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Aliases for UBXN10 Gene

Aliases for UBXN10 Gene

  • UBX Domain Protein 10 2 3 5
  • UBX Domain-Containing Protein 3 3 4
  • UBX Domain Containing 3 2 3
  • UBXD3 3 4

External Ids for UBXN10 Gene

Previous HGNC Symbols for UBXN10 Gene

  • UBXD3

Previous GeneCards Identifiers for UBXN10 Gene

  • GC01P020387
  • GC01P020512
  • GC01P018758

Summaries for UBXN10 Gene

GeneCards Summary for UBXN10 Gene

UBXN10 (UBX Domain Protein 10) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBXN10 Gene

Genomics for UBXN10 Gene

Regulatory Elements for UBXN10 Gene

Genomic Location for UBXN10 Gene

Chromosome:
1
Start:
20,183,302 bp from pter
End:
20,196,048 bp from pter
Size:
12,747 bases
Orientation:
Plus strand

Genomic View for UBXN10 Gene

Genes around UBXN10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBXN10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBXN10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBXN10 Gene

Proteins for UBXN10 Gene

  • Protein details for UBXN10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LJ8-UBX10_HUMAN
    Recommended name:
    UBX domain-containing protein 10
    Protein Accession:
    Q96LJ8
    Secondary Accessions:
    • Q5R386

    Protein attributes for UBXN10 Gene

    Size:
    280 amino acids
    Molecular mass:
    30811 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UBXN10 Gene

Proteomics data for UBXN10 Gene at MOPED

Post-translational modifications for UBXN10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UBXN10 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for UBXN10 Gene

Domains & Families for UBXN10 Gene

Gene Families for UBXN10 Gene

Protein Domains for UBXN10 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for UBXN10 Gene

Graphical View of Domain Structure for InterPro Entry

Q96LJ8

UniProtKB/Swiss-Prot:

UBX10_HUMAN :
  • Contains 1 UBX domain.
Domain:
  • Contains 1 UBX domain.
genes like me logo Genes that share domains with UBXN10: view

Function for UBXN10 Gene

genes like me logo Genes that share phenotypes with UBXN10: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBXN10 Gene

Localization for UBXN10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for UBXN10 Gene COMPARTMENTS Subcellular localization image for UBXN10 gene
Compartment Confidence
nucleus 4
cytosol 2
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for UBXN10 Gene

Pathways & Interactions for UBXN10 Gene

SuperPathways for UBXN10 Gene

No Data Available

Interacting Proteins for UBXN10 Gene

Gene Ontology (GO) - Biological Process for UBXN10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBXN10 Gene

Drugs & Compounds for UBXN10 Gene

No Compound Related Data Available

Transcripts for UBXN10 Gene

mRNA/cDNA for UBXN10 Gene

Unigene Clusters for UBXN10 Gene

UBX domain protein 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UBXN10 Gene

No ASD Table

Relevant External Links for UBXN10 Gene

GeneLoc Exon Structure for
UBXN10
ECgene alternative splicing isoforms for
UBXN10

Expression for UBXN10 Gene

mRNA expression in normal human tissues for UBXN10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for UBXN10 Gene

This gene is overexpressed in Colon - Sigmoid (x5.0) and Testis (x4.7).

SOURCE GeneReport for Unigene cluster for UBXN10 Gene Hs.432503

genes like me logo Genes that share expression patterns with UBXN10: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for UBXN10 Gene

Orthologs for UBXN10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for UBXN10 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia UBXN10 35
  • 77.9 (n)
  • 73.12 (a)
UBXN10 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia UBXN10 35
  • 77.74 (n)
  • 70.36 (a)
UBXN10 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ubxn10 35
  • 74.55 (n)
  • 70.18 (a)
Ubxn10 16
Ubxn10 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia UBXN10 35
  • 98.93 (n)
  • 97.86 (a)
UBXN10 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ubxn10 35
  • 74.29 (n)
  • 67.14 (a)
oppossum
(Monodelphis domestica)
Mammalia UBXN10 36
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves UBXN10 35
  • 58.53 (n)
  • 51.16 (a)
UBXN10 36
  • 43 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100493414 35
  • 57.01 (n)
  • 50.93 (a)
zebrafish
(Danio rerio)
Actinopterygii ubxn10 35
  • 51.83 (n)
  • 41.5 (a)
ubxn10 36
  • 34 (a)
OneToOne
Species with no ortholog for UBXN10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for UBXN10 Gene

ENSEMBL:
Gene Tree for UBXN10 (if available)
TreeFam:
Gene Tree for UBXN10 (if available)

Paralogs for UBXN10 Gene

No data available for Paralogs for UBXN10 Gene

Variants for UBXN10 Gene

Sequence variations from dbSNP and Humsavar for UBXN10 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs916397 -- 20,183,023(+) CAAAG(C/T)AAGCA upstream-variant-2KB
rs1061588 -- 20,193,315(+) AAGGA(A/G)TTAGA utr-variant-3-prime
rs1048926 -- 20,194,310(+) AACAG(A/C)AGGAG utr-variant-3-prime
rs1048927 -- 20,194,314(+) GCAGG(A/G)GAAGT utr-variant-3-prime
rs3179690 -- 20,191,733(+) ACACC(A/G)GCTTG utr-variant-3-prime

Variation tolerance for UBXN10 Gene

Residual Variation Intolerance Score: 67.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.03; 21.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UBXN10 Gene

HapMap Linkage Disequilibrium report
UBXN10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for UBXN10 Gene

Disorders for UBXN10 Gene

Relevant External Links for UBXN10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBXN10

No disorders were found for UBXN10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBXN10 Gene

Publications for UBXN10 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnover. (PMID: 18775313) Alexandru G. … Deshaies R.J. (Cell 2008) 3

Products for UBXN10 Gene

Sources for UBXN10 Gene

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