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Aliases for UBN2 Gene

Aliases for UBN2 Gene

  • Ubinuclein 2 2 3 5
  • KIAA2030 4

External Ids for UBN2 Gene

Previous GeneCards Identifiers for UBN2 Gene

  • GC07P138568
  • GC07P138912
  • GC07P133226

Summaries for UBN2 Gene

GeneCards Summary for UBN2 Gene

UBN2 (Ubinuclein 2) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is UBN1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBN2 Gene

Genomics for UBN2 Gene

Regulatory Elements for UBN2 Gene

Genomic Location for UBN2 Gene

139,229,565 bp from pter
139,329,421 bp from pter
99,857 bases
Plus strand

Genomic View for UBN2 Gene

Genes around UBN2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBN2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBN2 Gene

Proteins for UBN2 Gene

  • Protein details for UBN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • A4D1S2
    • Q2YDY4
    • Q6P1K0
    • Q86XN9
    • Q8N7D1

    Protein attributes for UBN2 Gene

    1347 amino acids
    Molecular mass:
    146089 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAC05362.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=EAL24038.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for UBN2 Gene


neXtProt entry for UBN2 Gene

Proteomics data for UBN2 Gene at MOPED

Post-translational modifications for UBN2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UBN2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for UBN2 Gene

Domains & Families for UBN2 Gene

Protein Domains for UBN2 Gene


Suggested Antigen Peptide Sequences for UBN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the ubinuclein family.
  • Belongs to the ubinuclein family.
genes like me logo Genes that share domains with UBN2: view

No data available for Gene Families for UBN2 Gene

Function for UBN2 Gene

Phenotypes for UBN2 Gene

genes like me logo Genes that share phenotypes with UBN2: view

Animal Model Products

miRNA for UBN2 Gene

miRTarBase miRNAs that target UBN2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for UBN2 Gene

Localization for UBN2 Gene

Subcellular locations from

Jensen Localization Image for UBN2 Gene COMPARTMENTS Subcellular localization image for UBN2 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 2
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for UBN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 23580065
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with UBN2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for UBN2 Gene

Pathways & Interactions for UBN2 Gene

SuperPathways for UBN2 Gene

No Data Available

Interacting Proteins for UBN2 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: Q6ZU65-UBN2_HUMAN ENSP00000418648 for UBN2 Gene via I2D STRING

Gene Ontology (GO) - Biological Process for UBN2 Gene


No data available for Pathways by source and SIGNOR curated interactions for UBN2 Gene

Drugs & Compounds for UBN2 Gene

No Compound Related Data Available

Transcripts for UBN2 Gene

Unigene Clusters for UBN2 Gene

Ubinuclein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UBN2 Gene

No ASD Table

Relevant External Links for UBN2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UBN2 Gene

mRNA expression in normal human tissues for UBN2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for UBN2 Gene

This gene is overexpressed in Heart (35.4), Serum (17.2), and Esophagus (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for UBN2 Gene

SOURCE GeneReport for Unigene cluster for UBN2 Gene Hs.153458

mRNA Expression by UniProt/SwissProt for UBN2 Gene

Tissue specificity: Expressed in several cell lines tested, including primary and transformed cell lines.
genes like me logo Genes that share expression patterns with UBN2: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for UBN2 Gene

Orthologs for UBN2 Gene

This gene was present in the common ancestor of animals.

Orthologs for UBN2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia UBN2 35
  • 92.63 (n)
  • 93.38 (a)
UBN2 36
  • 93 (a)
(Canis familiaris)
Mammalia UBN2 35
  • 93.16 (n)
  • 93.66 (a)
UBN2 36
  • 93 (a)
(Mus musculus)
Mammalia Ubn2 35
  • 89.95 (n)
  • 91.78 (a)
Ubn2 16
Ubn2 36
  • 92 (a)
(Pan troglodytes)
Mammalia UBN2 35
  • 99.75 (n)
  • 99.7 (a)
UBN2 36
  • 98 (a)
(Rattus norvegicus)
Mammalia Ubn2 35
  • 89.57 (n)
  • 91.13 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 80 (a)
-- 36
  • 85 (a)
(Ornithorhynchus anatinus)
Mammalia UBN2 36
  • 77 (a)
(Gallus gallus)
Aves UBN2 35
  • 77.43 (n)
  • 76.76 (a)
UBN2 36
  • 73 (a)
(Anolis carolinensis)
Reptilia UBN2 36
  • 67 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3197 35
ubn2 35
  • 63.52 (n)
  • 63.1 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.15765 35
(Danio rerio)
Actinopterygii ubn2 35
  • 57.24 (n)
  • 55.88 (a)
ubn2 36
  • 36 (a)
UBN2 (1 of 2) 36
  • 39 (a)
fruit fly
(Drosophila melanogaster)
Insecta yemalpha 36
  • 19 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
Species with no ortholog for UBN2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for UBN2 Gene

Gene Tree for UBN2 (if available)
Gene Tree for UBN2 (if available)

Paralogs for UBN2 Gene

Paralogs for UBN2 Gene

(1) SIMAP similar genes for UBN2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with UBN2: view

Variants for UBN2 Gene

Sequence variations from dbSNP and Humsavar for UBN2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs17160850 - 139,293,909(+) TACAG(C/G)CAGGA intron-variant, reference, missense
rs1061574 -- 139,305,058(-) ATTCC(A/C/G)TGATA intron-variant, utr-variant-3-prime
rs2278061 -- 139,260,731(+) TAAAT(C/G)TTCAT intron-variant
rs2278062 -- 139,260,983(+) ATTTA(C/G)AAAAG intron-variant
rs2355149 -- 139,244,347(+) ATTAC(A/G)TTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UBN2 Gene

Variant ID Type Subtype PubMed ID
esv2735212 CNV Deletion 23290073
dgv2141e1 CNV Complex 17122850
esv2206384 CNV Deletion 18987734

Variation tolerance for UBN2 Gene

Residual Variation Intolerance Score: 23.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.93; 59.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UBN2 Gene

HapMap Linkage Disequilibrium report
Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UBN2 Gene

Disorders for UBN2 Gene

Relevant External Links for UBN2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for UBN2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBN2 Gene

Publications for UBN2 Gene

  1. Human UBN1 is an ortholog of yeast Hpc2p and has an essential role in the HIRA/ASF1a chromatin-remodeling pathway in senescent cells. (PMID: 19029251) Banumathy G. … Adams P.D. (Mol. Cell. Biol. 2009) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naA^ve to therapy. (PMID: 23580065) Pieragostino D. … Del Boccio P. (Mol Biosyst 2013) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3

Products for UBN2 Gene

Sources for UBN2 Gene

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