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Aliases & Descriptions for UGT1A6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions UDP glucuronosyltransferase 1 family, polypeptide A61 2 UGT1-062 3 GNT11 2 3 UDPGT2 UGT1F1 2 3 UGT1A6S2 HLUGP1 2 UDP-glucuronosyltransferase 1 family polypeptide A6s2 UDP glycosyltransferase 1 family, polypeptide A61 2 UDP-glucuronosyltransferase 1-62 Phenol-metabolizing UDP-glucuronosyltransferase2 3 HLUGP12 UGT1.62 3 MGC298602 UGT12 3 EC 2.4.1.173 UDP-glucuronosyltransferase 1A62 3 UDPGT 1-63 UGT1*62 3 UDP-glucuronosyltransferase 1-F3 UGT-1F2 3
Search outside databases for aliases for UGT1A6 genePrevious GC identifers: GC02U990248 GC02P234819 GC02P234882 GC02P234367 GC02P234382 GC02P234197 GC02P234208 GC02P234217 GC02P234265
Summaries for UGT1A6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for UGT1A6 : This gene encodes a UDP-glucuronosyltransferase, an enzyme of the glucuronidation pathway that transforms small lipophilic molecules, such as steroids, bilirubin, hormones, and drugs, into water-soluble, excretable metabolites. This gene is part of a complex locus that encodes several UDP-glucuronosyltransferases. The locus includes thirteen unique alternate first exons followed by four common exons. Four of the alternate first exons are considered pseudogenes. Each of the remaining nine 5' exons may be spliced to the four common exons, resulting in nine proteins with different N-termini and identical C-termini. Each first exon encodes the substrate binding site, and is regulated by its own promoter. The enzyme encoded by this gene is active on phenolic and planar compounds. Alternative splicing in the unique 5' end of this gene results in two transcript variants. (provided by RefSeq) UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobioticsand endogenous compounds. This isoform has specificity for phenols Gene Wiki entry for UGT1A6
Genomic Views for UGT1A6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UGT1A6 gene upstream (promoter) region :GR-alpha AP-1 HNF-4alpha2 c-Fos c-Jun GR-beta PPAR-gamma1 PPAR-gamma2 p53 COUP-TF1 Epigenetics: Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for UGT1A6 Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q37 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37 UGT1A6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P234600: view genomic region
(about GC identifiers )
Start:
234,600,253 bp from pter
End:
234,681,951 bp from pter
Size:
81,699 bases
Orientation:
plus strand
Proteins for UGT1A6 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 (See
protein sequence )Recommended Name: UDP-glucuronosyltransferase 1-6 precursor Size : 532 amino acids; 60751 Da
Subcellular location : Microsome. Endoplasmic reticulum membrane; Single-pass membrane protein (Potential)
Secondary accessions : Q96TE7Alternative splicing : 1 isoform : P19224-1 (A number of isoforms may be produced. Isoforms have a different N-terminal domain and a common C-terminal domain of 245 residues)
REFSEQ proteins (2 alternative transcripts):
NP_001063.2 NP_995584.1 ENSEMBL proteins: ENSP00000303174 ENSP00000362523 ENSP00000401541 ENSP00000386107 ENSP00000389637 ENSP00000419780 ENSP00000353593 Human Recombinant Proteins 5 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
UGT1A6 for ontologies About GeneDecksing Antibodies for UGT1A6: Assays for UGT1A6:
Protein
Domains/ Families for UGT1A6 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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UGT1A6 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry P19224 ProtoNet protein and cluster: P19224
1 Blocks protein family : IPB002213 UDP-glucoronosyl/UDP-glucosyl transferase UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 Similarity : Belongs to the UDP-glycosyltransferase family
Gene Function for UGT1A6 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobioticsand endogenous compounds. This isoform has specificity for phenols Catalytic activity : UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronosideEnzyme Number (IUBMB): EC 2.4.1.17
2 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0015020 glucuronosyltransferase activity
IEA -- GO:0016758 transferase activity, transferring hexosyl groups
-- --
About this table
UGT1A6 for ontologies About GeneDecksing
Pathways & Interactions for UGT1A6 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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UGT1A6 for pathways About GeneDecksing 3 Millipore Pathways for UGT1A6 5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for UGT1A6 (Your Favorite Gene powered by Ingenuity) (see all 6
)5/10 Kegg Pathways (Kegg details for UGT1A6) (see all 10
): SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UGT1A6 2 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
About this table
UGT1A6 for ontologies About GeneDecksing
Drugs & Compounds for UGT1A6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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UGT1A6 for compounds About GeneDecksing Browse Tocris compounds for UGT1A6 10/169 Novoseek chemical compound relationships for UGT1A6 gene (see all 169
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
p-nitrophenol
80.90
41
8442763 (3), 2858379 (3), 1914788 (3), 8510012 (2) (see all 30 )
1-naphthol
25.80
13
6811722 (2), 19487247 (2), 11317477 (2), 10478938 (2) (see all 9 )
uridine diphosphate
18.29
9
19437564 (2), 3148707 (1), 18161889 (1), 17602169 (1) (see all 8 )
3-methylcholanthrene
18.11
15
6811722 (2), 3924428 (2), 1914788 (2), 11854140 (2) (see all 11 )
acetaminophen
17.95
22
2116803 (5), 17164591 (3), 8510012 (2), 11903872 (2) (see all 12 )
tcdd
17.01
18
10220484 (4), 8068691 (3), 19474220 (3), 6428382 (2) (see all 10 )
4-methylumbelliferone
15.83
8
9914163 (1), 9429234 (1), 18214896 (1), 17027947 (1) (see all 8 )
beta-naphthoflavone
12.97
9
3924428 (3), 16545899 (3), 1914788 (1), 11437649 (1) (see all 5 )
5-hydroxytryptophol
10.90
5
15258112 (5)
deferiprone
10.19
6
18318774 (5), 18971318 (1)
About this table 2 PharmGKB drug compound relationships for UGT1A6 gene About this table
Transcripts for UGT1A6 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_001072 NM_205862 Clones: Origene GFP tagged cDNA clones in CMV expression vector (see all 2 ): UGT1A6 Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): UGT1A6 Origene untagged cDNA clones in CMV expression vector (see all 2 ): UGT1A6
Primers: Origene genome-wide validated SYBR primer pairs: UGT1A6 SABiosciences RT2 qPCR Primer Assay for UGT1A6: PPH01713A
REFSEQ mRNAs for UGT1A6 gene (2 alternative transcripts): NM_001072.3 NM_205862.1
24/271 AceView cDNA sequences (see all 271
):
NM_000463 BE464379 AV646429 AY435138 AY435143 BE464186 AW297730 CB162031 AI566081 AY435139 NM_019078 AI913618 AY435144 BM829535 NM_019093 AK025403 BC043491 AY435140 BE463503 NM_205862 BC053576 AY435136 NM_019077 AI479279
highest scoring ESTs for UGT1A6 :AI439491 AI769507 AI984823 AA405907 AA586566 AI244386 AI244717 AI244891 AI253019 AI282087 GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for UGT1A6 (see all 11
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c SP1 :       -   -   -   -   -   -   -   -   -   -   -         -         SP2 :                 -   -   -   -   -   -         -         SP3 :   -   -   -   -   -   -   -   -   -   -   -   -   -         -         SP4 :                   -   -   -   -   -         -         SP5 :                     -   -   -   -         -        
About this scheme ECgene alternative splicing isoforms for UGT1A6 9 Ensembl transcripts including schematic representations : ENST00000305139
ENST00000480628
ENST00000373424
ENST00000446481
ENST00000406651
ENST00000478062
ENST00000441351
ENST00000484784
ENST00000360418
Expression for UGT1A6 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback UGT1A6 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UGT1A6 1 / 2 / 3
7 probe-sets matching UGT1A6 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
32392_s_at2 , 3
U95-A
9
1.00
0.15
1.00
1.00
M57951
0.60
0.06
0.43
2
208596_s_at2 , 3
U133-A
9
1.00
0.13
--
--
NM_019093
0.20
0.04
0.14
2
232654_s_at2 , 3
U133-B
1
0.91
1.00
--
--
BE873420
0.40
0.37
0.39
1
215125_s_at2 , 3
U133-A
9
0.82
0.12
--
--
AV691323
0.20
0.06
0.15
2
208596_s_at2
U133Plus2
9
1.00
0.13
--
--
--
--
--
--
--
232654_s_at2
U133Plus2
1
0.91
1.00
--
--
--
--
--
--
--
215125_s_at2
U133Plus2
9
0.82
0.12
--
--
--
--
--
--
--
About this table
UGT1A6 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 Tissue specificity : Expressed in skin, kidney and liver
Primers: Origene genome-wide validated SYBR primer pairs: UGT1A6 SABiosciences RT2 qPCR Primer Assay for UGT1A6: PPH01713A
Orthologs for UGT1A6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UGT1A6 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for UGT1A6 ENSEMBL Gene Tree for UGT1A6 Paralogs for UGT1A6 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for UGT1A6 gene UGT1A8 2 UGT3A1 2 UGT1A7 2 UGT2B7 2 UGT2B11 2 UGT1A3 2 ENSG00000215111 2 UGT1A1 2 UGT1A5 2 UGT3A2 2 UGT2A1 2 UGT2B10 2 UGT1A10 2 ENSG00000215110 2 UGT8 2 UGT2B15 2 UGT2B4 2 UGT2A3 2 UGT2B17 2 UGT2B28 2 UGT1A9 2 UGT1A4 2
UGT1A6 for paralogs About GeneDecksing
Genomic Variants for UGT1A6 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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User Feedback UniProtKB/Swiss-Prot: UD16_HUMAN, P19224 Polymorphism : Polymorphisms in the UGT1A6 gene define four common haplotypes: UGT1A6*1, UGT1A6*2, UGT1A6*3 andUGT1A6*4. Liver tissue samples that were homozygous for UGT1A6*2 exhibited a high rate of glucuronidation relative to tissues with other genotypes. Biochemical kinetic studies indicate that the UGT1A6*2 allozyme, expressed homozygously, had almost two-fold greater activity toward p-nitrophenol than UGT1A6*1 and when expressed heterozygously (UGT1A6*1/*2) it is associated with low enzyme activity. Common genetic variation in UGT1A6 confers functionally significant differences in biochemical phenotype. This genetic variation might impact clinical efficacy or toxicity of drugs metabolized by UGT1A6 Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 10 variations for UGT1A6 10 CNVs : 90342 90341 61892 35795 50416 39282 37520 39281 63332 90340
Disorders & Mutations for UGT1A6 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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UGT1A6 for disorders About GeneDecksing
OMIM: 606431 10/30 Novoseek disease relationships for UGT1A6 gene (see all 30
)
About this table 1 PharmGKB disease relationship for UGT1A6 gene About this table Human Gene Mutation Database : UGT1A6 Genetic Association Database: UGT1A6 Human Genome Epidemiology Navigator: UGT1A6 (42 documents)
Medical News for UGT1A6 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for UGT1A6 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/178 PubMed articles for UGT1A6 gene (see all 178
): Human UGT1A6 pharmacogenetics: identification of a novel SNP, characterization of allele frequencies and functional analysis of recombinant allozymes in human liver tissue and in cultured cells. (PubMed id 15284531) 1, 3 , 4 , 6, 7 Nagar S.... Blanchard R.L. (2004) Genetic variants in the UGT1A6 enzyme, aspirin use, and the risk of colorectal adenoma. (PubMed id 15770010) 1, 3 , 6, 7 Chan A.T....Fuchs C.S. (2005) A novel complex locus UGT1 encodes human bilirubin, phenol, and other UDP-glucuronosyltransferase isozymes with identical carboxyl termini. (PubMed id 1339448) 2, 3 , 4 Ritter J.K....Owens I.S. (1992) UDP glucuronosyltransferase (UGT) 1A6 pharmacogenetics: I. Identification of polymorphisms in the 5'-regulatory and exon 1 regions, and association with human liver UGT1A6 gene expression and glucuronidation. (PubMed id 15761114) 1, 3 , 6 Krishnaswamy S....Court M.H. (2005) Functional polymorphisms of UDP-glucuronosyltransferases 1A1, 1A6 and 1A8 are not involved in chronic pancreatitis. (PubMed id 15247627) 1, 3 , 6 Verlaan M....Drenth J.P. (2004) Analysis of inherited genetic variations at the UGT1 locus in the French-Canadian population. (PubMed id 19204906) 1, 3 , 4 MAcnard V....Guillemette C. (2009) Urinary excretion of phenytoin metabolites, 5-(4'-hydroxyphenyl)-5-phenylhydantoin and its O-glucuronide in humans and analysis of genetic polymorphisms of UDP-glucuronosyltransferases. (PubMed id 15855726) 1, 3 , 6 Yamanaka H....Yokoi T. (2005) Genetic polymorphisms in UDP-glucuronosyltransferases and glutathione S-transferases and colorectal cancer risk. (PubMed id 15319294) 1, 3 , 6 van der Logt E.M....Peters W.H. (2004) Aryl hydrocarbon receptor-inducible or constitutive expression of human UDP glucuronosyltransferase UGT1A6. (PubMed id 9466822) 1, 3 , 4 Muenzel P.A.... Bock K.W. (1998) Genetic polymorphism in the human UGT1A6 (planar phenol) UDP- glucuronosyltransferase: pharmacological implications. (PubMed id 9429234) 1, 3 , 4 Ciotti M.... Owens I.S. (1997)
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