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Aliases for UBXN10-AS1 Gene

Subcategory (RNA class) for UBXN10-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBXN10-AS1 Gene

  • UBXN10 Antisense RNA 1 2 3 5

External Ids for UBXN10-AS1 Gene

Previous GeneCards Identifiers for UBXN10-AS1 Gene

  • GC01M020511

Summaries for UBXN10-AS1 Gene

GeneCards Summary for UBXN10-AS1 Gene

UBXN10-AS1 (UBXN10 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBXN10-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBXN10-AS1 Gene

Genomics for UBXN10-AS1 Gene

Regulatory Elements for UBXN10-AS1 Gene

Enhancers for UBXN10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H020683 0.8 Ensembl ENCODE 6.1 -498.6 -498643 2 ZSCAN4 MAX NR2F2 EGR2 PINK1 ENSG00000233069 SH2D5 UBXN10-AS1 EIF4G3 ENSG00000235432 DDOST
GH01H020184 1.6 FANTOM5 ENCODE dbSUPER 0.7 +0.2 239 3 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B YY1 ZNF766 SMARCB1 ZNF592 UBXN10 UBR4 HP1BP3 UBXN10-AS1
GH01H020185 0.9 ENCODE dbSUPER 0.7 +2.4 2364 0 NFIA HLF MAX RAD21 FOXA1 GABPA YY1 ZNF589 JUND ATF3 UBXN10 UBXN10-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBXN10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UBXN10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000002569 386 201 HDAC1 MLX NFRKB ARID4B ZBTB40 RARA GATA2 ELK1 CREM SMAD5

Genomic Location for UBXN10-AS1 Gene

Chromosome:
1
Start:
20,184,242 bp from pter
End:
20,186,486 bp from pter
Size:
2,245 bases
Orientation:
Minus strand

Genomic View for UBXN10-AS1 Gene

Genes around UBXN10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBXN10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBXN10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBXN10-AS1 Gene

Proteins for UBXN10-AS1 Gene

Post-translational modifications for UBXN10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBXN10-AS1 Gene

Domains & Families for UBXN10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBXN10-AS1 Gene

Function for UBXN10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBXN10-AS1 Gene

Localization for UBXN10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBXN10-AS1 Gene

Pathways & Interactions for UBXN10-AS1 Gene

SuperPathways for UBXN10-AS1 Gene

No Data Available

Interacting Proteins for UBXN10-AS1 Gene

Gene Ontology (GO) - Biological Process for UBXN10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBXN10-AS1 Gene

Drugs & Compounds for UBXN10-AS1 Gene

No Compound Related Data Available

Transcripts for UBXN10-AS1 Gene

mRNA/cDNA for UBXN10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UBXN10-AS1 Gene

No ASD Table

Relevant External Links for UBXN10-AS1 Gene

GeneLoc Exon Structure for
UBXN10-AS1
ECgene alternative splicing isoforms for
UBXN10-AS1

Expression for UBXN10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBXN10-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UBXN10-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (x12.9), Esophagus - Gastroesophageal Junction (x5.6), and Esophagus - Muscularis (x5.4).
genes like me logo Genes that share expression patterns with UBXN10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBXN10-AS1 Gene

Orthologs for UBXN10-AS1 Gene

Evolution for UBXN10-AS1 Gene

ENSEMBL:
Gene Tree for UBXN10-AS1 (if available)
TreeFam:
Gene Tree for UBXN10-AS1 (if available)

No data available for Orthologs for UBXN10-AS1 Gene

Paralogs for UBXN10-AS1 Gene

No data available for Paralogs for UBXN10-AS1 Gene

Variants for UBXN10-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBXN10-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000644567 -- 20,184,118(+) CTGAC(A/G)TTAAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001717750 -- 20,185,977(+) GCCTC(C/G)GCCCT intron-variant, upstream-variant-2KB
rs1001765560 -- 20,185,655(+) CGCAA(C/G)TCAGA intron-variant, upstream-variant-2KB
rs1001775261 -- 20,183,906(+) TGACC(C/T)CTGCC intron-variant, downstream-variant-500B
rs1002152818 -- 20,184,362(+) TTTTG(A/G)CAGAA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for UBXN10-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv545731 CNV gain 21841781

Relevant External Links for UBXN10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBXN10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UBXN10-AS1 Gene

Disorders for UBXN10-AS1 Gene

Relevant External Links for UBXN10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBXN10-AS1

No disorders were found for UBXN10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBXN10-AS1 Gene

Publications for UBXN10-AS1 Gene

No publications were found for UBXN10-AS1 Gene.

Products for UBXN10-AS1 Gene

Sources for UBXN10-AS1 Gene

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