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Aliases for UCHL1-AS1 Gene

Subcategory (RNA class) for UCHL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UCHL1-AS1 Gene

  • UCHL1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for UCHL1-AS1 Gene

Summaries for UCHL1-AS1 Gene

GeneCards Summary for UCHL1-AS1 Gene

UCHL1-AS1 (UCHL1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UCHL1-AS1 Gene

Genomics for UCHL1-AS1 Gene

Regulatory Elements for UCHL1-AS1 Gene

Enhancers for UCHL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F040989 1.5 FANTOM5 Ensembl ENCODE 9.7 +264.2 264162 5.9 HDGF TBL1XR1 WRNIP1 KLF17 FEZF1 ZNF2 ZBTB40 ELK1 ZNF366 CBX5 APBB2 UCHL1 UCHL1-AS1 RBM47 RNA5SP160 GC04M041050
GH04F041857 1.5 FANTOM5 9.7 -600.7 -600706 0.4 ATF3 RAD21 UCHL1 UCHL1-AS1 PHOX2B HMGB1P28 LINC00682
GH04F041211 1.1 ENCODE 11.5 +42.0 41984 6.3 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207 UCHL1 UCHL1-AS1 APBB2 RNU6-1195P
GH04F040998 1.1 FANTOM5 Ensembl ENCODE 9.7 +257.9 257852 1.7 JUND JUN RNU6-836P UCHL1 UCHL1-AS1 RBM47 RNA5SP160 GC04M041050
GH04F040976 0.9 Ensembl ENCODE 10.1 +280.1 280127 0.4 CTCF TRIM22 THRB RAD21 KAT8 ZNF121 KLF16 ZNF143 SMC3 FOS APBB2 RNU6-836P UCHL1-AS1 UCHL1 RNA5SP160 GC04M040906
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UCHL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UCHL1-AS1 Gene

Chromosome:
4
Start:
41,220,074 bp from pter
End:
41,256,727 bp from pter
Size:
36,654 bases
Orientation:
Minus strand

Genomic View for UCHL1-AS1 Gene

Genes around UCHL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UCHL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UCHL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UCHL1-AS1 Gene

Proteins for UCHL1-AS1 Gene

Post-translational modifications for UCHL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UCHL1-AS1 Gene

Domains & Families for UCHL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UCHL1-AS1 Gene

Function for UCHL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UCHL1-AS1 Gene

Localization for UCHL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UCHL1-AS1 Gene

Pathways & Interactions for UCHL1-AS1 Gene

SuperPathways for UCHL1-AS1 Gene

No Data Available

Interacting Proteins for UCHL1-AS1 Gene

Gene Ontology (GO) - Biological Process for UCHL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UCHL1-AS1 Gene

Transcripts for UCHL1-AS1 Gene

mRNA/cDNA for UCHL1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UCHL1-AS1 Gene

No ASD Table

Relevant External Links for UCHL1-AS1 Gene

GeneLoc Exon Structure for
UCHL1-AS1
ECgene alternative splicing isoforms for
UCHL1-AS1

Expression for UCHL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UCHL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UCHL1-AS1 Gene

This gene is overexpressed in Pituitary (x6.5), Brain - Hippocampus (x5.4), Brain - Frontal Cortex (BA9) (x4.9), Brain - Nucleus accumbens (basal ganglia) (x4.4), Brain - Cortex (x4.3), Brain - Caudate (basal ganglia) (x4.2), and Brain - Hypothalamus (x4.1).
genes like me logo Genes that share expression patterns with UCHL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UCHL1-AS1 Gene

Orthologs for UCHL1-AS1 Gene

Evolution for UCHL1-AS1 Gene

ENSEMBL:
Gene Tree for UCHL1-AS1 (if available)
TreeFam:
Gene Tree for UCHL1-AS1 (if available)

No data available for Orthologs for UCHL1-AS1 Gene

Paralogs for UCHL1-AS1 Gene

No data available for Paralogs for UCHL1-AS1 Gene

Variants for UCHL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for UCHL1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs397515634 Pathogenic 41,256,996(+) GATGG(A/C)GATCA upstream-variant-2KB, reference, missense
rs5030732 Uncertain significance 41,257,616(+) GCTGT(A/C)CCGGC upstream-variant-2KB, reference, missense
rs10009848 -- 41,242,605(+) taaca(C/T)ggtga intron-variant
rs10012533 -- 41,221,314(+) GTGGG(A/G)TTACA intron-variant
rs10012848 -- 41,247,019(+) tgggg(A/G)ttgaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UCHL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829914 CNV loss 17160897
esv3600330 CNV loss 21293372
esv3563761 CNV deletion 23714750
esv2677426 CNV deletion 23128226
dgv1478e212 CNV loss 25503493

Relevant External Links for UCHL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UCHL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UCHL1-AS1 Gene

Disorders for UCHL1-AS1 Gene

Relevant External Links for UCHL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UCHL1-AS1

No disorders were found for UCHL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UCHL1-AS1 Gene

Publications for UCHL1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for UCHL1-AS1 Gene

Sources for UCHL1-AS1 Gene

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