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Aliases & Descriptions for UBE2V1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CIR1 2 CROC-1 1 , 2 , 3 CROC1 1 , 2 , 3 OTTHUMP00000031795 2 OTTHUMP00000031796 2 OTTHUMP00000039980 2 UBE2V 2 , 3 UEV-1 1 , 2 , 3 UEV1 2 , 3 , 5 UEV1A 1 , 2
Descriptions DNA-binding protein 2 TRAF6-regulated IKK activator 1 beta Uev1A 3 ubiquitin-conjugating enzyme E2 variant 1 2
Search outside databases for aliases for UBE2V1 genePrevious GC identifers: GC20M048426 GC20M049336 GC20M049383
Summaries for UBE2V1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2V1 : Ubiquitin-conjugating E2 enzyme variant proteins constitute a distinct subfamily within the E2protein family. They have sequence similarity to other ubiquitin-conjugating enzymes but lack theconserved cysteine residue that is critical for the catalytic activity of E2s. The protein encodedby this gene is located in the nucleus and can cause transcriptional activation of the human FOSproto-oncogene. It is thought to be involved in the control of differentiation by altering cellcycle behavior. Multiple alternatively spliced transcripts encoding different isoforms have beendescribed for this gene. A pseudogene has been identified which is also located on chromosome 20.Co-transcription of this gene and the neighboring upstream gene generates a rare transcript(Kua-UEV), which encodes a fusion protein comprised of sequence sharing identity with eachindividual gene product. [provided by RefSeq] UniProtKB/Swiss-Prot: UB2V1_HUMAN, Q13404 Function : Has no ubiquitin ligase activity on its own. The UBE2V1/UBE2N heterodimer catalyzes thesynthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type ofpoly-ubiquitination activates IKK and does not seem to involve protein degradation by theproteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2.Mediates transcriptional activation of target genes. Plays a role in the control of progressthrough the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway andcontributes to the survival of cells after DNA damage
Gene Wiki entry for UBE2V1
Genomic Location for UBE2V1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2V1 gene Entrez Gene cytogenetic band: 20q13.2 Ensembl cytogenetic band: 20q13.13 HGNC cytogenetic band: 20q13.2 UBE2V1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M048132:
(about GC identifiers )
Start:
48,131,068 bp from pter
End:
48,203,678 bp from pter
Size:
72,611 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000020.9 NT_011362.9 Proteins for UBE2V1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2V1_HUMAN, Q13404 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 variant 1 Size : 221 amino acids; 25797 Da
Subunit : Heterodimer with UBE2N. Interacts with TRAF6
Subcellular location : Nucleus. Note=Excluded from the nucleolus
Miscellaneous : In humans, TMEM189/KUA and UBE2V1/UEV1 are adjacent genes which can produceindependent proteins and can also be fused to form a TMEM189-UBE2V1 hybrid protein
PDB structures from and Proteopedia : 2A4D (3D)
 2C2V (3D)
 2HLW (3D)
 
Secondary accessions : Q13403 Q13532 Q96H34 Q9GZT0 Q9GZW1 Q9H4J3 Q9H4J4 Q9UKL1 Q9UM48 Q9UM49 Q9UM50Alternative splicing : 5 isoforms : Q13404-1 Q13404-2 Q13404-4 Q13404-6 Q13404-7 (Additional isoforms seem to exist)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001027459.1 NP_068823.2 NP_071887.1 NP_954595.1 ENSEMBL proteins: ENSP00000360719 ENSP00000360713 ENSP00000360720 ENSP00000379371 ENSP00000360721 ENSP00000360715 ENSP00000346343 ENSP00000360739 ENSP00000360742 ENSP00000340305 ENSP00000344166 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2V1 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBE2V1: Assays for UBE2V1:
Protein
Domains/ Families for UBE2V1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13404 ProtoNet protein and cluster: Q13404
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2V1_HUMAN, Q13404 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2V1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_199144 Applied Biosystems Silencer ® siRNAs for UBE2V1 Sigma-Aldrich siRNA and siRNA Panels for UBE2V1 Sigma-Aldrich shRNA Panels and shRNA for UBE2V1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021988 UniProtKB/Swiss-Prot: UB2V1_HUMAN, Q13404 Function : Has no ubiquitin ligase activity on its own. The UBE2V1/UBE2N heterodimer catalyzes thesynthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type ofpoly-ubiquitination activates IKK and does not seem to involve protein degradation by theproteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2.Mediates transcriptional activation of target genes. Plays a role in the control of progressthrough the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway andcontributes to the survival of cells after DNA damage Induction : Down-regulated during differentiation of cultured colon adenocarcinoma cells
Genatlas biochemistry entry for UBE2V1 :ubiquitin conjugating enzyme E2 variant 1,expressed as at least four isoforms,transcriptionalactivator of FOS promoter,underexpressed in hormone refractory prostate cancer,potentiallyinvolved in the control of differentiation 3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for UBE2V1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2V1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for UBE2V1 5/23 Interacting proteins for UBE2V1 (Q13404 2 ENSP00000344166 3 ) via UniProtKB, MINT, and/or STRING (see all 23
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
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Drugs & Compounds for UBE2V1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for UBE2V1
Transcripts for UBE2V1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_199144 Sigma-Aldrich siRNA and siRNA Panels for UBE2V1 Sigma-Aldrich shRNA Panels and shRNA for UBE2V1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001032288 NM_021988 NM_022442 NM_199144
REFSEQ mRNAs for UBE2V1 gene (4 alternative transcripts): NM_001032288.1 NM_021988.4 NM_022442.4 NM_199144.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001032288 NM_021988 NM_022442 NM_199144
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001032288  
Additional cDNA sequence: AB044550.1 AF049671.1 AF155120.1 AK023028.1 AK304595.1 AK314754.1 AY008273.1 BC000468.2 BC005215.1 BC008944.2 BC018893.2 BC142966.1 BC144612.1 BT007382.1 BX647511.1 BX648147.1 CR590901.1 CR591292.1 CR596196.1 CR596657.1 CR597636.1 CR600012.1 CR601155.1 CR604443.1 CR607429.1 CR609580.1 CR610565.1 CR612804.1 CR614759.1 CR615402.1 CR615526.1 CR617021.1 CR617407.1 CR620542.1 CR622665.1 CR622818.1 CR624783.1 U39360.1 U39361.1 U97280.1 U97281.1
24/67 DOTS entries (see all 67
): DT.87017867 DT.100881989 DT.100881988 DT.86999436 DT.100882004 DT.95190771 DT.91927742 DT.101965698 DT.95279545 DT.97799662 DT.320480 DT.100758874 DT.95108243 DT.100672690 DT.100881995 DT.100881998 DT.120838136 DT.100881974 DT.75156062 DT.100881992 DT.120837985 DT.40305392 DT.97859427 DT.92467447
24/1050 AceView cDNA sequences (see all 1050
):CD672005 CB164261 BG944626 BM994499 BM684455 BX647511 BM974797 CR591292 CR601155 BU860198 BQ004312 BC008944 BG034562 AI084855 BM561707 BQ439854 AA778376 BU507729 U97281 CB152169 BM692858 AA723946 BI091930 BE219066
highest scoring ESTs for UBE2V1 :BI251950 BC005215 BF027716 BQ439854 BQ648631 BU540046 CA453411 U39361 AL036205 AV654677
Unigene Cluster for UBE2V1: Ubiquitin-conjugating enzyme E2 variant 1 Hs.420529 [show with all ESTs ] Unigene Representative Sequence: NM_199203 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2V1 (see all 16
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ SP1 :       -     -       -                                     SP2 :       -     -                                           SP3 :                                                     SP4 :           -                                           SP5 :       -     -   -   -   -                                    
ExUns: 19a · 19b · 19c ^ 20a · 20b · 20c SP1 :             SP2 :             SP3 :             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for UBE2V1 11 Ensembl transcripts including schematic representations : ENST00000371656
ENST00000371650
ENST00000371657
ENST00000396059
ENST00000371658
ENST00000371652
ENST00000354374
ENST00000371674
ENST00000371677
ENST00000340309
ENST00000341698
Expression for UBE2V1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2V1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2V1 1 / 2 / 3
5 probe-sets matching UBE2V1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.420529 Expression variation in blood from EXPOLDB for UBE2V1
UniProtKB/Swiss-Prot: UB2V1_HUMAN, Q13404 Tissue specificity : Highly expressed in thyroid, pancreas, spinal cord, lymph node, trachea,adrenal gland, bone marrow and pancreas. Detected at low levels in heart, breast, placenta, brain,liver, kidney, stomach and lung
Orthologs for UBE2V1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBE2V1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for UBE2V1 ENSEMBL Gene Tree for UBE2V1 Paralogs for UBE2V1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2V1 gene UBE2V2 2
SNPs/Variants for UBE2V1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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Disorders & Mutations for UBE2V1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602995 1 Novoseek disease relationship for UBE2V1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
14.84
3
10329586 (1), 9705497 (1)
About this table 1 PharmGKB disease relationship for UBE2V1 gene About this table
Medical News for UBE2V1 (Possibly Related Articles in
Doctor's Guide )
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Publications for UBE2V1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/26 PubMed articles for UBE2V1 gene (see all 26
): Role of UEV-1, an inactive variant of the E2 ubiquitin-conjugating enzymes, in in vitro differentiation and cell cycle behavior of HT-29- M6 intestinal mucosecretory cells. (PubMed id 9418904) 2, 3, 4 Sancho E.... Thomson T.M. (1998) CROC-1 encodes a protein which mediates transcriptional activation of the human FOS promoter. (PubMed id 9305758) 2, 3, 4 Rothofsky M.L. and Lin S.L. (1997) The products of the yeast MMS2 and two human homologs (hMMS2 and CROC-1) define a structurally and functionally conserved Ubc-like protein family. (PubMed id 9705497) 1, 3, 4 Xiao W.... Wei Y.-F. (1998) Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene. (PubMed id 11076860) 1, 3, 4 Thomson T.M.... Guigo R. (2000) Activation of the IkappaB kinase complex by TRAF6 requires a dimeric ubiquitin-conjugating enzyme complex and a unique polyubiquitin chain. (PubMed id 11057907) 1, 3, 4 Deng L.... Chen Z.J. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 3, 4 Deloukas P....Rogers J. (2001) Role of UEV-1A, a homologue of the tumor suppressor protein TSG101, in protection from DNA damage. (PubMed id 9580084) 3, 4 Thomson T.M.... Arino J. (1998) Substrate modification with lysine 63-linked ubiquitin chains through the UBC13-UEV1A ubiquitin-conjugating enzyme. (PubMed id 17709375) 1, 3 Petroski M.D....Huang J. (2007) Structure and interactions of the ubiquitin-conjugating enzyme variant human Uev1a: implications for enzymatic synthesis of polyubiquitin chains. (PubMed id 16893187) 3 Hau D.D....Spyracopoulos L. (2006)
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Genome Databases showing UBE2V1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBE2V1
(According to HUGE )
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Specialized Databases showing UBE2V1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UBE2V1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for UBE2V1:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009