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Aliases & Descriptions for UGT1A4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.4.1.17 3 GNT1 3 HUG-BR2 1 , 2 , 3 UDP-glucuronosyltransferase 2 UDPGT 2 , 3 UGT-1D 3 UGT1 3 UGT1*4 3 UGT1-04 3 UGT1.4 3 UGT1D 1 , 2 , 3 , 5
Descriptions Bilirubin-specific UDPGT isozyme 2 3 UDP glucuronosyltransferase 1 family, polypeptide A4 2 UDP glycosyltransferase 1 family, polypeptide A4 1 , 2 UDP-glucuronosyltransferase 1A4 3 bilirubin UDP-glucuronosyltransferase isozyme 2 2
Search outside databases for aliases for UGT1A4 genePrevious GC identifers: GC02U990252 GC02P234817 GC02P234880 GC02P234365 GC02P234409 GC02P234195 GC02P234205
Summaries for UGT1A4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UGT1A4 : This gene encodes a UDP-glucuronosyltransferase, an enzyme of the glucuronidation pathway thattransforms small lipophilic molecules, such as steroids, bilirubin, hormones, and drugs, intowater-soluble, excretable metabolites. This gene is part of a complex locus that encodes severalUDP-glucuronosyltransferases. The locus includes thirteen unique alternate first exons followed byfour common exons. Four of the alternate first exons are considered pseudogenes. Each of theremaining nine 5' exons may be spliced to the four common exons, resulting in nine proteinswith different N-termini and identical C-termini. Each first exon encodes the substrate bindingsite, and is regulated by its own promoter. This enzyme has some glucuronidase activity towardsbilirubin, although is is more active on amines, steroids, and sapogenins. [provided by RefSeq] UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentiallytoxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to formboth the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate
Gene Wiki entry for UGT1A4
Genomic Location for UGT1A4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UGT1A4 gene Entrez Gene cytogenetic band: 2q37 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37 UGT1A4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P234215:
(about GC identifiers )
Start:
234,191,093 bp from pter
End:
234,346,688 bp from pter
Size:
155,596 bases
Orientation:
plus strand
Proteins for UGT1A4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 (See
protein sequence )Recommended Name: UDP-glucuronosyltransferase 1-4 precursor Size : 534 amino acids; 60025 Da
Subcellular location : Microsome. Endoplasmic reticulum membrane; Single-pass membrane protein(Potential) Alternative splicing : 1 isoform : P22310-1 (A number of isoforms are produced. The different isozymes have a different N-terminal domain and a common C-terminal domain of 245 residues)
REFSEQ proteins: NP_009051.1 ENSEMBL proteins: ENSP00000343838 ENSP00000362549 ENSP00000362544 ENSP00000346768 ENSP00000362559 ENSP00000362525 ENSP00000303174 ENSP00000353593 ENSP00000362523 ENSP00000386107 ENSP00000362513 ENSP00000327082 ENSP00000362508 ENSP00000304845 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UGT1A4: Assays for UGT1A4:
Protein
Domains/ Families for UGT1A4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P22310 ProtoNet protein and cluster: P22310
1 Blocks protein family : IPB002213 UDP-glucoronosyl/UDP-glucosyl transferase UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Similarity : Belongs to the UDP-glycosyltransferase family
Gene Function for UGT1A4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007120 Applied Biosystems Silencer ® siRNAs for UGT1A4 Sigma-Aldrich siRNA for UGT1A4 Sigma-Aldrich shRNA for UGT1A4 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_007120                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_007120                                  untagged cDNA clone in CMV expression vector: NM_007120  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_007120 UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Function : UDPGT is of major importance in the conjugation and subsequent elimination of potentiallytoxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to formboth the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate Catalytic activity : UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronosideInduction : By phenobarbitalEnzyme Number (IUBMB): EC 2.4.1.17
1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0015020 glucuronosyltransferase activity
IEA --
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Pathways & Interactions for UGT1A4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for UGT1A4 (Your Favorite Gene powered by Ingenuity) (see all 6
) 5/106 Interacting proteins for UGT1A4 (ENSP00000362513 3 ) via UniProtKB, MINT, and/or STRING (see all 106
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008152 metabolic process
IEA --
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Drugs & Compounds for UGT1A4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for UGT1A4:Inhibitor
Browse Tocris compounds for UGT1A4 10/13 Novoseek chemical compound relationships for UGT1A4 gene (see all 13
)
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Transcripts for UGT1A4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007120 Sigma-Aldrich siRNA for UGT1A4 Sigma-Aldrich shRNA for UGT1A4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_007120
REFSEQ mRNAs for UGT1A4 gene: NM_007120.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_007120
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_007120                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_007120                                  untagged cDNA clone in CMV expression vector: NM_007120  
24/271 AceView cDNA sequences (see all 271
):AY435143 NM_019077 AY435144 NM_019075 AK025403 BC053576 NM_000463 NM_019093 AI767337 AV660038 AY435138 AV650286 NM_001072 BE463503 AW297730 NM_019078 AV646429 CB162031 NM_007120 AI701383 NM_019076 AY435136 BE464186 AI913618
highest scoring ESTs for UGT1A4 :AA088507 AA088506 BQ327579 T61402 T73284 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for UGT1A4 (see all 11
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c SP1 :       -   -   -   -   -   -   -   -   -   -   -         -         SP2 :                 -   -   -   -   -   -         -         SP3 :   -   -   -   -   -   -   -   -   -   -   -   -   -         -         SP4 :                   -   -   -   -   -         -         SP5 :                     -   -   -   -         -        
About this scheme ECgene alternative splicing isoforms for UGT1A4 14 Ensembl transcripts including schematic representations : ENST00000344644
ENST00000373450
ENST00000373445
ENST00000354728
ENST00000373460
ENST00000373426
ENST00000305139
ENST00000360418
ENST00000373424
ENST00000406651
ENST00000373414
ENST00000318990
ENST00000373409
ENST00000305208
Expression for UGT1A4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UGT1A4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UGT1A4 1 / 2 / 3
11 probe-sets matching UGT1A4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --UniProtKB/Swiss-Prot: UD14_HUMAN, P22310 Tissue specificity : Expressed in liver. Not expressed in skin or kidney
Orthologs for UGT1A4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UGT1A4 gene from 4 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
rat (Rattus norvegicus)
Ugt1a51
--
UDP glucuronosyltransferase 1 family, polypeptide A5
80.31(n) 76.98(a)
574523 NM_001039549.1 NP_001034638.1
mouse (Mus musculus)
Ugt1a51
--
UDP glucuronosyltransferase 1 family, polypeptide A5
78.28(n) 76.52(a)
394433 NM_201643.1 NP_964005.1
fruit fly (Drosophila melanogaster)
Ugt36Ba3
36B1
glucuronosyltransferase
30(a) (best of 8)
--
worm (Caenorhabditis elegans)
C10H11.53
I(4724067-4726765)
--
29(a) (best of 18)
--
About this table Species with no ortholog for UGT1A4 ENSEMBL Gene Tree for UGT1A4 Paralogs for UGT1A4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for UGT1A4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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--
Disorders & Mutations for UGT1A4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606429 UniProtKB/Swiss-Prot: UD14_HUMAN, P22310
The Gilbert syndrome is shown to occur as a consequence of reduced bilirubin transferaseactivity. The disorder, is most often detected in young adults with vague nonspecific complaints.A more severe inheritable deficiency in bilirubin activity exist in Crigler-Najjar (CN): patientswith type I (recessive trait) have severe hyperbilirubinemia and usually die of kernicterus(bilirubin accumulation in the basal ganglia and brainstem nuclei) within the first year of life.Patients with type II (dominant trait) have less severe hyperbilirubinemia and usually surviveinto adulthood without neurologic damage. Phenobarbital, which induces the partially deficientglucuronyl transferase, can diminish the jaundice
2 Novoseek disease relationships for UGT1A4 gene
About this table Human Gene Mutation Database : UGT1A4 Genetic Association Database: UGT1A4 Human Genome Epidemiology Navigator: UGT1A4 (12 documents)
Medical News for UGT1A4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UGT1A4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/85 PubMed articles for UGT1A4 gene (see all 85
): A novel complex locus UGT1 encodes human bilirubin, phenol, and other UDP-glucuronosyltransferase isozymes with identical carboxyl termini. (PubMed id 1339448) 2, 3, 4 Ritter J.K....Owens I.S. (1992) UDP-glucuronosyltransferase 1A4 polymorphisms in a Japanese population and kinetics of clozapine glucuronidation. (PubMed id 15708967) 1, 3, 6 Mori A....Takeuchi Y. (2005) Identification of defect in the genes for bilirubin UDP-glucuronosyl- transferase in a patient with Crigler-Najjar syndrome type II. (PubMed id 8280139) 1, 3, 4 Aono S.... Koiwai O. (1993) Cloning of two human liver bilirubin UDP-glucuronosyltransferase cDNAs with expression in COS-1 cells. (PubMed id 1898728) 1, 3, 4 Ritter J.K.... Owens I.S. (1991) Variation of hepatic glucuronidation: Novel functional polymorphisms of the UDP-glucuronosyltransferase UGT1A4. (PubMed id 15057901) 1, 3, 6 Ehmer U....Strassburg C.P. (2004) Urinary excretion of phenytoin metabolites, 5-(4'-hydroxyphenyl)-5-phenylhydantoin and its O-glucuronide in humans and analysis of genetic polymorphisms of UDP-glucuronosyltransferases. (PubMed id 15855726) 1, 3, 6 Yamanaka H....Yokoi T. (2005) Genetic variations and haplotypes of UGT1A4 in a Japanese population. (PubMed id 15855727) 3, 6 Saeki M....Sawada J. (2005) Correlation between UDP-glucuronosyltransferase genotypes and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone glucuronidation phenotype in human liver microsomes. (PubMed id 14871856) 3, 6 Wiener D....Lazarus P. (2004) Thirteen UDPglucuronosyltransferase genes are encoded at the human UGT1 gene complex locus. (PubMed id 11434514) 3, 4 Gong Q.H....Popescu N.C. (2001) The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence. (PubMed id 9295054) 2, 3 Mackenzie P.I....Nebert D.W. (1997)
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Genome Databases showing UGT1A4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UGT1A4
(According to HUGE )
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--
Specialized Databases showing UGT1A4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UGT1A4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for UGT1A4:
Search Tocris compounds for UGT1A4
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Proteins for UGT1A4
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SNPs for UGT1A4
Search Box for UGT1A4
Services for UGT1A4
Summaries for UGT1A4
Technologies for UGT1A4
Transcripts for UGT1A4
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009