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Aliases for UCKL1-AS1 Gene

Subcategory (RNA class) for UCKL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UCKL1-AS1 Gene

  • UCKL1 Antisense RNA 1 2 3 5
  • Uridine-Cytidine Kinase 1-Like 1 Opposite Strand 2 3
  • UCKL1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • UCKL1 Antisense RNA (Non-Protein Coding) 2
  • UCKL1-AS 3
  • UCKL1AS 3
  • UCKL1OS 3

External Ids for UCKL1-AS1 Gene

Previous HGNC Symbols for UCKL1-AS1 Gene

  • UCKL1OS
  • UCKL1AS
  • UCKL1-AS

Previous GeneCards Identifiers for UCKL1-AS1 Gene

  • GC20P062586
  • GC20P062594
  • GC20P062628
  • GC20P062676
  • GC20P062699
  • GC20P062774

Summaries for UCKL1-AS1 Gene

GeneCards Summary for UCKL1-AS1 Gene

UCKL1-AS1 (UCKL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UCKL1-AS1 Gene

Genomics for UCKL1-AS1 Gene

Regulatory Elements for UCKL1-AS1 Gene

Enhancers for UCKL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063947 0.8 Ensembl ENCODE 0.8 -3.3 -3307 5.9 PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 YY1 PRPF6 CICP4 MIR647 MIR1914 GMEB2 RTEL1 ENSG00000237371 UCKL1 LINC00176 UCKL1-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UCKL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UCKL1-AS1 Gene

Chromosome:
20
Start:
63,953,384 bp from pter
End:
63,956,985 bp from pter
Size:
3,602 bases
Orientation:
Plus strand

Genomic View for UCKL1-AS1 Gene

Genes around UCKL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UCKL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UCKL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UCKL1-AS1 Gene

Proteins for UCKL1-AS1 Gene

Post-translational modifications for UCKL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UCKL1-AS1 Gene

Domains & Families for UCKL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UCKL1-AS1 Gene

Function for UCKL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UCKL1-AS1 Gene

Localization for UCKL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UCKL1-AS1 Gene

Pathways & Interactions for UCKL1-AS1 Gene

SuperPathways for UCKL1-AS1 Gene

No Data Available

Interacting Proteins for UCKL1-AS1 Gene

Gene Ontology (GO) - Biological Process for UCKL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UCKL1-AS1 Gene

Transcripts for UCKL1-AS1 Gene

mRNA/cDNA for UCKL1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UCKL1-AS1 Gene

UCKL1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UCKL1-AS1 Gene

No ASD Table

Relevant External Links for UCKL1-AS1 Gene

GeneLoc Exon Structure for
UCKL1-AS1
ECgene alternative splicing isoforms for
UCKL1-AS1

Expression for UCKL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UCKL1-AS1 Gene

mRNA expression in normal human tissues for UCKL1-AS1 Gene

SOURCE GeneReport for Unigene cluster for UCKL1-AS1 Gene:

Hs.551552
genes like me logo Genes that share expression patterns with UCKL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UCKL1-AS1 Gene

Orthologs for UCKL1-AS1 Gene

Evolution for UCKL1-AS1 Gene

ENSEMBL:
Gene Tree for UCKL1-AS1 (if available)
TreeFam:
Gene Tree for UCKL1-AS1 (if available)

No data available for Orthologs for UCKL1-AS1 Gene

Paralogs for UCKL1-AS1 Gene

No data available for Paralogs for UCKL1-AS1 Gene

Variants for UCKL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for UCKL1-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111273214 -- 63,957,420(+) GCGTA(A/G)GGAGT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime, utr-variant-5-prime
rs111385196 -- 63,955,690(+) CCGCG(C/G)AGGGC intron-variant, nc-transcript-variant
rs112211886 -- 63,952,349(+) CCAGC(A/C)CTGTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112237198 -- 63,954,034(+) GGGGA(-/A)GGAGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113233838 -- 63,954,852(+) GGGCA(C/G)GCCCA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for UCKL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1160691 CNV deletion 26073780
nsv428381 CNV gain+loss 18775914
nsv469773 CNV gain 16826518
nsv509784 CNV insertion 20534489
nsv586695 CNV loss 21841781
nsv953309 CNV deletion 24416366

Relevant External Links for UCKL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UCKL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UCKL1-AS1 Gene

Disorders for UCKL1-AS1 Gene

Relevant External Links for UCKL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UCKL1-AS1

No disorders were found for UCKL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UCKL1-AS1 Gene

Publications for UCKL1-AS1 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  2. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PMID: 17525332) Matsuoka S. … Elledge S.J. (Science 2007) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for UCKL1-AS1 Gene

Sources for UCKL1-AS1 Gene

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