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Aliases for UCA1 Gene

Subcategory (RNA class) for UCA1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for UCA1 Gene

  • Urothelial Cancer Associated 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 178 2 3
  • Cancer Up-Regulated Drug Resistant 2 3
  • Onco-LncRNA-36 3
  • NCRNA00178 3
  • LINC00178 3
  • UCAT1 3
  • CUDR 3

External Ids for UCA1 Gene

Previous GeneCards Identifiers for UCA1 Gene

  • GC19U900573
  • GC19P015939
  • GC19P015511

Summaries for UCA1 Gene

Entrez Gene Summary for UCA1 Gene

  • This gene produces a long non-coding RNA that was found to be upregulated in bladder cancer and plays a regulatory role in cell proliferation. This transcript regulates several genes, including CREB (cAMP responsive element binding protein). Expression of this transcript is regulated by CCAAT/enhancer-binding protein-alpha. [provided by RefSeq, Dec 2017]

GeneCards Summary for UCA1 Gene

UCA1 (Urothelial Cancer Associated 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with UCA1 include Bladder Cancer. Among its related pathways are LncRNA-mediated mechanisms of therapeutic resistance.

Additional gene information for UCA1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UCA1 Gene

Genomics for UCA1 Gene

GeneHancer (GH) Regulatory Elements for UCA1 Gene

Promoters and enhancers for UCA1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I015826 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 16.3 +3.8 3818 12.9 HDGF PKNOX1 CLOCK SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ENSG00000273782 AKAP8 MED26 ENSG00000269578 BRD4 CYP4F24P UCA1 OR10H4 CHERP OR10H5
GH19I015844 Enhancer 1.1 ENCODE dbSUPER 8.3 +15.7 15714 1 HDAC1 PKNOX1 ATF1 ARNT ZBTB40 TCF12 ZNF766 GATA2 ETV6 ATF7 GC19M015845 CYP4F24P UCA1 GC19M015836
GH19I015824 Enhancer 0.7 dbSUPER 10.6 -4.0 -3991 1.7 ETV1 BACH1 PYGO2 ZNF644 ZBTB40 ZNF507 RELA IRF9 ZNF766 NFE2 GC19P015826 ZNF861P CYP4F24P AKAP8 CHERP ENSG00000267904 C19orf44 ENSG00000269578 OR10H5 ENSG00000268087
GH19I015841 Enhancer 0.5 dbSUPER 7.2 +13.4 13396 0.9 CTCF REST ZBTB33 ZKSCAN1 UCA1 CYP4F11 GC19M015845 GC19M015836
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UCA1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UCA1 Gene

Genomic Locations for UCA1 Gene
chr19:15,828,947-15,836,321
(GRCh38/hg38)
Size:
7,375 bases
Orientation:
Plus strand
chr19:15,939,757-15,947,130
(GRCh37/hg19)

Genomic View for UCA1 Gene

Genes around UCA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UCA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UCA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UCA1 Gene

Proteins for UCA1 Gene

  • Protein details for UCA1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q2VCE5
    Recommended name:
    UCA1 protein
    Protein Accession:
    Q2VCE5

    Protein attributes for UCA1 Gene

    Size:
    60 amino acids
    Molecular mass:
    6544 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UCA1 Gene

Post-translational modifications for UCA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UCA1 Gene

Domains & Families for UCA1 Gene

Gene Families for UCA1 Gene

Protein Domains for UCA1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for UCA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with UCA1: view

No data available for UniProtKB/Swiss-Prot for UCA1 Gene

Function for UCA1 Gene

Animal Model Products

miRNA for UCA1 Gene

miRTarBase miRNAs that target UCA1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for UCA1 Gene

Localization for UCA1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UCA1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UCA1 Gene

Pathways & Interactions for UCA1 Gene

genes like me logo Genes that share pathways with UCA1: view

Pathways by source for UCA1 Gene

1 BioSystems pathway for UCA1 Gene

Interacting Proteins for UCA1 Gene

Gene Ontology (GO) - Biological Process for UCA1 Gene

None

No data available for SIGNOR curated interactions for UCA1 Gene

Drugs & Compounds for UCA1 Gene

No Compound Related Data Available

Transcripts for UCA1 Gene

mRNA/cDNA for UCA1 Gene

(20) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UCA1 Gene

Urothelial cancer associated 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UCA1 Gene

No ASD Table

Relevant External Links for UCA1 Gene

GeneLoc Exon Structure for
UCA1
ECgene alternative splicing isoforms for
UCA1

Expression for UCA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UCA1 Gene

mRNA differential expression in normal tissues according to GTEx for UCA1 Gene

This gene is overexpressed in Bladder (x23.4) and Cervix - Endocervix (x8.6).

NURSA nuclear receptor signaling pathways regulating expression of UCA1 Gene:

UCA1

SOURCE GeneReport for Unigene cluster for UCA1 Gene:

Hs.644234
genes like me logo Genes that share expression patterns with UCA1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UCA1 Gene

Orthologs for UCA1 Gene

Evolution for UCA1 Gene

ENSEMBL:
Gene Tree for UCA1 (if available)
TreeFam:
Gene Tree for UCA1 (if available)

No data available for Orthologs for UCA1 Gene

Paralogs for UCA1 Gene

No data available for Paralogs for UCA1 Gene

Variants for UCA1 Gene

Sequence variations from dbSNP and Humsavar for UCA1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000154015 -- 15,832,624(+) C/T intron_variant
rs1000178231 -- 15,834,944(+) A/G non_coding_transcript_variant
rs1000267710 -- 15,827,226(+) T/G upstream_transcript_variant
rs1000476101 -- 15,836,794(+) G/A downstream_transcript_variant
rs1000488880 -- 15,834,055(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for UCA1 Gene

Variant ID Type Subtype PubMed ID
esv2671181 CNV deletion 23128226
esv2718244 CNV deletion 23290073
esv3334671 CNV duplication 20981092
nsv1064684 CNV gain 25217958
nsv1133007 OTHER inversion 24896259
nsv833766 CNV loss 17160897
nsv960799 CNV duplication 23825009

Additional Variant Information for UCA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UCA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UCA1 Gene

Disorders for UCA1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for UCA1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search UCA1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for UCA1

genes like me logo Genes that share disorders with UCA1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for UCA1 Gene

Publications for UCA1 Gene

  1. lncRNA UCA1 Contributes to Imatinib Resistance by Acting as a ceRNA Against miR-16 in Chronic Myeloid Leukemia Cells. (PMID: 27854515) Xiao Y … Zhang Z (DNA and cell biology 2017) 2 3 58
  2. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3 58
  3. UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion. (PMID: 18501714) Wang F … Chen W (FEBS letters 2008) 2 3 58
  4. Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR. (PMID: 17416635) Tsang WP … Kwok TT (RNA (New York, N.Y.) 2007) 2 3 58
  5. LncRNA UCA1 modulates cardiomyocyte apoptosis by targeting miR-143 in myocardial ischemia-reperfusion injury. (PMID: 28916071) Yu SY … Tang L (International journal of cardiology 2017) 3 58

Products for UCA1 Gene

Sources for UCA1 Gene

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