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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

UCA1 Gene

RNA gene GIFtS: 31
GCID: GC19P015939

Urothelial Cancer Associated 1 (Non-Protein Coding)

2 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 10

Aliases
Urothelial Cancer Associated 1 (Non-Protein Coding)¹ ²		LINC00178²
Cancer Up-Regulated Drug Resistant¹		NCRNA00178²
Long Intergenic Non-Protein Coding RNA 178¹		UCAT1²
CUDR²		F⁵

External Ids:	HGNC: 37126¹	Entrez Gene: 652995²	Ensembl: ENSG00000214049⁷	OMIM: 612280⁵	UniProtKB: Q2VCE5⁴

ORGUL members:	fRNAdb¹⁰:FR407590 FR006815
	H-InvDB¹²:HIT000017268
	NCBI¹³:AK092401 DQ343132
	NONCODE¹⁴:n377754 n376250 n376439 n376249 n343049
	RNAdb¹⁵:LIT3336

Export aliases for UCA1 gene to outside databases

Previous GC identifers: GC19U900573 GC19P015511

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for UCA1 Gene:

This gene represents a long non-coding RNA. It plays a regulatory role in bladder cancer cell proliferation. Several

genes can be regulated by this gene, and the most important one is the CREB (cAMP responsive element binding protein)

gene, which encodes a transcriptional factor and affects the oncogenesis. (provided by RefSeq, Mar 2012)

GeneCards Summary for UCA1 Gene:

UCA1 (urothelial cancer associated 1 (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with UCA1 include fucosidosis, and bladder carcinoma.

fRNAdb sequence ontologies for UCA1 - the ORGUL cluster for this gene includes several descriptions:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000019.9 NT_011295.11 NC_018930.2

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for UCA1
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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UCA1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.12 Ensembl cytogenetic band: 19p13.12 HGNC cytogenetic band: 19p13.12

UCA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
UCA1 gene location

GeneLoc information about chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19P015939: view genomic region (about GC identifiers)

Start:	15,939,757 bp from pter	End:	15,947,130 bp from pter
Size:	7,374 bases	Orientation:	plus strand

ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for UCA1

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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About This Section

UniProtKB/TrEMBL: Q2VCE5 (See protein sequence)

Recommended Name: UCA1 protein

Size: 60 amino acids; 6544 Da

Post-translational modifications:

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_Q2VCE5

UCA1 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : --

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

LNCRNA: Long non-coding RNAs

ProtoNet protein and cluster: Q2VCE5

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for UCA1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
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About This Section

Unigene Cluster for UCA1:

Urothelial cancer associated 1 (non-protein coding)

Hs.644234 [show with all ESTs]

Unigene Representative Sequence: NR_015379

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000397381(lincRNA)(uc002nbr.3) ENST00000589333(lincRNA) ENST00000600160(lincRNA)

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Additional mRNA sequence:

AK024303.1 AK092401.1 BC005351.1 BC017567.1 BC022824.1 BC055082.1 BC070340.1 BC107722.1

DQ249310.1 DQ343132.1 EU334869.1 GU357550.1 GU799561.1 GU799562.1 GU799563.1 GU799564.1

GU799565.1 HQ833208.1 HQ833209.1 NR_015379.3

6 DOTS entries:

DT.92042969 DT.100033619 DT.91689580 DT.100817224 DT.86853179 DT.95289769

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for UCA1:RNAdb

UCA1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: AAATGGACAA

About this image

Genevestigator expression for UCA1

SOURCE GeneReport for Unigene cluster: Hs.644234

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for UCA1 (if available)
TreeFam Gene Tree for UCA1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 19 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs149663473^1,2		--	15937993(+)	`CAGGTA/GCCAGG`	1	--	us2k¹		0	--	--	--	--
rs145477339^1,2	C	--	15938261(+)	`ACACGC/TCATCT`	1	--	us2k¹		0	--	--	--	--
rs185920429^1,2		--	15938678(+)	`ATATAG/TTCTAT`	1	--	us2k¹		0	--	--	--	--
rs139534722^1,2		--	15938682(+)	`ATTCTA/GTCTTG`	1	--	us2k¹		0	--	--	--	--
rs145097151^1,2		--	15938770(+)	`CACACC/TTGTAA`	1	--	us2k¹		0	--	--	--	--
rs62106093^1,2	C	--	15938819(+)	`GAGCCC/TGGGAG`	1	--	us2k¹		4		NA WA EA	360
rs190941867^1,2		--	15938865(+)	`ACTCTA/GTTATA`	1	--	us2k¹		0	--	--	--	--
rs147591745^1,2	C	--	15938900(+)	`TCAAGC/GTGACA`	1	--	us2k¹		0	--	--	--	--
rs77401947^1,2	F	--	15938939(+)	`ATACCG/AGCAAG`	1	--	us2k¹		1		WA	118
rs184027356^1,2		--	15939051(+)	`ACTGCA/GTTGTG`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for UCA1 (15939757 - 15947130 bp)

Structural Variations
Database of Genomic Variants (DGV) 4 variations for UCA1: About this table

Variant ID	Type	Subtype	PubMed ID
esv2671181	CNV	Deletion	23128226
esv2718244	CNV	Deletion	23290073
nsv833766	CNV	Loss	17160897
nsv911139	CNV	Gain	21882294

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

UCA1 for disorders           About GeneDecksing

OMIM gene information: 612280
OMIM disorders: 230000
2 diseases for UCA1:    About MalaCards

fucosidosis bladder carcinoma

1 disease from the University of Copenhagen DISEASES database for UCA1:

Urinary bladder cancer

Human Genome Epidemiology (HuGE) Navigator: UCA1 (1 document)

Export disorders for UCA1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for UCA1 gene, integrated from 9 sources (see all 13):
(articles sorted by number of sources associating them with UCA1)

Utopia: connect your pdf to the dynamic
world of online information

Analysis of long non-coding RNA expression profiles in gastric cancer. (PubMed id 23801869)^{1, 3} Cao W.J....Zhang Z.Y. (2013)
UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion. (PubMed id 18501714)^{1, 3} Wang F....Chen W. (2008)
Induction of drug resistance and transformation in hu man cancer cells by the noncoding RNA CUDR. (PubMed id 17416635)^{1, 3} Tsang W.P....Kwok T.T. (2007)
Long non-coding RNA UCA1a(CUDR) promotes proliferation and tumorigenesis of bladder cancer. (PubMed id 22576688)¹ Wang Y....Li X. (2012)
Long non-coding RNA UCA1 regulated cell cycle distribu tion via CREB through PI3-K dependent pathway in bladder carcinoma cells. (PubMed id 22285928)¹ Yang C....Chen W. (2012)
Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)¹ Altun M....Kessler B.M. (2011)
[Cellular localization and tissue expression pattern of UCA1, a non-coding RNA]. (PubMed id 20117985)¹ Xie X.J....Chen W. (2010)
Rapid identification of UCA1 as a very sensitive and specific unique marker for human bladder carcinoma. (PubMed id 16914571)¹ Wang X.S....Chen W.F. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 652995	HGNC: 37126	Ensembl:ENSG00000214049	euGenes: HUgn652995	ECgene: UCA1
H-InvDB: UCA1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for UCA1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for UCA1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for UCA1 gene:
Search GeneIP for patents involving UCA1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat UCA1

	inGenious Targeting Laboratory - Custom generated mouse model solutions for UCA1
	inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for UCA1

Customized:

	stable knockdown cell line services for UCA1
	inducible knockdown cell line services for UCA1
	design and validation of potent shRNA sequences against UCA1
	adenovirus for potent knockdown of UCA1
	stable overexpressing cell line services for UCA1
	inducible overexpressing cell line services for UCA1
	adenovirus for overexpression of UCA1

Search LSBio for Antibodies for UCA1

GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013

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Category			TGFB1 (GIFtS: 73) transforming growth factor, beta 1
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes UCA1 gene at Home site.

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UCA1 Gene

Urothelial Cancer Associated 1 (Non-Protein Coding)

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UCA1 Gene

Urothelial Cancer Associated 1 (Non-Protein Coding)

Aliasesfor UCA1 gene

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Proteinsfor UCA1 gene

Protein Domains /Familiesfor UCA1 gene

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for UCA1 gene

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