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UBL4A Gene

protein-coding GIFtS: 57

GC0XM153365

ubiquitin-like 4A
(Previous name: ubiquitin-like 4 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: UBL4)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
DX254E ^², ⁵
DXS254E ^¹, ², ³
G6PD ^²
GDX ^¹, ², ³, ⁵
OTTHUMP00000015407 ^²
OTTHUMP00000061462 ^²
UBL4 ^², ³, ⁵

Descriptions
Ubiquitin-like protein GDX ^³
ubiquitin-like 4 ^¹, ²
ubiquitin-like 4A ^²

External Ids
HGNC: 12505¹
Entrez Gene: 8266²
UniProtKB: P11441³
Ensembl: ENSG00000102178⁷

Search outside databases for aliases for UBL4A gene

Previous GC identifer: GC0XM153276

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for UBL4A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the UBL4A gene

Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28

UBL4A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XM153365: (about GC identifiers)

Start:	153,365,250 bp from pter
End:	153,368,136 bp from pter
Size:	2,887 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000023.9 NT_011726.13

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UBL4A_HUMAN, P11441 (See protein sequence)

Recommended Name: Ubiquitin-like protein 4A

Size: 157 amino acids; 17777 Da

PDB structures from and Proteopedia :

2DZI (3D)

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_055050.1

ENSEMBL proteins:

ENSP00000358667 ENSP00000358674

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (UBL4A)
	Human Recombinant Proteins from Abnova (UBL4A)

OriGene Purified Recombinant Human Protein: UBL4A

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	18029348
GO:0005737	cytoplasm	IDA	18029348

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Antibodies for UBL4A:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for UBL4A
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (UBL4A), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (UBL4A)
	Novus Biologicals Antibodies for UBL4A

Assays for UBL4A:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry P11441

ProtoNet protein and cluster: P11441

1 Blocks protein family: IPB000626 Ubiquitin domain

UniProtKB/Swiss-Prot: UBL4A_HUMAN, P11441

Similarity: Contains 1 ubiquitin-like domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (UBL4A)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (UBL4A)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014235

Applied Biosystems Silencer® siRNAs for UBL4A

Sigma-Aldrich siRNA and siRNA Panels for UBL4A

Sigma-Aldrich shRNA for UBL4A

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for UBL4A
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_014235
Myc/DDK tagged cDNA clone in CMV expression vector: NM_014235
untagged cDNA clones in CMV expression vector (see all 2): AK000405

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_014235

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0019787	small conjugating protein ligase activity	TAS	2829204

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

5/7 Interacting proteins for UBL4A (P11441² ENSP00000358667³) via UniProtKB, MINT, and/or STRING (see all 7 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
MAP3K3	Q99759²	MINT-48384
G6PD	ENSP00000291567³	STRING (score=.956)
GABRA3	ENSP00000359337³	STRING (score=.852)
L1CAM	ENSP00000359075³	STRING (score=.752)
LAGE3	ENSP00000349923³	STRING (score=.752)

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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006464	protein modification process	TAS	2829204

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for UBL4A

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (UBL4A)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (UBL4A)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_014235

Sigma-Aldrich siRNA and siRNA Panels for UBL4A

Sigma-Aldrich shRNA for UBL4A

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_014235

REFSEQ mRNAs for UBL4A gene:

NM_014235.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_014235

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_014235
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_014235
                                 untagged cDNA clones in CMV expression vector (see all 2): AK000405

Additional cDNA sequence:

AK000405.1 AK293227.1 BC020254.1 BC043346.2 BC053589.1 CR612889.1 CR624483.1 M35604.1

14 DOTS entries:

DT.444636 DT.95342934 DT.100787881 DT.100787879 DT.95143393 DT.121293640 DT.101968200 DT.92325833

DT.100720481 DT.91837290 DT.95248880 DT.100787887 DT.95240862 DT.121294239

24/310 AceView cDNA sequences (see all 310 ):

AI088840 CK826434 BU839341 AA810008 AI685489 BX398438 AI479798 BM673079

BQ918041 BQ232204 CK725169 CR612889 AI373078 CA423533 AI383173 BM830184

BM456776 AK000405 AW291544 BX414252 AI276131 BM759598 BQ926172 AI434158

highest scoring ESTs for UBL4A:

AK000405 AL542646 AW043826 BC043346 BC053589 BE254890 BE867783 BE879985 BF348153 BG029652

Unigene Cluster for UBL4A:

Ubiquitin-like 4A

Hs.76480 [show with all ESTs]

Unigene Representative Sequence: AK000405

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000369653 ENST00000369660

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

UBL4A expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for UBL4A

¹ / ² / ³

4 probe-sets matching UBL4A gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
65942_at²^{, 3}	U95-C	1	1.00	1.00	0.97	1.56	AW043826	0.80	1.00	0.91	1
923_at²^{, 3}	U95-A	2	1.00	0.97	0.99	0.47	J03589	0.20	1.00	0.72	1
221746_at²^{, 3}	U133-A	1	1.00	1.00	--	--	BE543027	0.60	1.00	0.82	1
221746_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TGTGGCCTGC

SOURCE GeneReport for Unigene cluster: Hs.76480
Expression variation in blood from EXPOLDB for UBL4A

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for UBL4A gene from 5/8 species (see all 8 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	UBL4A¹	--	ubiquitin-like 4A	88.1(n) 89.61(a)	612563 XM_850295.1 XP_855388.1
chimpanzee (Pan troglodytes)	UBL4A¹	--	ubiquitin-like 4A	100(n) 100(a)	473855 XM_529229.2 XP_529229.2
cow (Bos taurus)	UBL4A¹	--	ubiquitin-like 4A	86.11(n) 87.82(a)	504533 NM_001034214.1 NP_001029386.1
rat (Rattus norvegicus)	Ubl4¹	--	ubiquitin-like 4	84.93(n) 88.54(a)	293864 XM_215228.4 XP_215228.1
mouse (Mus musculus)	Ubl4^{1, 5}	X (29.90 cM)⁵	ubiquitin-like 4^{1, 5}	85.56(n)¹ 89.81(a)¹	27643¹ NM_145405.1¹ NP_663380.1¹ AB039174⁵ AB039175⁵ (see all 20)

About this table Species with no ortholog for UBL4A

ENSEMBL Gene Tree for UBL4A

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for UBL4A gene

UBL4B²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/16 NCBI SNPs in UBL4A are shown (see all 16 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 24)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
--	rs7051615^1,2	A,C,F,H	153366361(+)	`GTCACG/ACTTGG`	1	--	ut3¹		5		MN EU EA WA	604
	rs1050047^1,2	A,C,F,H	153366645(-)	`AGGCCG/AAGTGA`	1	--	ut3¹ ese³		8		EU EA WA NA	774
	rs7057286^1,2	A,C,F,H	153366981(+)	`TATGAC/TGATGA`	1	--	ut3¹		4		EU EA WA	412
	rs11689^1,2	C,F,H	153365573(+)	`GCCTAG/ACTAAT`	1	--	ut3¹		4		EU EA WA	418
	rs1063451^1,2	F	153366082(-)	`CATGGG/ACTGGG`	1	--	ut3¹		3		MN NA	366
	rs3174486^1,2	H	153366291(-)	`CTTGTT/CTCGTC`	1	--	ut3¹ ese³		5		MN EU EA WA	604
	rs5945433^1,2	A,C,F,H	153367224(+)	`AGTGGG/TGGGGG`	1	--	int¹ trp³		4		EU EA WA	416
--	rs41311392^1,2	--	153365883(+)	`GCAGGA/TGGGCC`	1	--	ut3¹		0	--	--	--	--
--	rs35118433^1,2	--	153366737(+)	`GTCAC-/CTGAGG`	1	--	ut3¹		0	--	--	--	--
--	rs11550366^1,2	--	153365283(+)	`CTGGGC/GGGCAT`	1	--	ut3¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for UBL4A (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 312070

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/13 PubMed articles for UBL4A gene (see all 13 ):

A 'housekeeping' gene on the X chromosome encodes a protein similar to ubiquitin. (PubMed id 2829204)^{2, 3, 4} Toniolo D.... Alcalay M. (1988)
Ubl4b, an X-derived retrogene, is specifically expressed in post-meiotic germ cells in mammals. (PubMed id 16872915)^{2, 3} Yang F....Wang P.J. (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{3, 4} Olsen J.V....Mann M. (2006)
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. (PubMed id 16916647)^{3, 4} Kim S.C.... Zhao Y. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Long-range sequence analysis in Xq28: thirteen known and six candidate genes in 219.4 kb of high GC DNA between the RCP/GCP and G6PD loci. (PubMed id 8733135)^{3, 4} Chen E.Y....D'Urso M. (1996)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)³ Barbe L....Andersson-Svahn H. (2008)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Partial purification and characterization of the messenger RNA for human glucose-6-phosphate dehydrogenase. (PubMed id 6533418)³ Toniolo D....Luzzatto L. (1984)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 8266	HGNC: 12505	AceView: UBL4	Ensembl:ENSG00000102178	euGenes: HUgn8266
ECgene: UBL4A	H-InvDB: UBL4A

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for UBL4A
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for UBL4A:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for UBL4A-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for UBL4A		Antibodies for UBL4A
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for UBL4A		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (UBL4A)
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	Antibodies (UBL4A)

	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for UBL4A

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Antibodies for UBL4A

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UBL4A Gene

protein-coding GIFtS: 57

Aliases &
Descriptions
for UBL4A

Summaries
for UBL4A

Genomic Location
for UBL4A

Proteins
for UBL4A

Protein Domains/
Families
for UBL4A

Gene Function
for UBL4A

Pathways & Interactions
for UBL4A

Drugs & Compounds
for UBL4A

Transcripts
for UBL4A

Expression
for UBL4A

Orthologs
for UBL4A

Paralogs
for UBL4A

SNPs/Variants
for UBL4A

Disorders & Mutations
for UBL4A

Medical News
for UBL4A

Publications
for UBL4A

Search for UBL4A

Genome Databases showing UBL4A

Other Databases showing UBL4A

Specialized Databases showing UBL4A

Licensable Technologies
for UBL4A

Services
for UBL4A

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

UBL4A Gene

protein-coding GIFtS: 57

Aliases & Descriptionsfor UBL4A

Summariesfor UBL4A

Genomic Locationfor UBL4A

Proteinsfor UBL4A

Protein Domains/Familiesfor UBL4A

Gene Functionfor UBL4A

Pathways & Interactionsfor UBL4A

Drugs & Compoundsfor UBL4A

Transcriptsfor UBL4A

Expression for UBL4A

Orthologsfor UBL4A

Paralogsfor UBL4A

SNPs/Variantsfor UBL4A

Disorders & Mutationsfor UBL4A

Medical Newsfor UBL4A

Publicationsfor UBL4A

Search for UBL4A

Genome Databases showing UBL4A

Other Databases showing UBL4A

Specialized Databases showing UBL4A

Licensable Technologiesfor UBL4A

Servicesfor UBL4A

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for UBL4A

Summaries
for UBL4A

Genomic Location
for UBL4A

Proteins
for UBL4A

Protein Domains/
Families
for UBL4A

Gene Function
for UBL4A

Pathways & Interactions
for UBL4A

Drugs & Compounds
for UBL4A

Transcripts
for UBL4A

Expression
for UBL4A

Orthologs
for UBL4A

Paralogs
for UBL4A

SNPs/Variants
for UBL4A

Disorders & Mutations
for UBL4A

Medical News
for UBL4A

Publications
for UBL4A

Licensable Technologies
for UBL4A

Services
for UBL4A