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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

UBL5 Gene

protein-coding   GIFtS: 53
GCID: GC19P009938

ubiquitin-like 5

 Explore 8 diseases affiliated with
UBL5 via our new
 Human Malady Compendium 
Biological research products
for UBL5
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ubiquitin-Like 51 2
HUB12 5
Beacon1
Ubiquitin-Like Protein 52

External Ids:    HGNC: 137361   Entrez Gene: 592862   Ensembl: ENSG000001982587   OMIM: 6068495   UniProtKB: Q9BZL13   

Export aliases for UBL5 gene to outside databases

Previous GC identifers: GC19P010060 GC19P010161 GC19P009783 GC19P009799 GC19P009766 GC19P009520


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for UBL5:
This gene encodes a member of a group of proteins similar to ubiquitin. The encoded protein is not thought to degrade
proteins like ubiquitin but to affect their function through being bound to target proteins by an isopeptide bond. The
gene product has been studied as a link to predisposition to obesity based on its expression in Psammomys obesus, the
fat sand rat, which is an animal model for obesity studies. Variation in this gene was found to be significantly
associated with some metabolic traits (PMID: 15331561) but not associated with childhood obesity (PMID: 19189687).
Pseudogenes of this gene are located on chromosomes 3, 5 and 17. Multiple alternatively spliced variants, encoding the
same protein, have been identified. (provided by RefSeq, Jan 2013)

Gene Wiki entry for UBL5


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011295.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the UBL5 gene promoter:
         CREB   Elk-1   Pax-5   AP-1   deltaCREB   ATF-2   STAT3   c-Jun   LCR-F1   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUBL5 promoter sequence
   Search SABiosciences Chromatin IP Primers for UBL5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UBL5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13.2

UBL5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
UBL5 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P009938:  view genomic region     (about GC identifiers)

Start:
9,938,568 bp from pter      End:
9,940,797 bp from pter
Size:
2,230 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1 (See protein sequence)
Recommended Name: Ubiquitin-like protein 5  
Size: 73 amino acids; 8547 Da
Subunit: Interacts with CLK1, CLK3 and CLK4
Subcellular location: Cytoplasm
1 PDB 3D structure from and Proteopedia for UBL5:
1P0R (3D)    
Secondary accessions: Q2NL89

Explore the universe of human proteins at neXtProt for UBL5: NX_Q9BZL1

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9BZL1

  • UBL5 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001041706.1  NP_077268.1  

    ENSEMBL proteins: 
     ENSP00000468656   ENSP00000351492   ENSP00000466910   ENSP00000467663  

    Human Recombinant Protein Products: 
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    Novus Biologicals UBL5 Lysates
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    ProSpec Recombinant Protein for UBL5
    Uscn Proteins for UBL5

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA11161819


    UBL5 for ontologies           About GeneDecksing



    UBL5 Antibody Products: 
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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    UBL5 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR000626 Ubiquitin

    Graphical View of Domain Structure for InterPro Entry Q9BZL1

    ProtoNet protein and cluster: Q9BZL1

    1 Blocks protein family: IPB000626 Ubiquitin domain

    UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1
    Similarity: Contains 1 ubiquitin-like domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    Browse MicroRNA Expression Plasmids
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--


    UBL5 for ontologies           About GeneDecksing


    6 GenomeRNAi human phenotypes for UBL5:
     Decreased homologous recombina  Decreased influenza A virus in  Decreased viability of wild-ty  Increased cell death HMECs cel 
     Increased gamma-H2AX phosphory  Wnt reporter downregulated 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UBL5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/47 Interacting proteins for UBL5 (Q9BZL12, 3 ENSP000003514924) via UniProtKB, MINT, STRING, and/or I2D (see all 47)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SART1O432902, 3, ENSP000003104484MINT-8336584 I2D: score=4 STRING: ENSP00000310448
    WDR83Q9BRX92, ENSP000002427964MINT-8337629 MINT-8332108 STRING: ENSP00000242796
    CLK4Q9HAZ13, ENSP000003169484I2D: score=3 STRING: ENSP00000316948
    CLK1P497593, ENSP000003268304I2D: score=2 STRING: ENSP00000326830
    BUD31P412233, ENSP000002229694I2D: score=1 STRING: ENSP00000222969
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--


    UBL5 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for UBL5
    Search CenterWatch for drugs/clinical trials and news about UBL5 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for UBL5 gene (2 alternative transcripts): 
    NM_001048241.2  NM_024292.3  

    Unigene Cluster for UBL5:

    Ubiquitin-like 5
    Hs.534477  [show with all ESTs]
    Unigene Representative Sequence: BQ924266
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000586895 ENST00000358666(uc002mmi.2 uc002mmj.1) ENST00000590068
    ENST00000589960 ENST00000593087 ENST00000588595 ENST00000588141 ENST00000589372


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    Inhib. RNA
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    Additional cDNA sequence: 

    AF313915.1 AK128885.1 AK311889.1 BC007053.1 BC110839.1 BT007355.1 

    20 DOTS entries:

    DT.97858080  DT.448016  DT.121504701  DT.100670834  DT.121504698  DT.100670832  DT.99955281  DT.91775031 
    DT.121504695  DT.121504693  DT.121504715  DT.121504720  DT.100670829  DT.100670833  DT.100670836  DT.121504709 
    DT.121504713  DT.121504727  DT.95354129  DT.97865281 

    24/370 AceView cDNA sequences (see all 370):

    CB113914 AI719437 R98380 AI369744 BM876552 CA502897 BM784424 AA226340 
    CR593093 BQ421216 BP375512 CD676888 BQ221631 CD523456 BE336891 AA861810 
    F29996 AA010642 CB242938 BE858122 N99973 AW163422 BM693246 AA316722 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for UBL5 (see all 9)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5
    SP1:                          -                 -                     
    SP2:                          -                 -     -               
    SP3:                          -                 -     -               
    SP4:                                            -     -               
    SP5:                                            -     -               


    ECgene alternative splicing isoforms for UBL5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    UBL5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    UBL5 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyRenal VesicleKidney
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See UBL5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for UBL5

    SOURCE GeneReport for Unigene cluster: Hs.534477

    UniProtKB/Swiss-Prot: UBL5_HUMAN, Q9BZL1
    Tissue specificity: Ubiquitous. Highest level of expression in heart, skeletal muscle, kidney, liver, iris and
    lymphoblasts

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    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for UBL5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for UBL5 gene from 6/24 species (see all 24)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ubl51 , 5 ubiquitin-like 51, 5 88.58(n)1
    100(a)1
      9 (7.60 cM)5
    661771  NM_025401.31  NP_079677.11 
     206428785 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:663881 zgc:66388 83.8(n)
    94.44(a)
      394116  NM_201141.1  NP_957435.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG34503   -- 86(a)   42D1   --
    worm
    (Caenorhabditis elegans)
    Secernentea ubl-56
    Ubiquitin-like protein 5
    81(a)
    1 ↔ 1
    I(5607825-5608843)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT3G451801 ubiquitin family protein 69.91(n)
    79.17(a)
      823654  NM_114387.1  NP_190104.1 
    rice
    (Oryza sativa)
    Liliopsida Os12g01431501 hypothetical protein 73.61(n)
    80.56(a)
      9269502  NM_001189859.1  NP_001176788.1 


    ENSEMBL Gene Tree for UBL5 (if available)
    TreeFam Gene Tree for UBL5 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for UBL5 gene

    UBL5 for paralogs           About GeneDecksing


    4 Pseudogenes.org Pseudogenes for UBL5
    PGOHUM00000248725 PGOHUM00000237026 PGOHUM00000237642 PGOHUM00000235540


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/63 NCBI SNPs in UBL5 are shown (see all 63    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1154037061,2
    --9936614(+) CCAGGC/TTTGTC 2 -- us2k11Minor allele frequency- T:0.01WA 118
    rs1853084241,2
    --9936621(+) TGTCCG/TTAACC 2 -- us2k10--------
    rs1460161971,2
    --9936711(+) AAGGAC/TGGTCC 2 -- us2k10--------
    rs1901195751,2
    --9936821(+) TCGCAA/GGCATT 2 -- us2k10--------
    rs1483054131,2
    --9936919(+) AAATAC/TGTAAA 2 -- us2k10--------
    rs1508610061,2
    --9937045(+) TAAAGA/GCCGGG 2 -- us2k10--------
    rs1392959211,2
    --9937186(+) GGTGGA/GGGGCG 2 -- us2k10--------
    rs1455965031,2
    --9937220(+) GGCGGC/TTGAGG 2 -- us2k10--------
    rs124615151,2
    C,F,H,--9937271(+) agcccT/Agatca 2 -- us2k12Minor allele frequency- A:0.50WA CSA 4
    rs1815535111,2
    --9937348(+) AAATTA/TAAAAA 2 -- us2k10--------

    HapMap Linkage Disequilibrium report for UBL5 (9938568 - 9940797 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for UBL5: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UBL5
    DNA2.0 Custom Variant and Variant Library Synthesis for UBL5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    UBL5 for disorders           About GeneDecksing

    OMIM gene information: 606849    OMIM disorders: --

    8 diseases for UBL5:    About MalaCards
    obesity    autism spectrum disorder    amyotrophic lateral sclerosis    lateral sclerosis
    hepatocellular carcinoma    schizophrenia    carcinoma    malaria

    Genetic Association Database (GAD): UBL5
    Human Genome Epidemiology (HuGE) Navigator: UBL5 (18 documents)

    Export disorders for UBL5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for UBL5 gene, integrated from 9 sources (see all 25):
    (articles sorted by number of sources associating them with UBL5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Structural analysis of UBL5, a novel ubiquitin-like modifier. (PubMed id 12824502)1, 2, 9 McNally T....Reilly R.M. (2003)
    2. Isolation of a ubiquitin-like (UBL5) gene from a screen identifying highly expressed and conserved iris genes. (PubMed id 11161819)1, 2, 9 Friedman J.S.... Walter M.A. (2001)
    3. Genetic variation in BEACON influences quantitative variation in metabolic syndrome-related phenotypes. (PubMed id 15331561)1, 4 Jowett J.B....Blangero J. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Beacon interacts with cdc2/cdc28-like kinases. (PubMed id 12705895)1, 2 Kantham L.... Collier G. (2003)
    6. Beacon-like/ubiquitin-5-like immunoreactivity is highly expressed in human hypothalamus and increased in haloperidol-treated schizophrenics and a rat model of schizophrenia. (PubMed id 18191906)1, 9 Bernstein H.G....Bogerts B. (2008)
    7. Identification of sequence variants in the UBL5 (ubiquitin-like 5 or BEACON) gene in obese children by PCR-SSCP: no evidence for association with obesity. (PubMed id 19189687)1, 9 Sentinelli F....Baroni M.G. (2008)
    8. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    9. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 59286 HGNC: 13736 AceView: UBL5 Ensembl:ENSG00000198258 euGenes: HUgn59286
    ECgene: UBL5 H-InvDB: UBL5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
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    About This Section
    NameDescription
    PharmGKB entry for UBL5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
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    Patent Information for UBL5 gene:
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