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Aliases for UCKL1-AS1 Gene

Subcategory (RNA class) for UCKL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UCKL1-AS1 Gene

  • UCKL1 Antisense RNA 1 2 3 5
  • Uridine-Cytidine Kinase 1-Like 1 Opposite Strand 2 3
  • UCKL1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • UCKL1 Antisense RNA (Non-Protein Coding) 2
  • UCKL1-AS 3
  • UCKL1AS 3
  • UCKL1OS 3

External Ids for UCKL1-AS1 Gene

Previous HGNC Symbols for UCKL1-AS1 Gene

  • UCKL1OS
  • UCKL1AS
  • UCKL1-AS

Previous GeneCards Identifiers for UCKL1-AS1 Gene

  • GC20P062586
  • GC20P062594
  • GC20P062628
  • GC20P062676
  • GC20P062699
  • GC20P062774

Summaries for UCKL1-AS1 Gene

GeneCards Summary for UCKL1-AS1 Gene

UCKL1-AS1 (UCKL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UCKL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UCKL1-AS1 Gene

Genomics for UCKL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for UCKL1-AS1 Gene

Promoters and enhancers for UCKL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I063953 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 +3.1 3123 5.5 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC GLIS1 UCKL1 PIR62018 ARFRP1 TNFRSF6B STMN3 TCEA2 HAR1A RTEL1 ZBTB46 ZNF512B
GH20I063947 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.8 -3.3 -3306 5.9 HDGF PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 UCKL1 MIR647 ENSG00000237371 GMEB2 CICP4 PRPF6 C20orf204 UCKL1-AS1 PIR37009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UCKL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UCKL1-AS1 Gene

Genomic Locations for UCKL1-AS1 Gene
chr20:63,953,384-63,956,985
(GRCh38/hg38)
Size:
3,602 bases
Orientation:
Plus strand
chr20:62,584,737-62,588,338
(GRCh37/hg19)

Genomic View for UCKL1-AS1 Gene

Genes around UCKL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UCKL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UCKL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UCKL1-AS1 Gene

Proteins for UCKL1-AS1 Gene

Post-translational modifications for UCKL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UCKL1-AS1 Gene

Domains & Families for UCKL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UCKL1-AS1 Gene

Function for UCKL1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UCKL1-AS1 Gene

Localization for UCKL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UCKL1-AS1 Gene

Pathways & Interactions for UCKL1-AS1 Gene

SuperPathways for UCKL1-AS1 Gene

No Data Available

Interacting Proteins for UCKL1-AS1 Gene

Gene Ontology (GO) - Biological Process for UCKL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UCKL1-AS1 Gene

Drugs & Compounds for UCKL1-AS1 Gene

No Compound Related Data Available

Transcripts for UCKL1-AS1 Gene

mRNA/cDNA for UCKL1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UCKL1-AS1 Gene

UCKL1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UCKL1-AS1 Gene

No ASD Table

Relevant External Links for UCKL1-AS1 Gene

GeneLoc Exon Structure for
UCKL1-AS1
ECgene alternative splicing isoforms for
UCKL1-AS1

Expression for UCKL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UCKL1-AS1 Gene

mRNA expression in normal human tissues for UCKL1-AS1 Gene

SOURCE GeneReport for Unigene cluster for UCKL1-AS1 Gene:

Hs.551552
genes like me logo Genes that share expression patterns with UCKL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UCKL1-AS1 Gene

Orthologs for UCKL1-AS1 Gene

Evolution for UCKL1-AS1 Gene

ENSEMBL:
Gene Tree for UCKL1-AS1 (if available)
TreeFam:
Gene Tree for UCKL1-AS1 (if available)

No data available for Orthologs for UCKL1-AS1 Gene

Paralogs for UCKL1-AS1 Gene

No data available for Paralogs for UCKL1-AS1 Gene

Variants for UCKL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for UCKL1-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000112354 -- 63,954,094(+) C/T non_coding_transcript_variant
rs1000184544 -- 63,955,235(+) G/C non_coding_transcript_variant
rs1000246414 -- 63,951,828(+) C/T upstream_transcript_variant
rs1000467124 -- 63,954,441(+) GGAACGGTGGTGGAGGAAC/GGAAC non_coding_transcript_variant
rs1000528264 -- 63,954,268(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for UCKL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1160691 CNV deletion 26073780
nsv428381 CNV gain+loss 18775914
nsv469773 CNV gain 16826518
nsv509784 CNV insertion 20534489
nsv586695 CNV loss 21841781
nsv953309 CNV deletion 24416366

Additional Variant Information for UCKL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UCKL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UCKL1-AS1 Gene

Disorders for UCKL1-AS1 Gene

Additional Disease Information for UCKL1-AS1

No disorders were found for UCKL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UCKL1-AS1 Gene

Publications for UCKL1-AS1 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  2. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PMID: 17525332) Matsuoka S … Elledge SJ (Science (New York, N.Y.) 2007) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for UCKL1-AS1 Gene

Sources for UCKL1-AS1 Gene

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