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UGT2A2 Gene

protein-coding   GIFtS: 34
GCID: GC04M070455

UDP Glucuronosyltransferase 2 Family, Polypeptide A2

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
UDP Glucuronosyltransferase 2 Family, Polypeptide A21 2
EC 2.4.1.173 8
UDP-Glucuronosyltransferase 2A22
UDPGT 2A13

External Ids:    HGNC: 281831   Entrez Gene: 5745372   Ensembl: ENSG000002712717   UniProtKB: Q9Y4X13   

Export aliases for UGT2A2 gene to outside databases

Previous GC identifers: GC04U900457 GC04M070489


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for UGT2A2 Gene:
UGT2A2 (UDP glucuronosyltransferase 2 family, polypeptide A2) is a protein-coding gene. An important paralog of this gene is UGT1A8.

UniProtKB/Swiss-Prot: UD2A1_HUMAN, Q9Y4X1
Function: UDP-glucuronosyltransferases catalyze phase II biotransformation reactions in which lipophilic
substrates are conjugated with glucuronic acid to increase water solubility and enhance excretion. They are of
major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous
compounds. Active on odorants and seems to be involved in olfaction; it could help clear lipophilic odorant
molecules from the sensory epithelium

Gene Wiki entry for UGT2A2 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the UGT2A2 gene promoter:
         Sox5   oct-B3   STAT5A   Tal-1beta   Cdc5   E47   POU2F1   POU2F1a   HSF2   Hlf   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat UGT2A2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13.3   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

UGT2A2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
UGT2A2 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M070455:  view genomic region     (about GC identifiers)

Start:
70,454,135 bp from pter      End:
70,505,360 bp from pter
Size:
51,226 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: UD2A1_HUMAN, Q9Y4X1 (See protein sequence)
Recommended Name: UDP-glucuronosyltransferase 2A1 precursor  
Size: 527 amino acids; 59926 Da
Caution: According to HGNC, UGT2A1 and UGT2A2 are 2 separate genes. However, they share common exons at the
C-terminus, suggesting that UGT2A1 and UGT2A2 are different isoforms encoded by the same locus
Secondary accessions: B4E2F4 D3GER1 D3GER2 E9PDM7 J3KNA3
Alternative splicing: 5 isoforms:  Q9Y4X1-1   Q9Y4X1-2   Q9Y4X1-3   Q9Y4X1-4   Q9Y4X1-5   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for UGT2A2: NX_Q9Y4X1

Explore proteomics data for UGT2A2 at MOPED

Selected DME Specific Peptides for UGT2A2 (Q9Y4X1) (see all 19)
 AFITHGG  SHWLNVK  LLGHPKT  QYHSLDV 


See UGT2A2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001099147.2  
ENSEMBL proteins: 
 ENSP00000475028   ENSP00000474383   ENSP00000387888  
Reactome Protein details: Q9Y4X1

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
UGT: UDP glucuronosyltransferases

1 InterPro protein domain:
 IPR002213 UDP_glucos_trans

Graphical View of Domain Structure for InterPro Entry Q9Y4X1

ProtoNet protein and cluster: Q9Y4X1

1 Blocks protein domain: IPB002213 UDP-glucoronosyl/UDP-glucosyl transferase

UniProtKB/Swiss-Prot: UD2A1_HUMAN, Q9Y4X1
Similarity: Belongs to the UDP-glycosyltransferase family


Find genes that share domains with UGT2A2           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: UD2A1_HUMAN, Q9Y4X1
Function: UDP-glucuronosyltransferases catalyze phase II biotransformation reactions in which lipophilic
substrates are conjugated with glucuronic acid to increase water solubility and enhance excretion. They are of
major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous
compounds. Active on odorants and seems to be involved in olfaction; it could help clear lipophilic odorant
molecules from the sensory epithelium
Catalytic activity: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside
Biophysicochemical properties: Kinetic parameters: KM=75.4 uM for 3-hydroxybiphenyl; KM=59.5 uM for umbelliferone;
KM=51.6 uM for S-(-)-b-citronellol; KM=170.1 uM for borneol; KM=56.2 uM for testosterone; KM=251 uM for
UDP-glucuronate; Vmax=2.60 nmol/min/mg enzyme with 3-hydroxybiphenyl as substrate; Vmax=0.61 nmol/min/mg enzyme
with umbelliferone as substrate; Vmax=1.98 nmol/min/mg enzyme with S-(-)-b-citronellol as substrate; Vmax=1.05
nmol/min/mg enzyme with borneol as substrate; Vmax=0.25 nmol/min/mg enzyme with testosterone as substrate;

     Enzyme Number (IUBMB): EC 2.4.1.171 2

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0015020glucuronosyltransferase activity ----
GO:0016758transferase activity, transferring hexosyl groups ----
GO:0030246carbohydrate binding ----
     
Find genes that share ontologies with UGT2A2           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
UD2A1_HUMAN, Q9Y4X1: Membrane; Single-pass type I membrane protein (Potential)

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral component of membrane ----

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for UGT2A2 About   (see all 6)  
See pathways by source

SuperPathContained pathways About
1Glucuronidation
Glucuronidation0.61
Starch and sucrose metabolism0.41
Ascorbate and aldarate metabolism0.61
Drug metabolism - other enzymes0.36
Pentose and glucuronate interconversions0.61
2Chemical carcinogenesis
Chemical carcinogenesis0.71
Drug metabolism - cytochrome P4500.69
Metabolism of xenobiotics by cytochrome P4500.71
Retinol metabolism0.35
3Metabolism of porphyrins
Porphyrin and chlorophyll metabolism0.56
4Biological oxidations
metapathway biotransformation0.42
5Metabolism
Metabolic pathways0.38


Find genes that share SuperPaths with UGT2A2           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


2 BioSystems Pathways for UGT2A2
    Glucuronidation
metapathway biotransformation

1 Reactome Pathway for UGT2A2
    Glucuronidation


Selected Kegg Pathways  (Kegg details for UGT2A2) (see all 11):
    Pentose and glucuronate interconversions
Ascorbate and aldarate metabolism
Steroid hormone biosynthesis
Starch and sucrose metabolism
Retinol metabolism

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Interactions:

    Search GeneGlobe Interaction Network for UGT2A2

Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005975carbohydrate metabolic process ----
GO:0007608sensory perception of smell ----
GO:0008152metabolic process ----
GO:0009593detection of chemical stimulus ----
GO:0030259lipid glycosylation ----

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for UGT2A2 (UD2A1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for UGT2A2 gene: 
NM_001105677.2  

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000604629 ENST00000604021 ENST00000457664(uc010ihs.3 uc021xox.1)

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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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UGT2A2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
UGT2A2 Expression
About this image

UGT2A2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

UGT2A2 Protein Expression

UniProtKB/Swiss-Prot: UD2A1_HUMAN, Q9Y4X1
Tissue specificity: Olfactory epithelium and brain. Isoform 2 is mainly expressed in the nasal mucosa

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for UGT2A2 gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ugt2a21 , 5 UDP glucuronosyltransferase 2 family, polypeptide A21, 5 85.21(n)1
85.08(a)1
  5 (43.56 cM)5
5528991  NM_001024148.11  NP_001019319.11 
 874594935 


ENSEMBL Gene Tree for UGT2A2 (if available)
TreeFam Gene Tree for UGT2A2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for UGT2A2 gene
UGT1A82  UGT3A12  UGT1A72  UGT2B112  UGT2B72  UGT1A32  UGT1A12  UGT3A22  
UGT1A52  UGT2B102  UGT2A12  UGT1A102  UGT1A62  UGT82  UGT2B152  UGT2B42  
UGT2A32  UGT2B172  UGT2B282  UGT1A92  UGT1A42  
Selected SIMAP similar genes for UGT2A2 using alignment to 2 protein entries:     S4R3I0_HUMAN (see all proteins) (see all similar genes):
UGT2A1    UGT2B11    UGT2A3    UGT2B17    UGT2B15    UGT2B28
UGT2B4    UGT2B7    UGT1    UGT2B10    UGT1A3S    UGT1A9S
UGT1A1    BILIQTL1    UGT1A6    UGT1A8S    UGT1A9    UGT1A10

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Structural Variations
     Database of Genomic Variants (DGV) Selected variations for UGT2A2 (see all 20):    About this table    
Variant IDTypeSubtypePubMed ID
esv2658506CNV Deletion23128226
dgv93n16CNV Deletion17901297
esv1001272CNV Deletion20482838
dgv659n27CNV Loss19166990
nsv521416CNV Loss19592680
esv24189CNV Loss19812545
nsv499046CNV Loss21111241
nsv511264CNV Loss21212237
nsv461552CNV Loss19166990
nsv514225CNV Loss21397061

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for UGT2A2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with UGT2A2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Human UDP-glucuronosyltransferase UGT2A2: cDNA construction, expression, and functional characterization in comparison with UGT2A1 and UGT2A3. (PubMed id 19858781)1, 2 Sneitz N.... Finel M. (Pharmacogenet. Genomics 2009)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
  3. Cloning and characterization of a novel human olfactory UDP- glucuronosyltransferase. (PubMed id 10359671)1, 2 Jedlitschky G.A.... Burchell B. (Biochem. J. 1999)
  4. Nomenclature update for the mammalian UDP glycosyltransferase (UGT) gene superfamily. (PubMed id 16141793)1, 9 Mackenzie P.I....Nebert D.W. (Pharmacogenet. Genomics 2005)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Toward a complete human genome sequence. (PubMed id 9847074)1 Sulston J.E. and Waterston R. (Genome Res. 1998)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 574537 HGNC: 28183 Ensembl:ENSG00000271271 euGenes: HUgn574537 ECgene: UGT2A2 Kegg: 574537
H-InvDB: UGT2A2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for UGT2A2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for UGT2A2 gene:
Search GeneIP for patents involving UGT2A2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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