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Aliases for UBOX5-AS1 Gene

Subcategory (RNA class) for UBOX5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBOX5-AS1 Gene

  • UBOX5 Antisense RNA 1 2 3 5
  • UBOX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UBOX5-AS1 Gene

Previous GeneCards Identifiers for UBOX5-AS1 Gene

  • GC20P003088

Summaries for UBOX5-AS1 Gene

GeneCards Summary for UBOX5-AS1 Gene

UBOX5-AS1 (UBOX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBOX5-AS1 Gene

Genomics for UBOX5-AS1 Gene

Regulatory Elements for UBOX5-AS1 Gene

Enhancers for UBOX5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F004037 1.7 FANTOM5 Ensembl ENCODE 9.8 +931.4 931390 2.2 HDGF PKNOX1 ATF1 FEZF1 ZNF2 YY1 GLIS2 FOS SP3 YY2 ENSG00000236387 PRNT RN7SL555P LOC100421361 ENSG00000229539 RNF24 UBOX5-AS1 MAVS PANK2 FTLP3
GH20F003795 1.5 FANTOM5 ENCODE 9.8 +695.1 695143 14.1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 CDC25B ENSG00000236387 RN7SL555P LOC100421361 PRNT VPS16 SPEF1 ENSG00000229539 UBOX5-AS1 PANK2
GH20F003156 1.2 ENCODE 10 +51.6 51632 4.2 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 UBOX5 RN7SL555P ZNF343 VPS16 ITPA ENSG00000229539 UBOX5-AS1 FASTKD5 GC20P003124
GH20F003178 1.2 FANTOM5 10 +72.2 72210 0.3 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 RN7SL555P UBOX5-AS1 C20orf194 PTPRA AVP OXT PIR45599 GC20P003173
GH20F002663 1.1 ENCODE 9.9 -442.8 -442777 1.9 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 CEBPZ ZNF343 RN7SL555P UBOX5-AS1 NOP56 IDH3B SNORD57
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBOX5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UBOX5-AS1 Gene

Chromosome:
20
Start:
3,106,911 bp from pter
End:
3,150,867 bp from pter
Size:
43,957 bases
Orientation:
Plus strand

Genomic View for UBOX5-AS1 Gene

Genes around UBOX5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBOX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBOX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBOX5-AS1 Gene

Proteins for UBOX5-AS1 Gene

Post-translational modifications for UBOX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBOX5-AS1 Gene

Domains & Families for UBOX5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBOX5-AS1 Gene

Function for UBOX5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBOX5-AS1 Gene

Localization for UBOX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UBOX5-AS1 Gene

Pathways & Interactions for UBOX5-AS1 Gene

SuperPathways for UBOX5-AS1 Gene

No Data Available

Interacting Proteins for UBOX5-AS1 Gene

Gene Ontology (GO) - Biological Process for UBOX5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBOX5-AS1 Gene

Transcripts for UBOX5-AS1 Gene

mRNA/cDNA for UBOX5-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBOX5-AS1 Gene

UBOX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UBOX5-AS1 Gene

No ASD Table

Relevant External Links for UBOX5-AS1 Gene

GeneLoc Exon Structure for
UBOX5-AS1
ECgene alternative splicing isoforms for
UBOX5-AS1

Expression for UBOX5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UBOX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UBOX5-AS1 Gene

This gene is overexpressed in Testis (x4.4).

SOURCE GeneReport for Unigene cluster for UBOX5-AS1 Gene:

Hs.129448
genes like me logo Genes that share expression patterns with UBOX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UBOX5-AS1 Gene

Orthologs for UBOX5-AS1 Gene

Evolution for UBOX5-AS1 Gene

ENSEMBL:
Gene Tree for UBOX5-AS1 (if available)
TreeFam:
Gene Tree for UBOX5-AS1 (if available)

No data available for Orthologs for UBOX5-AS1 Gene

Paralogs for UBOX5-AS1 Gene

No data available for Paralogs for UBOX5-AS1 Gene

Variants for UBOX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBOX5-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1046334 -- 3,110,127(-) CAAGA(C/T)GTGCT intron-variant, reference, synonymous-codon, utr-variant-3-prime
rs10579307 -- 3,127,060(+) AAAAA(-/AAA)GGACA intron-variant
rs10720 -- 3,109,870(+) GGCAG(G/T)GGGGG intron-variant, utr-variant-3-prime
rs11087566 -- 3,108,709(+) GGGAG(G/T)ATCGC intron-variant, utr-variant-3-prime
rs111313505 -- 3,144,631(+) GGCTT(-/CAA)CAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UBOX5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3645031 CNV loss 21293372
nsv1127811 CNV deletion 24896259
nsv1136497 CNV deletion 24896259
nsv180149 CNV deletion 16902084
nsv521437 CNV loss 19592680
nsv524482 CNV gain 19592680
nsv526273 CNV loss 19592680
nsv585276 CNV gain 21841781
nsv833897 CNV loss 17160897
nsv833898 CNV gain+loss 17160897

Relevant External Links for UBOX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBOX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UBOX5-AS1 Gene

Disorders for UBOX5-AS1 Gene

Relevant External Links for UBOX5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBOX5-AS1

No disorders were found for UBOX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBOX5-AS1 Gene

Publications for UBOX5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for UBOX5-AS1 Gene

Sources for UBOX5-AS1 Gene

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