UHRF1BP1
Human Genome Epidemiology (HuGE) Navigator
UHRF1BP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UHRF1BP1

No disorders were found for UHRF1BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UHRF1BP1 Gene

Publications for UHRF1BP1 Gene

  1. A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus. (PMID: 19838195) Gateva V. … Graham R.R. (Nat. Genet. 2009) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain. (PMID: 15361834) Unoki M. … Nakamura Y. (Oncogene 2004) 3 4 64
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  5. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3 64

Products for UHRF1BP1 Gene

Sources for UHRF1BP1 Gene

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