Free for academic non-profit institutions. Other users need a Commercial license

Aliases for UBQLNL Gene

Aliases for UBQLNL Gene

  • Ubiquilin-Like 2 3

External Ids for UBQLNL Gene

Previous GeneCards Identifiers for UBQLNL Gene

  • GC11M005511
  • GC11M005514
  • GC11M005517
  • GC11M005520
  • GC11M005527
  • GC11M005535
  • GC11M005193

Summaries for UBQLNL Gene

GeneCards Summary for UBQLNL Gene

UBQLNL (Ubiquilin-Like) is a Protein Coding gene. Among its related pathways are Protein processing in endoplasmic reticulum. An important paralog of this gene is UBQLN3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBQLNL Gene

Genomics for UBQLNL Gene

Regulatory Elements for UBQLNL Gene

Genomic Location for UBQLNL Gene

Start:
5,514,393 bp from pter
End:
5,516,726 bp from pter
Size:
2,334 bases
Orientation:
Minus strand

Genomic View for UBQLNL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for UBQLNL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBQLNL Gene

Proteins for UBQLNL Gene

  • Protein details for UBQLNL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYU4-UBQLN_HUMAN
    Recommended name:
    Ubiquilin-like protein
    Protein Accession:
    Q8IYU4
    Secondary Accessions:
    • Q6ZRU1
    • Q96EK3
    • Q96MB0

    Protein attributes for UBQLNL Gene

    Size:
    475 amino acids
    Molecular mass:
    52897 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87218.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA.; Evidence={ECO:0000305};

    Alternative splice isoforms for UBQLNL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for UBQLNL Gene

Proteomics data for UBQLNL Gene at MOPED

Post-translational modifications for UBQLNL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UBQLNL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for UBQLNL Gene

Domains for UBQLNL Gene

Gene Families for UBQLNL Gene

HGNC:
  • UBQLN :Ubiquilin family

Protein Domains for UBQLNL Gene

Suggested Antigen Peptide Sequences for UBQLNL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYU4

UniProtKB/Swiss-Prot:

UBQLN_HUMAN :
  • Q8IYU4
Domain:
  • Contains 1 ubiquitin-like domain.
genes like me logo Genes that share domains with UBQLNL: view

Function for UBQLNL Gene

Gene Ontology (GO) - Molecular Function for UBQLNL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with UBQLNL: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for UBQLNL Gene

Localization for UBQLNL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for UBQLNL Gene COMPARTMENTS Subcellular localization image for UBQLNL gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for UBQLNL Gene

Pathways for UBQLNL Gene

genes like me logo Genes that share pathways with UBQLNL: view

Pathways by source for UBQLNL Gene

1 KEGG pathway for UBQLNL Gene

Gene Ontology (GO) - Biological Process for UBQLNL Gene

None

Transcripts for UBQLNL Gene

mRNA/cDNA for UBQLNL Gene

(17) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBQLNL Gene

Ubiquilin-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for UBQLNL

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBQLNL Gene

No ASD Table

Relevant External Links for UBQLNL Gene

GeneLoc Exon Structure for
UBQLNL
ECgene alternative splicing isoforms for
UBQLNL

Expression for UBQLNL Gene

mRNA expression in normal human tissues for UBQLNL Gene

mRNA differential expression in normal tissues according to GTEx for UBQLNL Gene

This gene is overexpressed in Testis (26.0).

SOURCE GeneReport for Unigene cluster for UBQLNL Gene Hs.10688

genes like me logo Genes that share expressions with UBQLNL: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for UBQLNL Gene

Orthologs for UBQLNL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for UBQLNL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UBQLNL 35
  • 98.95 (n)
  • 97.26 (a)
UBQLNL 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia UBQLNL 35
  • 79.68 (n)
  • 70.93 (a)
UBQLNL 36
  • 54 (a)
OneToOne
dog
(Canis familiaris)
Mammalia UBQLNL 35
  • 81.29 (n)
  • 72.78 (a)
UBQLNL 36
  • 56 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ubqlnl 35
  • 73.62 (n)
  • 59.57 (a)
Ubqlnl 16
Ubqlnl 36
  • 46 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia UBQLNL 36
  • 32 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ubqlnl 35
  • 72.85 (n)
  • 60.34 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 22 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 19 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG31528 36
  • 15 (a)
ManyToMany
Ubqn 36
  • 20 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea ubql-1 36
  • 21 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DSK2 36
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10824 36
  • 20 (a)
OneToMany
Species with no ortholog for UBQLNL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for UBQLNL Gene

ENSEMBL:
Gene Tree for UBQLNL (if available)
TreeFam:
Gene Tree for UBQLNL (if available)

Paralogs for UBQLNL Gene

Paralogs for UBQLNL Gene

genes like me logo Genes that share paralogs with UBQLNL: view

Variants for UBQLNL Gene

Sequence variations from dbSNP and Humsavar for UBQLNL Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs393044 - 5,515,307(-) CAGCT(G/T)GGATA missense, reference
rs396328 -- 5,514,145(-) ACAAG(C/G)TCACA downstream-variant-500B
rs872751 -- 5,515,815(+) ACTTC(G/T)GGGTT reference, synonymous-codon
rs934460 -- 5,513,952(-) AAGAC(G/T)GCCTG downstream-variant-500B
rs1044392 -- 5,514,441(-) ATTGG(C/T)CGTGG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for UBQLNL Gene

Variant ID Type Subtype PubMed ID
nsv832057 CNV Loss 17160897
nsv896939 CNV Loss 21882294
nsv510997 CNV Complex 20534489
nsv896940 CNV Loss 21882294

Relevant External Links for UBQLNL Gene

HapMap Linkage Disequilibrium report
UBQLNL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UBQLNL Gene

Disorders for UBQLNL Gene

Relevant External Links for UBQLNL

Genetic Association Database (GAD)
UBQLNL
Human Genome Epidemiology (HuGE) Navigator
UBQLNL
genes like me logo Genes that share disorders with UBQLNL: view

No data available for UniProtKB/Swiss-Prot for UBQLNL Gene

Publications for UBQLNL Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for UBQLNL Gene

Sources for UBQLNL Gene

Back to Top

Content