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Aliases for UBXN7-AS1 Gene

Subcategory (RNA class) for UBXN7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBXN7-AS1 Gene

  • UBXN7 Antisense RNA 1 2 3 5
  • UBXN7 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UBXN7-AS1 Gene

Previous GeneCards Identifiers for UBXN7-AS1 Gene

  • GC00U933578
  • GC03P196159

Summaries for UBXN7-AS1 Gene

GeneCards Summary for UBXN7-AS1 Gene

UBXN7-AS1 (UBXN7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBXN7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBXN7-AS1 Gene

Genomics for UBXN7-AS1 Gene

Regulatory Elements for UBXN7-AS1 Gene

Enhancers for UBXN7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H196079 1.4 ENCODE dbSUPER 21.4 -350.4 -350404 4.4 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B UBXN7 SDHAP1 SDHAP2 ACAP2 SENP5 UBXN7-AS1 ENSG00000230732 MUC4 LINC00969 ENSG00000260261
GH03H196337 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.5 -92.0 -91986 4.4 HDGF PKNOX1 ATF1 ARNT SIN3A YY1 ZNF766 ELK1 ATF7 FOS TM4SF19 SDHAP1 LINC00969 UBXN7 ENSG00000260261 ENSG00000231443 ENSG00000271662 SDHAP2 PCYT1A UBXN7-AS1
GH03H196163 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -266.7 -266747 2.9 HDGF ARNT ZNF493 ARID4B YBX1 DMAP1 ZNF2 TCF12 SLC30A9 ZNF207 SDHAP1 SDHAP2 LINC00969 UBXN7 ENSG00000230732 RNU6ATAC24P ACAP2 ENSG00000226345 ENSG00000213358 RPS29P3
GH03H196629 1.6 Ensembl ENCODE dbSUPER 10.5 +201.1 201106 6.2 HDGF PKNOX1 SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 CBX5 ZNF143 UBXN7 NRROS SDHAP1 SENP5 LOC220729 CEP19 ENSG00000260261 UBXN7-AS1 LINC01063 TCTEX1D2
GH03H196968 1.6 FANTOM5 ENCODE dbSUPER 10.4 +538.0 538008 2.4 PKNOX1 SIN3A ZNF766 GLIS2 ZNF143 ZNF207 ATF7 RUNX3 REST SMARCB1 SDHAP1 LOC220729 LRCH3 UBXN7 ENSG00000234742 SENP5 RPL35A PIGZ NCBP2-AS1 UBXN7-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBXN7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UBXN7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164412 715 2601 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF143 DEK SP3

Genomic Locations for UBXN7-AS1 Gene

Genomic Locations for UBXN7-AS1 Gene
chr3:196,431,385-196,432,530
(GRCh38/hg38)
Size:
1,146 bases
Orientation:
Plus strand
chr3:196,158,235-196,160,242
(GRCh37/hg19)

Genomic View for UBXN7-AS1 Gene

Genes around UBXN7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBXN7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBXN7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBXN7-AS1 Gene

Proteins for UBXN7-AS1 Gene

Post-translational modifications for UBXN7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBXN7-AS1 Gene

Domains & Families for UBXN7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBXN7-AS1 Gene

Function for UBXN7-AS1 Gene

Phenotypes From GWAS Catalog for UBXN7-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBXN7-AS1 Gene

Localization for UBXN7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBXN7-AS1 Gene

Pathways & Interactions for UBXN7-AS1 Gene

SuperPathways for UBXN7-AS1 Gene

No Data Available

Interacting Proteins for UBXN7-AS1 Gene

Gene Ontology (GO) - Biological Process for UBXN7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBXN7-AS1 Gene

Drugs & Compounds for UBXN7-AS1 Gene

No Compound Related Data Available

Transcripts for UBXN7-AS1 Gene

mRNA/cDNA for UBXN7-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBXN7-AS1 Gene

No ASD Table

Relevant External Links for UBXN7-AS1 Gene

GeneLoc Exon Structure for
UBXN7-AS1
ECgene alternative splicing isoforms for
UBXN7-AS1

Expression for UBXN7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBXN7-AS1 Gene

genes like me logo Genes that share expression patterns with UBXN7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBXN7-AS1 Gene

Orthologs for UBXN7-AS1 Gene

Evolution for UBXN7-AS1 Gene

ENSEMBL:
Gene Tree for UBXN7-AS1 (if available)
TreeFam:
Gene Tree for UBXN7-AS1 (if available)

No data available for Orthologs for UBXN7-AS1 Gene

Paralogs for UBXN7-AS1 Gene

No data available for Paralogs for UBXN7-AS1 Gene

Variants for UBXN7-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBXN7-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1002765183 -- 196,433,182(+) AGAAC(A/C/G)ATCGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004111734 -- 196,430,630(+) GTGAA(G/T)CTCCA intron-variant, upstream-variant-2KB
rs1004905386 -- 196,430,388(+) AATAA(A/G)TGGCT intron-variant, upstream-variant-2KB
rs1005229622 -- 196,431,577(+) AGCAG(A/G)AGGCC intron-variant, nc-transcript-variant
rs1005523337 -- 196,429,469(+) TCACA(-/TTTATT)TTTAT intron-variant, upstream-variant-2KB

Relevant External Links for UBXN7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBXN7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBXN7-AS1 Gene

Disorders for UBXN7-AS1 Gene

Relevant External Links for UBXN7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBXN7-AS1

No disorders were found for UBXN7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBXN7-AS1 Gene

Publications for UBXN7-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for UBXN7-AS1 Gene

Sources for UBXN7-AS1 Gene

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