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Aliases for UGDH-AS1 Gene

Subcategory (RNA class) for UGDH-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UGDH-AS1 Gene

  • UGDH Antisense RNA 1 2 3 5
  • UGDH Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UGDH-AS1 Gene

Summaries for UGDH-AS1 Gene

GeneCards Summary for UGDH-AS1 Gene

UGDH-AS1 (UGDH Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UGDH-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UGDH-AS1 Gene

Genomics for UGDH-AS1 Gene

Regulatory Elements for UGDH-AS1 Gene

Enhancers for UGDH-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H039456 1.4 ENCODE dbSUPER 10 -69.3 -69310 3 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF302 ZNF207 RPL9 PDS5A WDR19 ENSG00000250568 RFC1 KLF3-AS1 FAM114A1 UGDH-AS1 KLF3 LOC401127
GH04H038752 1.2 Ensembl ENCODE 9.9 -774.7 -774674 2 YBX3 HDGF ZSCAN4 KLF17 YBX1 BATF EGR1 FOS ATF7 ETV6 RFC1 WDR19 HNRNPRP3 KLF3-AS1 UGDH-AS1 TLR1 ENSG00000271958 TLR6 LOC105374412 RNA5SP158
GH04H039514 1.3 Ensembl ENCODE 8.5 -12.6 -12628 1 FOXA2 ATF1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 FOS KLF7 LOC105374419 SMIM14 UGDH-AS1 LOC401127 UGDH RPL9 GC04M039495
GH04H040189 2 FANTOM5 Ensembl ENCODE dbSUPER 5.4 +672.3 672300 22 HDGF PKNOX1 FOXA2 ARNT SIN3A YY1 ZNF766 ZNF207 FOS JUNB PDS5A N4BP2 RFC1 RBM47 LOC344967 ENSG00000250568 CHRNA9 ENSG00000250906 RHOH UGDH-AS1
GH04H039525 1.1 ENCODE 9.8 -0.1 -75 4 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 SMIM14 LOC105374419 UGDH-AS1 UGDH RPL9 GC04M039495
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UGDH-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UGDH-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000167632 -438 3200 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for UGDH-AS1 Gene

Chromosome:
4
Start:
39,527,839 bp from pter
End:
39,594,707 bp from pter
Size:
66,869 bases
Orientation:
Plus strand

Genomic View for UGDH-AS1 Gene

Genes around UGDH-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UGDH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UGDH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UGDH-AS1 Gene

Proteins for UGDH-AS1 Gene

Post-translational modifications for UGDH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UGDH-AS1 Gene

Domains & Families for UGDH-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UGDH-AS1 Gene

Function for UGDH-AS1 Gene

Phenotypes From GWAS Catalog for UGDH-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UGDH-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UGDH-AS1 Gene

Localization for UGDH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UGDH-AS1 Gene

Pathways & Interactions for UGDH-AS1 Gene

SuperPathways for UGDH-AS1 Gene

No Data Available

Interacting Proteins for UGDH-AS1 Gene

Gene Ontology (GO) - Biological Process for UGDH-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UGDH-AS1 Gene

Drugs & Compounds for UGDH-AS1 Gene

No Compound Related Data Available

Transcripts for UGDH-AS1 Gene

mRNA/cDNA for UGDH-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UGDH-AS1 Gene

UGDH antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UGDH-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for UGDH-AS1 Gene

No ASD Table

Relevant External Links for UGDH-AS1 Gene

GeneLoc Exon Structure for
UGDH-AS1
ECgene alternative splicing isoforms for
UGDH-AS1

Expression for UGDH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UGDH-AS1 Gene

SOURCE GeneReport for Unigene cluster for UGDH-AS1 Gene:

Hs.640769
genes like me logo Genes that share expression patterns with UGDH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UGDH-AS1 Gene

Orthologs for UGDH-AS1 Gene

Evolution for UGDH-AS1 Gene

ENSEMBL:
Gene Tree for UGDH-AS1 (if available)
TreeFam:
Gene Tree for UGDH-AS1 (if available)

No data available for Orthologs for UGDH-AS1 Gene

Paralogs for UGDH-AS1 Gene

No data available for Paralogs for UGDH-AS1 Gene

Variants for UGDH-AS1 Gene

Sequence variations from dbSNP and Humsavar for UGDH-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000003913 -- 39,545,966(+) TAGCC(A/G)GGCGC intron-variant
rs1000070010 -- 39,532,232(+) GCATG(A/G)TGGTG intron-variant
rs1000145978 -- 39,536,458(+) CCAGC(A/G)AGTGA intron-variant
rs1000215218 -- 39,582,422(+) CACTT(C/T)GGGAA intron-variant
rs1000319693 -- 39,589,367(+) CAGGC(A/G)TGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UGDH-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2658556 CNV deletion 23128226
esv2672331 CNV deletion 23128226
esv2678557 CNV deletion 23128226
esv2762428 CNV loss 21179565
esv3563735 CNV deletion 23714750
esv3600285 CNV loss 21293372
esv3600286 CNV loss 21293372
esv3600287 CNV loss 21293372
nsv1010784 CNV gain 25217958
nsv1161080 CNV deletion 26073780
nsv441869 CNV loss 18776908
nsv478919 CNV novel sequence insertion 20440878
nsv514208 CNV loss 21397061
nsv997937 CNV gain 25217958

Relevant External Links for UGDH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UGDH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UGDH-AS1 Gene

Disorders for UGDH-AS1 Gene

Relevant External Links for UGDH-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UGDH-AS1

No disorders were found for UGDH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UGDH-AS1 Gene

Publications for UGDH-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for UGDH-AS1 Gene

Sources for UGDH-AS1 Gene

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