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Aliases & Descriptions for UBE4B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E4 1 , 2 HDNB1 2 , 3 KIAA0684 1 , 2 , 3 OTTHUMP00000001726 2 OTTHUMP00000001727 2 UBOX3 1 , 2 UFD2 1 , 2 , 3
Descriptions Homozygously deleted in neuroblastoma 1 3 Ubiquitin fusion degradation protein 2 3 homologous to yeast UFD2 2 homozygously deleted in neuroblastoma-1 2 ubiquitin-fusion degradation protein 2 2 ubiquitination factor E4B 2 ubiquitination factor E4B (UFD2 homolog, yeast) 2 ubiquitination factor E4B (homologous to yeast UFD2) 1 , 2
Search outside databases for aliases for UBE4B genePrevious GC identifers: GC01P010054 GC01P009937 GC01P009702 GC01P009803 GC01P009802
Summaries for UBE4B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE4B : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes an additional conjugation factor, E4, whichis involved in multiubiquitin chain assembly. This gene is also the strongest candidate in theneuroblastoma tumor suppressor genes. Alternatively spliced transcript variants encoding distinctisoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: UBE4B_HUMAN, O95155 Function : Binds to the ubiquitin moieties of preformed conjugates and catalyzes ubiquitin chainassembly in conjunction with E1, E2, and E3 (By similarity)
Gene Wiki entry for UBE4B
Genomic Location for UBE4B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE4B gene Entrez Gene cytogenetic band: 1p36.3 Ensembl cytogenetic band: 1p36.22 HGNC cytogenetic band: 1p36.1 UBE4B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P010027:
(about GC identifiers )
Start:
10,015,603 bp from pter
End:
10,163,884 bp from pter
Size:
148,282 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_021937.18 Proteins for UBE4B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UBE4B_HUMAN, O95155 (See
protein sequence )Recommended Name: Ubiquitin conjugation factor E4 B Size : 1302 amino acids; 146185 Da
Subunit : Interacts with VCP (By similarity)
Subcellular location : Cytoplasm (By similarity)
Secondary accessions : O75169 O95338 Q5SZ12 Q5SZ16 Q96QD4 Q9BYI7Alternative splicing : 3 isoforms : O95155-1 O95155-2 O95155-3
Post-translational modifications:
Proteolytically cleaved by caspases during apoptosis. Cleaved efficiently at Asp-123 by caspase-6and granzyme B. Cleaved with approximately 10-fold less efficiency at Asp-109 by caspase-3 andcaspase-71
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001099032.1 NP_006039.2 ENSEMBL proteins: ENSP00000366362 ENSP00000366358 ENSP00000383693 ENSP00000343001 ENSP00000253251 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBE4B: Assays for UBE4B:
Protein
Domains/ Families for UBE4B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O95155 ProtoNet protein and cluster: O95155
1 Blocks protein family : IPB003613 Zn-finger UniProtKB/Swiss-Prot: UBE4B_HUMAN, O95155 Similarity : Belongs to the ubiquitin conjugation factor E4 familySimilarity : Contains 1 U-box domain
Gene Function for UBE4B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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siRNAs from
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001105562 Applied Biosystems Silencer ® siRNAs for UBE4B Sigma-Aldrich siRNA and siRNA Panels for UBE4B Sigma-Aldrich shRNA Panels and shRNA for UBE4B Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001105562 UniProtKB/Swiss-Prot: UBE4B_HUMAN, O95155 Function : Binds to the ubiquitin moieties of preformed conjugates and catalyzes ubiquitin chainassembly in conjunction with E1, E2, and E3 (By similarity)
Genatlas biochemistry entry for UBE4B :ubiquitination factor E4B (homologous to yeast UFD2),cDNA sequence,expressed in brain,required in4A,related to Drosophila NOSA
7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ube4b) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004842 ubiquitin-protein ligase activity
IEA -- GO:0019899 enzyme binding
ISS --
About this table
Pathways & Interactions for UBE4B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for UBE4B (Your Favorite Gene powered by Ingenuity) 5/34 Interacting proteins for UBE4B (ENSP00000343001 3 O95155 2 ) via UniProtKB, MINT, and/or STRING (see all 34
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for UBE4B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for UBE4B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001105562 Sigma-Aldrich siRNA and siRNA Panels for UBE4B Sigma-Aldrich shRNA Panels and shRNA for UBE4B Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001105562 NM_006048
REFSEQ mRNAs for UBE4B gene (2 alternative transcripts): NM_001105562.1 NM_006048.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001105562 NM_006048
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001105562  
Additional cDNA sequence: AB014584.3 AB028839.1 AF043117.1 AF091093.1 AF331520.1 AK023654.1 AK094380.1 AK292444.1 AK304484.1 BC047890.1 BC093696.1 BC143458.1 BC143460.1 CR603512.1
23 DOTS entries : DT.100797627 DT.92017320 DT.447531 DT.86852536 DT.91839394 DT.97765132 DT.70103412 DT.102832074 DT.405791 DT.75125506 DT.92037238 DT.95167147 DT.95167157 DT.100797625 DT.100797631 DT.121423204 DT.121423230 DT.91745816 DT.92013086 DT.92438560 DT.97786053 DT.75111177 DT.91644723
24/303 AceView cDNA sequences (see all 303
):BP341523 AI952446 BQ962638 AI880573 BM722558 AA575891 BQ001243 BF116124 BE908366 AA281254 BQ687232 AB014584 BM450011 AA444067 BQ019962 BM903907 BP345456 AI375676 AI245548 AI582765 AA444047 CD652138 BC047890 AA361441
highest scoring ESTs for UBE4B :AB014584 AF043117 AA024850 AA024887 AA128625 AA173048 AA224403 AA224453 AA251761 AA257050
Unigene Cluster for UBE4B: Ubiquitination factor E4B (UFD2 homolog, yeast) Hs.632370 [show with all ESTs ] Unigene Representative Sequence: NM_001105562 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for UBE4B (see all 12
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19a · 19b ^ 20a · SP1 :                               -                       SP2 :                                                     SP3 :                                                     SP4 :                                                     SP5 :                                                    
ExUns: 20b ^ 21 ^ 22a · 22b · 22c ^ 23 ^ 24a · 24b ^ 25a · 25b ^ 26 ^ 27a · 27b SP1 :                           SP2 :                           SP3 :             -               SP4 :                           SP5 :                          
About this scheme ECgene alternative splicing isoforms for UBE4B 5 Ensembl transcripts including schematic representations : ENST00000377157
ENST00000377153
ENST00000400901
ENST00000343090
ENST00000253251
Expression for UBE4B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE4B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE4B 1 / 2 / 3
10 probe-sets matching UBE4B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATTAATAAAASOURCE GeneReport for Unigene cluster: Hs.632370 Expression variation in blood from EXPOLDB for UBE4B
UniProtKB/Swiss-Prot: UBE4B_HUMAN, O95155 Tissue specificity : Highest expression in ovary, testis, heart and skeletal muscle. Expression islow in colon, thymus and peripheral blood leukocytes. Almost undetectable in lung and spleen
Orthologs for UBE4B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBE4B gene from 5/12 species (see all 12
)
About this table Species with no ortholog for UBE4B ENSEMBL Gene Tree for UBE4B Paralogs for UBE4B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE4B gene UBE4A 2
SNPs/Variants for UBE4B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE4B (up to first 250kb)
Disorders & Mutations for UBE4B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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--
Medical News for UBE4B (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE4B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/23 PubMed articles for UBE4B gene (see all 23
): Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9734811) 2, 3, 4 Ishikawa K....Ohara O. (1998) The human homologue of the yeast polyubiquitination factor Ufd2p is cleaved by caspase 6 and granzyme B during apoptosis. (PubMed id 11802788) 1, 3, 4 Mahoney J.A.... Rosen A. (2002) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004) Identification and characterization of a 500-kb homozygously deleted region at 1p36.2-p36.3 in a neuroblastoma cell line. (PubMed id 10980605) 3, 4 Ohira M....Nakagawara A. (2000) A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly. (PubMed id 10089879) 2, 3 Koegl M....Jentsch S. (1999) Molecular cloning and expression analysis of five novel genes in chromosome 1p36. (PubMed id 9653645) 3, 4 Onyango P.... Weith A. (1998) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 4 Cantin G.T....Yates J.R. III (2008)
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Genome Databases showing UBE4B
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Ensembl ,
miRBase ,
ECgene ,
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Other Databases showing UBE4B
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Specialized Databases showing UBE4B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UBE4B (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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