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UBL3 Gene

protein-coding GIFtS: 54

GC13M029236

ubiquitin-like 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: PNSC1)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
DKFZP434K151 ^¹
DKFZp434K151 ^²
FLJ32018 ^¹, ²
HCG-1 ^¹, ²
HsMUB ^³
MUB ^³
PNSC1 ^², ³

Descriptions
Membrane-anchored ubiquitin-fold protein ^³
Protein HCG-1 ^³
ubiquitin-like 3 ^²

External Ids
HGNC: 12504¹
Entrez Gene: 5412²
UniProtKB: O95164³
Ensembl: ENSG00000122042⁷

Search outside databases for aliases for UBL3 gene

Previous GC identifers: GC13M028318 GC13M024318 GC13M029268 GC13M028136

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Gene Wiki entry for UBL3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the UBL3 gene

Entrez Gene cytogenetic band: 13q12-q13 Ensembl cytogenetic band: 13q12.3 HGNC cytogenetic band: 13q12-q13

UBL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure

GeneLoc location for GC13M029236: (about GC identifiers)

Start:	29,236,542 bp from pter
End:	29,322,715 bp from pter
Size:	86,174 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000013.9 NT_024524.13

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UBL3_HUMAN, O95164 (See protein sequence)

Recommended Name: Ubiquitin-like protein 3 precursor

Size: 117 amino acids; 13157 Da

Subcellular location: Cell membrane; Lipid-anchor (By similarity)

PDB structures from and Proteopedia :

2GOW (3D)

Secondary accessions: Q5RL72 Q5VZS0 Q6FIG8 Q96SG7

REFSEQ proteins: NP_009037.1

ENSEMBL proteins:

ENSP00000370055 ENSP00000382442

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (UBL3)
	Human Recombinant Proteins from Abnova (UBL3)

OriGene Purified Recombinant Human Protein: UBL3

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	IDA	11256614
GO:0005886	plasma membrane	IEA	--

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Antibodies for UBL3:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for UBL3
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (UBL3), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (UBL3)
	Novus Biologicals Antibody for UBL3

Assays for UBL3:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry O95164

ProtoNet protein and cluster: O95164

1 Blocks protein family: IPB000626 Ubiquitin domain

UniProtKB/Swiss-Prot: UBL3_HUMAN, O95164

Similarity: Contains 1 ubiquitin-like domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (UBL3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (UBL3)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007106

Applied Biosystems Silencer® siRNAs for UBL3

Sigma-Aldrich siRNA and siRNA Panels for UBL3

Sigma-Aldrich shRNA for UBL3

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for UBL3
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_007106
Myc/DDK tagged cDNA clone in CMV expression vector: NM_007106
untagged cDNA clone in CMV expression vector: NM_007106

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_007106

Genatlas biochemistry entry for UBL3:

ubiquitin-like protein 3, Drosophila homolog,highly conserved in man and C elegans

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006464	protein modification process	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for UBL3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (UBL3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (UBL3)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007106

Sigma-Aldrich siRNA and siRNA Panels for UBL3

Sigma-Aldrich shRNA for UBL3

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_007106

REFSEQ mRNAs for UBL3 gene:

NM_007106.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_007106

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_007106
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_007106
                                 untagged cDNA clone in CMV expression vector: NM_007106

Additional cDNA sequence:

AF044221.1 AK056580.1 AK307361.1 AK309253.1 AK311846.1 AL080177.1 BC044582.1 BC059385.1

CR533458.1 CR616220.1

13 DOTS entries:

DT.445834 DT.100681183 DT.100783450 DT.95352397 DT.120777901 DT.99951603 DT.99949567 DT.120777923

DT.120778009 DT.91769155 DT.95352395 DT.95356482 DT.91739663

24/307 AceView cDNA sequences (see all 307 ):

AA376753 N20041 BM683532 BM721598 BU683096 CA312862 CR616220 CA389150

BM980660 AI342281 BM667282 BX109420 AA490497 BM678533 AI252639 BQ215497

BM974929 BX507395 AI598045 CA397679 T35676 BM129174 BM782563 AI953948

highest scoring ESTs for UBL3:

AL080177 AA081968 AA149707 AA346700 AA376139 AF044221 AK056580 AU099162 AV724319 AW026070

Unigene Cluster for UBL3:

Ubiquitin-like 3

Hs.145575 [show with all ESTs]

Unigene Representative Sequence: NM_007106

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000380680 ENST00000399526

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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UBL3 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for UBL3

¹ / ² / ³

5 probe-sets matching UBL3 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
40839_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AL080177	1.00	1.00	1.00	1
201534_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AF044221	0.80	1.00	0.91	1
201535_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_007106	0.60	1.00	0.82	1
201534_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
201535_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks UBL3 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
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About these images

CGAP SAGE TAG: GAAAAATACA

SOURCE GeneReport for Unigene cluster: Hs.145575
Expression variation in blood from EXPOLDB for UBL3
UniProtKB/Swiss-Prot: UBL3_HUMAN, O95164
Tissue specificity: Ubiquitous

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for UBL3 gene from 5/12 species (see all 12 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	UBL3¹	--	ubiquitin-like 3	97.72(n) 100(a)	607436 XM_844415.1 XP_849508.1
chimpanzee (Pan troglodytes)	UBL3¹	--	ubiquitin-like 3	100(n) 100(a)	736889 XM_001139173.1 XP_001139173.1
cow (Bos taurus)	UBL3¹	--	ubiquitin-like 3	93.16(n) 100(a)	526950 NM_001038144.1 NP_001033233.1
rat (Rattus norvegicus)	Ubl3¹	--	ubiquitin-like 3	87.46(n) 99.15(a)	363869 NM_001015030.1 NP_001015030.1
mouse (Mus musculus)	Ubl3^{1, 5}	5⁵	ubiquitin-like 3^{1, 5}	88.32(n)¹ 99.15(a)¹	24109¹ NM_011908.2¹ NP_036038.1¹ AF044222⁵ AF044223⁵ (see all 21)

About this table Species with no ortholog for UBL3

ENSEMBL Gene Tree for UBL3

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/528 NCBI SNPs in UBL3 are shown (see all 528 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 167)

AB	SNP ID	Valid	Chr 13 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs278037^1,2	A,C,F,H,O	29322627(-)	`TGAGAG/AGAAAC`	1	--	ut5¹ ese³		11		NA EA MN EU WA	2316
	rs1058650^1,2	A,C,F,H	29238585(-)	`TGTGCA/GGAAAT`	1	--	ut3¹ ese³		14		NA MN EA EU WA	2242
	rs4385989^1,2	C,F,H	29239030(+)	`TTTTAG/ATGCAA`	1	--	ut3¹ ese³		12		EU EA WA NS NA	666
	rs9314976^1,2	C,F,H	29236359(+)	`GCATAT/CTAAAT`	1	--	ng5¹		16		EU EA WA NS NA	1074
	rs4769773^1,2	C,F,H	29238094(+)	`GTTCTA/GTATAC`	1	--	ut3¹ ese³		7		EU EA WA NA	560
	rs10492458^1,2	C,F,H	29237472(+)	`ATTCAC/TATTTC`	1	--	ut3¹		16		NS EU EA WA NA	1086
--	rs2234413^1,2	A,C	29322530(-)	`GGGGAC/GGGGAA`	1	--	ut5¹ ese³ trp³		0	--	--	--	--
	rs7986022^1,2	F,H	29237459(+)	`CAACAC/GTAACA`	1	--	ut3¹		4		EU EA WA	418
	rs11839427^1,2	A,C	29322658(+)	`CTCCTC/TCACTT`	1	--	ut5¹ trp³		0	--	--	--	--
--	rs17073849^1,2	F	29237348(+)	`GAGTAA/TTCAGA`	1	--	ut3¹ ese³		3		NA	142

About this table

HapMap Linkage Disequilibrium images for UBL3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604711

1 PharmGKB disease relationship for UBL3 gene

Disease	PharmGKB Relations	PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1	FA GN	12086872

About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/13 PubMed articles for UBL3 gene (see all 13 ):

Cloning, mapping and expression of UBL3, a novel ubiquitin-like gene. (PubMed id 10375635)^{2, 3, 4} Chadwick B.P.... Frischauf A.-M. (1999)
MUBS: a family of ubiquitin-fold proteins that are plasma membrane- anchored by prenylation. (PubMed id 16831869)^{3, 4} Downes B.P.... Vierstra R.D. (2006)
The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)^{3, 4} Dunham A.... Ross M.T. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)^{3, 4} Wiemann S.... Poustka A. (2001)
The LIFEdb database in 2006. (PubMed id 16381901)³ Mehrle A....Wiemann S. (2006)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)³ Kimura K.... Sugano S. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)³ Wiemann S....Poustka A. (2004)
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12086872)⁷ Yeoh E.J....Downing J.R. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 5412	HGNC: 12504	AceView: UBL3	Ensembl:ENSG00000122042	euGenes: HUgn5412
ECgene: UBL3	H-InvDB: UBL3

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for UBL3
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for UBL3:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for UBL3-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for UBL3		Antibodies for UBL3
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for UBL3		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (UBL3)
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	Antibodies (UBL3)

	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for UBL3

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UBL3 Gene

protein-coding GIFtS: 54

Aliases &
Descriptions
for UBL3

Summaries
for UBL3

Genomic Location
for UBL3

Proteins
for UBL3

Protein Domains/
Families
for UBL3

Gene Function
for UBL3

Pathways & Interactions
for UBL3

Drugs & Compounds
for UBL3

Transcripts
for UBL3

Expression
for UBL3

Orthologs
for UBL3

Paralogs
for UBL3

SNPs/Variants
for UBL3

Disorders & Mutations
for UBL3

Medical News
for UBL3

Publications
for UBL3

Search for UBL3

Genome Databases showing UBL3

Other Databases showing UBL3

Specialized Databases showing UBL3

Licensable Technologies
for UBL3

Services
for UBL3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

UBL3 Gene

protein-coding GIFtS: 54

Aliases & Descriptionsfor UBL3

Summariesfor UBL3

Genomic Locationfor UBL3

Proteinsfor UBL3

Protein Domains/Familiesfor UBL3

Gene Functionfor UBL3

Pathways & Interactionsfor UBL3

Drugs & Compoundsfor UBL3

Transcriptsfor UBL3

Expression for UBL3

Orthologsfor UBL3

Paralogsfor UBL3

SNPs/Variantsfor UBL3

Disorders & Mutationsfor UBL3

Medical Newsfor UBL3

Publicationsfor UBL3

Search for UBL3

Genome Databases showing UBL3

Other Databases showing UBL3

Specialized Databases showing UBL3

Licensable Technologiesfor UBL3

Servicesfor UBL3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for UBL3

Summaries
for UBL3

Genomic Location
for UBL3

Proteins
for UBL3

Protein Domains/
Families
for UBL3

Gene Function
for UBL3

Pathways & Interactions
for UBL3

Drugs & Compounds
for UBL3

Transcripts
for UBL3

Expression
for UBL3

Orthologs
for UBL3

Paralogs
for UBL3

SNPs/Variants
for UBL3

Disorders & Mutations
for UBL3

Medical News
for UBL3

Publications
for UBL3

Licensable Technologies
for UBL3

Services
for UBL3