 |
 | Services
| |
 |
Aliases & Descriptions for UBE2N
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BLU 3 | | EC 6.3.2.19 3 | | MGC131857 2 | | MGC8489 1, 2 | | UBC13 1, 2 | | Ubc13 3 | | UbcH-ben 1, 2 |
| | | Descriptions |
|---|
| Bendless-like ubiquitin-conjugating enzyme 3 | | Ubiquitin carrier protein N 2, 3 | | Ubiquitin-protein ligase N 2, 3 | | bendless-like ubiquitin conjugating enzyme 2 | | ubiquitin-conjugating enzyme E2N 2 | | ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) 2 | ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) 1, 2 | | yeast UBC13 homolog 2 |
|
| | Search outside databases for aliases for UBE2N genePrevious GC identifers: GC12M093423 GC12M094324 GC12M093735 GC12M092305 |
Summaries for UBE2N(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for UBE2N: The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. Studies in mouse suggest that this protein plays a role in DNA postreplication repair. [provided by RefSeq] UniProtKB/Swiss-Prot: UBE2N_HUMAN, P61088Function: The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligase SHPRH in the poly-ubiquitination of PCNA 'Lys-164' upon genotoxic stress, which is required for DNA repairGene Wiki entry for UBE2N |
Genomic Location for UBE2N
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the UBE2N gene 
Entrez Gene cytogenetic band: 12q22 Ensembl cytogenetic band: 12q22 HGNC cytogenetic band: 12q22UBE2N Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M092304:
(about GC identifiers)
Start:
|
92,326,219 bp from pter |
End:
|
92,360,157 bp from pter |
Size:
|
33,939 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000012.10 NT_019546.15
| Proteins for UBE2N
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: UBE2N_HUMAN, P61088 (See
protein sequence)Recommended Name: Ubiquitin-conjugating enzyme E2 N Size: 152 amino acids; 17138 Da
Subunit: Heterodimer with UBE2V2. Interacts with RNF8, RNF168 and SHPRH
PDB structure from and Proteopedia :1J7D (3D)
 2C2V (3D)
 
Secondary accessions: Q16781 Q53Y81Post-translational modifications:
Conjugation to ISG15 impairs formation of the thioester bond with ubiquitin but not interaction with UBE2V21
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003339.1
ENSEMBL proteins: ENSP00000316176 ENSP00000376841
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2N 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for UBE2N: Assays for UBE2N: | Protein
Domains/ Families for UBE2N(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P61088
ProtoNet protein and cluster: P61088 1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes
UniProtKB/Swiss-Prot: UBE2N_HUMAN, P61088Similarity: Belongs to the ubiquitin-conjugating enzyme family | Gene Function for UBE2N
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003348
Applied Biosystems Silencer® siRNAs for UBE2N
Sigma-Aldrich siRNA and siRNA Panels for UBE2N  Sigma-Aldrich shRNA Panels and shRNA for UBE2N  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003348                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003348                                  untagged cDNA clone in CMV expression vector: NM_003348 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003348
UniProtKB/Swiss-Prot: UBE2N_HUMAN, P61088Function: The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligase SHPRH in the poly-ubiquitination of PCNA 'Lys-164' upon genotoxic stress, which is required for DNA repairCatalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysineEnzyme Number (IUBMB): EC 6.3.2.19 4 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Ube2n):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for UBE2N
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2N (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: UBE2N_HUMAN, P61088Pathway: Protein modification; protein ubiquitination Gene Network CentralTM Interacting Genes and Proteins Network for UBE2N 
5/37 Interacting proteins for UBE2N (ENSP000003161763 P610881, 2) via UniProtKB, MINT, and/or STRING (see all 37
)About this table
5/14 Gene Ontology (GO) biological process terms (links to tree view) (see all 14
): About this table
|
Drugs & Compounds for UBE2N(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for UBE2N
|
Transcripts for UBE2N(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003348
Sigma-Aldrich siRNA and siRNA Panels for UBE2N  Sigma-Aldrich shRNA Panels and shRNA for UBE2N  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003348 REFSEQ mRNAs for UBE2N gene: NM_003348.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003348               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003348                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003348                                  untagged cDNA clone in CMV expression vector: NM_003348  Additional cDNA sequence: AL110140.1 BC000396.2 BC003365.1 BC108704.1 BT006873.1 CR592204.1 CR594944.1 CR595779.1 CR598187.1 CR599550.1 CR620151.1 D83004.1 24/25 DOTS entries (see all 25
): DT.453669 DT.100855012 DT.95269516 DT.100668076 DT.75194839 DT.100853696 DT.121176170 DT.100668086 DT.100839675 DT.95269519 DT.100668083 DT.100668084 DT.100767810 DT.95118319 DT.95195219 DT.95219528 DT.95296694 DT.100668079 DT.100870368 DT.121176146 DT.121176159 DT.121176172 DT.121176181 DT.121304279 24/546 AceView cDNA sequences (see all 546
):BQ011070 AA420971 CR595779 BG432626 AA910925 AI674573 AI492085 BM698142 CF130960 BE207615 BG170721 AI287273 BU784291 BE262841 AI420149 AU125145 C00403 BM920802 BU625672 CB108473 BM463602 BU732178 AA573187 CR599550
highest scoring ESTs for UBE2N:D83004 AA058816 AA149476 AA308807 AA325028 AA412631 AA471310 AI343433 AL137979 AU077052 Unigene Cluster for UBE2N: Ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) Hs.524630 [show with all ESTs]Unigene Representative Sequence: NM_003348
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2N (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | · | 7d | |
| SP1: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for UBE2N
2 Ensembl transcripts including schematic representations: ENST00000318066
ENST00000393133
|
Expression for UBE2N
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| UBE2N expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for UBE2N
1 / 2 / 3 8 probe-sets matching UBE2N gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.524630
Expression variation in blood from EXPOLDB for UBE2N |
Orthologs for UBE2N
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for UBE2N gene from 5/28 species (see all 28
)
About this table Species with no ortholog for UBE2N
ENSEMBL Gene Tree for UBE2N | Paralogs for UBE2N(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for UBE2N gene
- UBE2K2 UBE2T2 UBE2NL2
|
SNPs/Variants for UBE2N(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for UBE2N (up to first 250kb)
|
Disorders & Mutations for UBE2N
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603679
|
Medical News for UBE2N(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for UBE2N (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/52 PubMed articles for UBE2N gene (see all 52
):- Cloning and expression of cDNA encoding a human ubiquitin-conjugating enzyme similar to the Drosophila bendless gene product. (PubMed id 8902611)2, 3, 4 Yamaguchi T....Kato S. (1996)
- The RING finger protein RNF8 recruits UBC13 for lysine 63-based self polyubiquitylation. (PubMed id 16215985)1, 3, 4 Plans V.... Thomson T.M. (2006)
- ISG15 modification of Ubc13 suppresses its ubiquitin-conjugating activity. (PubMed id 16112642)1, 3, 4 Takeuchi T. and Yokosawa H. (2005)
- ISG15 modification of ubiquitin E2 Ubc13 disrupts its ability to form thioester bond with ubiquitin. (PubMed id 16122702)3, 4 Zou W.... Zhang D.-E. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The Chfr mitotic checkpoint protein functions with Ubc13-Mms2 to form Lys63-linked polyubiquitin chains. (PubMed id 14562038)3, 4 Bothos J.... Halazonetis T.D. (2003)
- Crystal structure of the human ubiquitin conjugating enzyme complex, hMms2-hUbc13. (PubMed id 11473255)3, 4 Moraes T.F.... Ellison M.J. (2001)
- Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair. (PubMed id 10089880)3, 4 Hofmann R.M. and Pickart C.M. (1999)
- A single Mms2 "key" residue insertion into a Ubc13 pocket determines the interface specificity of a human Lys63 ubiquitin conjugation complex. (PubMed id 15749714)1, 3 Pastushok L....Xiao W. (2005)
- The human T-cell leukemia virus type 1 Tax oncoprotein requires the ubiquitin-conjugating enzyme Ubc13 for NF-kappaB activation. (PubMed id 17942533)1, 3 Shembade N....Harhaj E.W. (2007)
|
Search for UBE2N
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing UBE2N
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing UBE2N
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBE2N(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for UBE2N(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for UBE2N:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for UBE2N  (ubc13) |
| | | | Search Tocris compounds for UBE2N |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|