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Aliases for UGDH-AS1 Gene

Subcategory (RNA class) for UGDH-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UGDH-AS1 Gene

  • UGDH Antisense RNA 1 2 3 5
  • UGDH Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UGDH-AS1 Gene

Summaries for UGDH-AS1 Gene

GeneCards Summary for UGDH-AS1 Gene

UGDH-AS1 (UGDH Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UGDH-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UGDH-AS1 Gene

Genomics for UGDH-AS1 Gene

GeneHancer (GH) Regulatory Elements for UGDH-AS1 Gene

Promoters and enhancers for UGDH-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I039525 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 559.8 -0.1 -75 4.1 HDGF PKNOX1 CLOCK FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 UGDH-AS1 UGDH LOC105374419 SMIM14 RPL9 GC04M039495
GH04I039456 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 -69.3 -69305 3.7 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 RPL9 LIAS PDS5A WDR19 ENSG00000250568 RFC1 KLF3-AS1 FAM114A1 UGDH-AS1 KLF3
GH04I040189 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.4 +672.3 672300 22 HDGF PKNOX1 FOXA2 SMAD1 ARNT SIN3A IRF4 YY1 POLR2B ZNF766 RHOH PDS5A N4BP2 RFC1 RBM47 LOC344967 ENSG00000250568 CHRNA9 ENSG00000250906 UGDH-AS1
GH04I038752 Enhancer 1.1 Ensembl ENCODE 9.9 -774.7 -774673 2.3 HDGF YBX1 ZNF143 ATF7 FOS RUNX3 SP3 JUNB REST ZNF184 RFC1 WDR19 HNRNPRP3 KLF3-AS1 UGDH-AS1 TLR1 ENSG00000271958 TLR6 LOC105374412 RNA5SP158
GH04I040295 Enhancer 0.8 dbSUPER 12.9 +767.9 767868 1.3 HDGF HDAC1 NFRKB PLRG1 YBX1 ZBTB40 ZNF23 ZNF207 ZNF680 YY2 PDS5A RFC1 N4BP2 ZBTB12BP UGDH-AS1 ENSG00000250568 APBB2 ENSG00000250906 CHRNA9 LOC344967
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UGDH-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UGDH-AS1 Gene

Genomic Locations for UGDH-AS1 Gene
chr4:39,527,839-39,594,707
(GRCh38/hg38)
Size:
66,869 bases
Orientation:
Plus strand
chr4:39,529,639-39,596,327
(GRCh37/hg19)

Genomic View for UGDH-AS1 Gene

Genes around UGDH-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UGDH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UGDH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UGDH-AS1 Gene

Proteins for UGDH-AS1 Gene

Post-translational modifications for UGDH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UGDH-AS1 Gene

Domains & Families for UGDH-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UGDH-AS1 Gene

Function for UGDH-AS1 Gene

Phenotypes From GWAS Catalog for UGDH-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UGDH-AS1 Gene

Localization for UGDH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UGDH-AS1 Gene

Pathways & Interactions for UGDH-AS1 Gene

SuperPathways for UGDH-AS1 Gene

No Data Available

Interacting Proteins for UGDH-AS1 Gene

Gene Ontology (GO) - Biological Process for UGDH-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UGDH-AS1 Gene

Drugs & Compounds for UGDH-AS1 Gene

No Compound Related Data Available

Transcripts for UGDH-AS1 Gene

mRNA/cDNA for UGDH-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UGDH-AS1 Gene

UGDH antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UGDH-AS1 Gene

No ASD Table

Relevant External Links for UGDH-AS1 Gene

GeneLoc Exon Structure for
UGDH-AS1
ECgene alternative splicing isoforms for
UGDH-AS1

Expression for UGDH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UGDH-AS1 Gene

SOURCE GeneReport for Unigene cluster for UGDH-AS1 Gene:

Hs.640769
genes like me logo Genes that share expression patterns with UGDH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UGDH-AS1 Gene

Orthologs for UGDH-AS1 Gene

Evolution for UGDH-AS1 Gene

ENSEMBL:
Gene Tree for UGDH-AS1 (if available)
TreeFam:
Gene Tree for UGDH-AS1 (if available)

No data available for Orthologs for UGDH-AS1 Gene

Paralogs for UGDH-AS1 Gene

No data available for Paralogs for UGDH-AS1 Gene

Variants for UGDH-AS1 Gene

Sequence variations from dbSNP and Humsavar for UGDH-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000003913 -- 39,545,966(+) A/G intron_variant
rs1000070010 -- 39,532,232(+) G/A intron_variant
rs1000145978 -- 39,536,458(+) A/G intron_variant
rs1000215218 -- 39,582,422(+) T/C intron_variant
rs1000319693 -- 39,589,367(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for UGDH-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2658556 CNV deletion 23128226
esv2672331 CNV deletion 23128226
esv2678557 CNV deletion 23128226
esv2762428 CNV loss 21179565
esv3563735 CNV deletion 23714750
esv3600285 CNV loss 21293372
esv3600286 CNV loss 21293372
esv3600287 CNV loss 21293372
nsv1010784 CNV gain 25217958
nsv1161080 CNV deletion 26073780
nsv441869 CNV loss 18776908
nsv478919 CNV novel sequence insertion 20440878
nsv514208 CNV loss 21397061
nsv997937 CNV gain 25217958

Additional Variant Information for UGDH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UGDH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UGDH-AS1 Gene

Disorders for UGDH-AS1 Gene

Additional Disease Information for UGDH-AS1

No disorders were found for UGDH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UGDH-AS1 Gene

Publications for UGDH-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for UGDH-AS1 Gene

Sources for UGDH-AS1 Gene

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