UBL5 Gene
protein-coding GIFtS : 53
GCID: GC19 P009938
ubiquitin-like 5
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Aliasesfor UBL5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ubiquitin-Like 5 1 2 HUB12 5 Beacon1 Ubiquitin-Like Protein 52
Export aliases for UBL5 gene to outside databases Previous GC identifers: GC19P010060 GC19P010161 GC19P009783 GC19P009799 GC19P009766 GC19P009520
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Summariesfor UBL5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for UBL5 : This gene encodes a member of a group of proteins similar to ubiquitin. The encoded protein is not thought to degrade proteins like ubiquitin but to affect their function through being bound to target proteins by an isopeptide bond. The gene product has been studied as a link to predisposition to obesity based on its expression in Psammomys obesus, the fat sand rat, which is an animal model for obesity studies. Variation in this gene was found to be significantly associated with some metabolic traits (PMID: 15331561) but not associated with childhood obesity (PMID: 19189687). Pseudogenes of this gene are located on chromosomes 3, 5 and 17. Multiple alternatively spliced variants, encoding the same protein, have been identified. (provided by RefSeq, Jan 2013) Gene Wiki entry for UBL5
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Genomic Viewsfor UBL5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011295.11 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the UBL5 gene promoter: CREB Elk-1 Pax-5 AP-1 deltaCREB ATF-2 STAT3 c-Jun LCR-F1 E47 Other transcription factors Search SABiosciences Chromatin IP Primers for UBL5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat UBL5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2 UBL5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P009938: view genomic region
(about GC identifiers )
Start:
9,938,568 bp from pter
End:
9,940,797 bp from pter
Size:
2,230 bases
Orientation:
plus strand
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Proteinsfor UBL5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1 (See
protein sequence )Recommended Name: Ubiquitin-like protein 5 Size : 73 amino acids; 8547 Da
Subunit : Interacts with CLK1, CLK3 and CLK4
Subcellular location : Cytoplasm
1 PDB 3D structure from and Proteopedia for UBL5 :1P0R (3D)
 
Secondary accessions : Q2NL89Explore the universe of human proteins at neXtProt for UBL5: NX_Q9BZL1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BZL1 UBL5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001041706.1 NP_077268.1 ENSEMBL proteins: ENSP00000468656 ENSP00000351492 ENSP00000466910 ENSP00000467663 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
UBL5 for ontologies About GeneDecksing UBL5 Antibody Products: Assay Products for UBL5:
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Protein
Domains / Familiesfor UBL5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
UBL5 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9BZL1 ProtoNet protein and cluster: Q9BZL1
1 Blocks protein family : IPB000626 Ubiquitin domain UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1 Similarity : Contains 1 ubiquitin-like domain
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Functionfor UBL5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): UBL5 (NM_024292 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UBL5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UBL5
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND --
UBL5 for ontologies About GeneDecksing 6 GenomeRNAi human phenotypes for UBL5 :
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Pathways & Interactionsfor UBL5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UBL5 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/47 Interacting proteins for UBL5 (Q9BZL1 2 , 3 ENSP00000351492 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 47 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008150 biological_process
ND --
UBL5 for ontologies About GeneDecksing
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Drugs & Compoundsfor UBL5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for UBL5 Search CenterWatch for drugs/clinical trials and news about UBL5
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Transcriptsfor UBL5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for UBL5 gene (2 alternative transcripts): NM_001048241.2 NM_024292.3 Unigene Cluster for UBL5:
Ubiquitin-like 5 Hs.534477 [show with all ESTs ] Unigene Representative Sequence: BQ924266 8 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000586895 ENST00000358666 (uc002mmi.2 uc002mmj.1 ) ENST00000590068 ENST00000589960 ENST00000593087 ENST00000588595 ENST00000588141 ENST00000589372 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): UBL5 (NM_024292 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UBL5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UBL5
Additional cDNA sequence: AF313915.1 AK128885.1 AK311889.1 BC007053.1 BC110839.1 BT007355.1
20 DOTS entries : DT.97858080 DT.448016
DT.121504701 DT.100670834 DT.121504698 DT.100670832 DT.99955281 DT.91775031 DT.121504695 DT.121504693 DT.121504715 DT.121504720 DT.100670829 DT.100670833 DT.100670836 DT.121504709 DT.121504713 DT.121504727 DT.95354129 DT.97865281 24/370 AceView cDNA sequences (see all 370 ):
CB113914 AI719437 R98380 AI369744 BM876552 CA502897 BM784424 AA226340 CR593093 BQ421216 BP375512 CD676888 BQ221631 CD523456 BE336891 AA861810 F29996 AA010642 CB242938 BE858122 N99973 AW163422 BM693246 AA316722 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for UBL5 (see all 9 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 SP1 :         -       -         SP2 :         -       -   -       SP3 :         -       -   -       SP4 :               -   -       SP5 :               -   -      
ECgene alternative splicing isoforms for UBL5
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Expression for UBL5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section UBL5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image UBL5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Kidney Renal Vesicle Kidney Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See UBL5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for UBL5 SOURCE GeneReport for Unigene cluster: Hs.534477 UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1 Tissue specificity : Ubiquitous. Highest level of expression in heart, skeletal muscle, kidney, liver, iris andlymphoblasts SABiosciences Custom PCR Arrays for UBL5 Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat UBL5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UBL5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UBL5
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Orthologsfor UBL5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for UBL5 gene from 6/24 species (see all 24 ) About this table
ENSEMBL Gene Tree for UBL5 (if available)TreeFam Gene Tree for UBL5 (if available)
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Paralogsfor UBL5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for UBL5 gene
UBL5 for paralogs About GeneDecksing 4 Pseudogenes.org Pseudogenes for UBL5 PGOHUM00000248725 PGOHUM00000237026 PGOHUM00000237642 PGOHUM00000235540
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Genomic Variantsfor UBL5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for UBL5 (9938568 - 9940797 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for UBL5: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UBL5
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Disorders
/ Diseasesfor UBL5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
UBL5 for disorders About GeneDecksing
OMIM gene information: 606849
OMIM disorders : --8 diseases for UBL5 : About MalaCards obesity autism spectrum disorder amyotrophic lateral sclerosis lateral sclerosis hepatocellular carcinoma schizophrenia carcinoma malaria Genetic Association Database (GAD): UBL5 Human Genome Epidemiology (HuGE) Navigator: UBL5 (18 documents) Export disorders for UBL5 gene to outside databases
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Publicationsfor UBL5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for UBL5 gene, integrated from 9 sources (see all 25 ): (articles sorted by number of sources associating them with UBL5) Utopia : connect your pdf to the dynamic world of online information
Structural analysis of UBL5, a novel ubiquitin-like modifier. (PubMed id 12824502) 1 , 2 , 9 McNally T....Reilly R.M. (2003) Isolation of a ubiquitin-like (UBL5) gene from a screen identifying highly expressed and conserved iris genes. (PubMed id 11161819) 1 , 2 , 9 Friedman J.S.... Walter M.A. (2001) Genetic variation in BEACON influences quantitative variation in metabolic syndrome-related phenotypes. (PubMed id 15331561) 1 , 4 Jowett J.B....Blangero J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Beacon interacts with cdc2/cdc28-like kinases. (PubMed id 12705895) 1 , 2 Kantham L.... Collier G. (2003) Beacon-like/ubiquitin-5-like immunoreactivity is highly expressed in human hypothalamus and increased in haloperidol-treated schizophrenics and a rat model of schizophrenia. (PubMed id 18191906) 1 , 9 Bernstein H.G....Bogerts B. (2008) Identification of sequence variants in the UBL5 (ubiquitin-like 5 or BEACON) gene in obese children by PCR-SSCP: no evidence for association with obesity. (PubMed id 19189687) 1 , 9 Sentinelli F....Baroni M.G. (2008) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724) 1 Udeshi N.D....Carr S.A. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011)
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External Searches for UBL5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UBL5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing UBL5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing UBL5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for UBL5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for UBL5 gene: Search GeneIP for patents involving UBL5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor UBL5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for UBL5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for UBL5 Browse OriGene genome-wide validated SYBR primer pairs OriGene Protein Over-expression Lysate for UBL5 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for UBL5 OriGene 3'-UTR Clone for UBL5 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for UBL5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for UBL5 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for UBL5 OriGene Custom Protein Services for UBL5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat UBL5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing UBL5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat UBL5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat UBL5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat UBL5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat UBL5
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Recombinant Protein for UBL5
UBL5 Proteins, Antibodies, CLIAs, and ELISAs
Search ThermoFisher Antibodies for UBL5
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat UBL5
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Aliases for UBL5
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Disorders / Diseases for UBL5
Domains / Families for UBL5
Drugs / Compounds for UBL5
Expression for UBL5
Function for UBL5
Genomic Views for UBL5
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Pathways / Interactions for UBL5
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Transcripts for UBL5
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