Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

UBE2M Gene

protein-coding   GIFtS: 66
GCID: GC19M059067

ubiquitin-conjugating enzyme E2M

(Previous names: ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12),...)
 Explore 2 diseases affiliated with
UBE2M via our new
 Human Malady Compendium 
Biological research products
for UBE2M
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ubiquitin-Conjugating Enzyme E2M1 2     NEDD8-Conjugating Enzyme Ubc122
UBC121 2 3     Ubiquitin Carrier Protein M2
HUbc121     Ubiquitin-Protein Ligase M2
Ubiquitin-Conjugating Enzyme E2M (UBC12 Homolog, Yeast)1 2     Yeast UBC12 Homolog2
NEDD8 Carrier Protein2 3     EC 6.3.2.-3
NEDD8 Protein Ligase2 3     Ubiquitin-Conjugating Enzyme E2 M3
Ubiquitin-Conjugating Enzyme E2M (Homologous To Yeast UBC12)1     EC 6.3.28
UBC-RS22     

External Ids:    HGNC: 124911   Entrez Gene: 90402   Ensembl: ENSG000001307257   OMIM: 6031735   UniProtKB: P610813   

Export aliases for UBE2M gene to outside databases

Previous GC identifers: GC19M059965 GC19M059521 GC19M063742 GC19M063758


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for UBE2M:
The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived
proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or
E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the
E2 ubiquitin-conjugating enzyme family. The encoded protein is linked with a ubiquitin-like protein, NEDD8, which can
be conjugated to cellular proteins, such as Cdc53/culin. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081
Function: Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment
to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the
RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell
proliferation

Gene Wiki entry for UBE2M


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the UBE2M gene promoter:
         AML1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidUBE2M promoter sequence
   Search SABiosciences Chromatin IP Primers for UBE2M

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UBE2M


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.43   Ensembl cytogenetic band:  19q13.43   HGNC cytogenetic band: 19q13.43

UBE2M Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
UBE2M gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M059067:  view genomic region     (about GC identifiers)

Start:
59,067,079 bp from pter      End:
59,070,343 bp from pter
Size:
3,265 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081 (See protein sequence)
Recommended Name: NEDD8-conjugating enzyme Ubc12  
Size: 183 amino acids; 20900 Da
Subunit: Interacts with UBA3, DCUN1D1 and RBX1
6 PDB 3D structures from and Proteopedia for UBE2M:
1TT5 (3D)        1Y8X (3D)        2NVU (3D)        3TDU (3D)        3TDZ (3D)        4GAO (3D)    
Secondary accessions: O76069 Q8VC50

Explore the universe of human proteins at neXtProt for UBE2M: NX_P61081

Post-translational modifications:

  • The acetylation of Met-1 is cotranslational, and not regulatory. The N-acetylmethionine increases affinity for DCUN1D1
  • by about 2 orders of magnitude and is crucial for NEDD8 transfer to cullins1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P61081

  • 4 DME Specific Peptides for UBE2M (P61081)
     ELNLPKTC  CLNILREDW  DDLLNFKLVICPDEGFYK  KKASAAQLRIQKDINELNLP 

    UBE2M Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_003960.1  
    ENSEMBL proteins: 
     ENSP00000253023  
    Reactome Protein details: P61081
    Human Recombinant Protein Products: 
    EMD Millipore Purified and/or Recombinant UBE2M Protein
    R&D Systems Recombinant & Natural Proteins for UBE2M (UBE2M/Ubc12)
    Enzo Life Sciences proteins for UBE2M
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: UBE2M
    OriGene Custom Protein Services for UBE2M 
    GenScript Custom Purified and Recombinant Proteins Services for UBE2M
    Novus Biologicals UBE2M Proteins
    Novus Biologicals UBE2M Lysate
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for UBE2M
    Uscn Proteins for UBE2M

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--


    UBE2M for ontologies           About GeneDecksing



    UBE2M Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of UBE2M
    R&D Systems Antibodies for UBE2M (UBE2M/Ubc12)
    Cell Signaling Technology (CST) Antibodies for UBE2M 
    OriGene Antibodies (see all 2): UBE2M
    OriGene Custom Antibody Services for UBE2M 
    GenScript Custom Superior Antibodies Services for UBE2M
    Novus Biologicals UBE2M Antibodies
    Abcam antibodies for UBE2M 
    Uscn Antibodies for UBE2M
    ThermoFisher Antibodies for UBE2M

    Assay Products for UBE2M: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for UBE2M
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for UBE2M


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    UBE2M for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR016135 UBQ-conjugating_enzyme/RWD
     IPR023313 UBQ-conjugating_AS
     IPR000608 UBQ-conjugat_E2

    Graphical View of Domain Structure for InterPro Entry P61081

    ProtoNet protein and cluster: P61081

    1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes

    UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081
    Domain: Both the N-terminal docking peptide and the catalytic core domain must bind the UBA3-NAE1 complex
    simultaneously for optimal transfer of NEDD8
    Similarity: Belongs to the ubiquitin-conjugating enzyme family. UBC12 subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081
    Function: Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment
    to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the
    RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell
    proliferation
    Catalytic activity: ATP + NEDD8 + protein lysine = AMP + diphosphate + protein N-NEDD8yllysine

    Enzyme Numbers (IUBMB): EC 6.3.2.-1 EC 6.3.22

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: UBE2M
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat UBE2M
    8/16 QIAGEN miScript miRNA Assays for microRNAs that regulate UBE2M (see all 16):
    hsa-miR-596 hsa-miR-579 hsa-miR-185* hsa-miR-1908 hsa-miR-650 hsa-miR-633 hsa-miR-3143 hsa-miR-34b
    SwitchGear 3'UTR luciferase reporter plasmidUBE2M 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for UBE2M (see all 7)
    OriGene shRNA RFP: UBE2M
    OriGene siRNA: UBE2M
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat UBE2M

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for UBE2M

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: UBE2M (NM_003969)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for UBE2M
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UBE2M 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for UBE2M
    Search LifeMap BioReagents cell lines for UBE2M

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2M

    Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004842ubiquitin-protein ligase activity TAS9694792
    GO:0005515protein binding IPI19549727
    GO:0005524ATP binding IEA--
    GO:0018169ribosomal S6-glutamic acid ligase activity IDA15361859
    GO:0019788NEDD8 ligase activity IDA19250909


    UBE2M for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for UBE2M:
     Decreased G3BP1 protein expres  Increased cell death HMECs cel  Synthetic lethal with Ras 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Antigen processing: Ubiquitination & Proteasome degradation
    Antigen processing: Ubiquitination & Proteasome degradation1.00
    Polyubiquitination of substrate0.75
    Class I MHC mediated antigen processing & presentation0.83
    Ubiquitin mediated proteolysis0.36
    2Immune System
    Immune System1.00
    Adaptive Immune System0.59
    3Protein Stability
    Protein Stability1.00
    4Ubiquitin-Proteasome Dependent Proteolysis
    Ubiquitin-Proteasome Dependent Proteolysis1.00
    5Remodeling of Adherens Junctions
    Remodeling of Adherens Junctions1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for UBE2M
        Ubiquitin-Proteasome Dependent Proteolysis
    Remodeling of Adherens Junctions

    1 Cell Signaling Technology (CST) Pathway for UBE2M
        Protein Stability

    5        Reactome Pathways for UBE2M
        Antigen processing: Ubiquitination & Proteasome degradation
    Polyubiquitination of substrate
    Adaptive Immune System
    Class I MHC mediated antigen processing & presentation
    Immune System


    1         Kegg Pathway  (Kegg details for UBE2M):
        Ubiquitin mediated proteolysis

    UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081
    Pathway: Protein modification; protein neddylation


    UBE2M for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UBE2M

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/860 Interacting proteins for UBE2M (P610811, 2, 3 ENSP000002530234) via UniProtKB, MINT, STRING, and/or I2D (see all 860)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    CUL1Q136162, 3, ENSP000003268044MINT-6542674 MINT-7945693 MINT-6175286 MINT-7947479 I2D: score=2 STRING: ENSP00000326804
    PSMC4P436862, 3MINT-7945693 MINT-7947479 I2D: score=4 
    NAE1Q135642, 3, ENSP000002908104MINT-6542674 I2D: score=3 STRING: ENSP00000290810
    ACTR2P611602, 3MINT-7945693 MINT-7947479 I2D: score=1 
    MDN1Q9NU222, 3MINT-7945693 MINT-7947479 I2D: score=1 
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006464cellular protein modification process TAS9694792
    GO:0016567protein ubiquitination TAS9694792
    GO:0043525positive regulation of neuron apoptotic process IEA--
    GO:0045116protein neddylation IEA--


    UBE2M for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for UBE2M

    4 HMDB Compounds for UBE2M    About this table
    CompoundSynonyms CAS #PubMed Ids
    Adenosine monophosphate5'-AMP (see all 28)61-19-8--
    Adenosine triphosphate5'-(tetrahydrogen triphosphate) Adenosine (see all 24)56-65-5--
    Phosphoric acidacide phosphorique (FRENCH) (see all 20)7664-38-2--
    Pyrophosphate(4-)Diphosphoric acid ion (see all 10)14000-31-8--
    Search CenterWatch for drugs/clinical trials and news about UBE2M / UBC12 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for UBE2M gene: 
    NM_003969.3  

    Unigene Cluster for UBE2M:

    Ubiquitin-conjugating enzyme E2M
    Hs.406068  [show with all ESTs]
    Unigene Representative Sequence: BM423509
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000253023(uc002qtl.4)

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: UBE2M
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat UBE2M
    8/16 QIAGEN miScript miRNA Assays for microRNAs that regulate UBE2M (see all 16):
    hsa-miR-596 hsa-miR-579 hsa-miR-185* hsa-miR-1908 hsa-miR-650 hsa-miR-633 hsa-miR-3143 hsa-miR-34b
    SwitchGear 3'UTR luciferase reporter plasmidUBE2M 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for UBE2M (see all 7)
    OriGene shRNA RFP: UBE2M
    OriGene siRNA: UBE2M
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat UBE2M
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: UBE2M (NM_003969)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for UBE2M
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UBE2M 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UBE2M
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat UBE2M
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat UBE2M
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UBE2M

    Additional cDNA sequence: 

    AB012191.1 BC058924.1 BT006754.1 

    15 DOTS entries:

    DT.100797337  DT.118760  DT.100797334  DT.95094085  DT.100797341  DT.100797332  DT.121473486  DT.121473585 
    DT.95114897  DT.100797343  DT.95094086  DT.97854659  DT.100797331  DT.121473483  DT.97869739 

    24/250 AceView cDNA sequences (see all 250):

    CR599501 BE257314 BQ934496 AA512976 CR614452 BI063316 AI141340 CF128617 
    BC058924 CR602537 CR600769 AB012191 BM833180 BM710465 CR625272 F30409 
    CB267928 BM700562 CR623679 NM_003969 BM453243 AA588183 BP432687 CR604136 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2M    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
    SP1:                                -                     
    SP2:                                -                     
    SP3:                                                      
    SP4:                                                      


    ECgene alternative splicing isoforms for UBE2M

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    UBE2M expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGATTAAGGT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See UBE2M Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for UBE2M

    SOURCE GeneReport for Unigene cluster: Hs.406068
        SABiosciences Expression via Pathway-Focused PCR Array including UBE2M: 
              Ubiquitination (Ubiquitylation) Pathway in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UBE2M
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat UBE2M
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat UBE2M
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UBE2M
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2M

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for UBE2M gene from 8/32 species (see all 32)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ube2m1 , 5 ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)5
    ubiquitin-conjugating enzyme E2M1
    94.35(n)1
    100(a)1
      7 (7.73 cM)5
    221921  NM_145578.31  NP_663553.11 
     130352385 
    chicken
    (Gallus gallus)
    Aves LOC1008586411 NEDD8-conjugating enzyme Ubc12-like 83.76(n)
    91.03(a)
      100858641  XM_003643841.1  XP_003643889.1 
    lizard
    (Anolis carolinensis)
    Reptilia UBE2M6
    --
    98(a)
    1 ↔ 1
    GL343253.1(119455-130809)
    African clawed frog
    (Xenopus laevis)
    Amphibia 480591772   -- 81.46(n)    48059177 
    zebrafish
    (Danio rerio)
    Actinopterygii wufb58e052 Transcribed sequence with moderate similarity to protein more 81.07(n)    CA469653.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG73751 , 3 ubiquitin conjugating enzyme3
    CG73751
    75(a)3
    73.56(n)1
    76.54(a)1
      66B123
    389161  NM_139930.11  NP_648187.11 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G186001 ubiquitin-conjugating enzyme E2 M 59.89(n)
    63.19(a)
      816375  NM_127416.3  NP_565440.1 
    rice
    (Oryza sativa)
    Liliopsida Os.146562 Oryza sativa (japonica cultivar-group) cDNA cloneJ more 70.79(n)    AK066484.1 


    ENSEMBL Gene Tree for UBE2M (if available)
    TreeFam Gene Tree for UBE2M (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for UBE2M gene
    ENSG000002589842  UBE2F2  
    18 SIMAP similar genes for UBE2M using alignment to 3 protein entries:     UBC12_HUMAN (see all proteins):
    HR6A    UBE2D2    UBE2D4    UBE2D3    UBE2B    UBE2K
    UBE2A    UBE2D1    UBE2F    UBE2E2    UBE2E3    UBE2I
    UBE2N    UBE2E1    UBE2L6    UBE2C    UBE2S    UBE2L3

    UBE2M for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for UBE2M
    PGOHUM00000248853


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/76 NCBI SNPs in UBE2M are shown (see all 76    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1861421551,2
    --59066635(+) CCCGAA/GTGACC 3 -- us2k1 ds50010--------
    rs1146993731,2
    F,--59066701(+) TATTCG/ATGAGA 3 -- us2k1 ds50011Minor allele frequency- A:0.03WA 118
    rs38101251,2
    C,F,--59066730(-) CTATCT/CGAGGC 3 -- ds5001 us2k17Minor allele frequency- C:0.17NA WA EA 366
    rs8953741,2
    C,F,O,A,H,--59066918(-) TACCAG/TGACTG 3 -- us2k1 ds500122Minor allele frequency- T:0.24NA EA MN NS WA CSA 1404
    rs1439102611,2
    --59067057(+) CCCCAA/TAGAAG 3 -- us2k1 ds50010--------
    rs1396823081,2
    --59067182(+) ACAGCA/CCAGAG 3 -- us2k1 ut310--------
    rs1499609211,2
    --59067283(+) ATCACA/GTGGTG 3 -- us2k1 ut310--------
    rs1125531011,2
    C,--59067364(+) GGCCGC/-CCCCC 3 -- us2k1 ut311Minor allele frequency- -:0.50CSA 2
    rs2014961941,2
    F--59067425(+) GCTTGT/CGGCCG 3 -- us2k1 ut311Minor allele frequency- C:0.01EU 351
    rs81050971,2
    C,F,A,H,--59067585(+) TCCTCG/AGGGTT 4 /P us2k1 syn1 ese316Minor allele frequency- A:0.10NS EA NA WA 6520

    HapMap Linkage Disequilibrium report for UBE2M (59067079 - 59070343 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for UBE2M
         3 CNVs: 50240 50238 50239

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UBE2M
    DNA2.0 Custom Variant and Variant Library Synthesis for UBE2M

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    UBE2M for disorders           About GeneDecksing

    OMIM gene information: 603173    OMIM disorders: --

    2 diseases for UBE2M:    About MalaCards
    malaria    neuronitis


    Export disorders for UBE2M gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for UBE2M gene, integrated from 9 sources (see all 58):
    (articles sorted by number of sources associating them with UBE2M)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A new NEDD8-ligating system for cullin-4A. (PubMed id 9694792)1, 2, 3 Osaka F.... Kato S. (1998)
    2. A dominant-negative UBC12 mutant sequesters NEDD8 and inhibits NEDD8 conjugation in vivo. (PubMed id 10828074)1, 2, 9 Wada H.... Kamitani T. (2000)
    3. N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex. (PubMed id 21940857)1, 2 Scott D.C.... Schulman B.A. (2011)
    4. E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification. (PubMed id 19250909)1, 2 Huang D.T....Schulman B.A. (2009)
    5. Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. (PubMed id 15694336)1, 2 Huang D.T....Schulman B.A. (2005)
    6. A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. (PubMed id 15361859)1, 2 Huang D.T.... Schulman B.A. (2004)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    8. Identification of the activating and conjugating enzymes of the NEDD8 conjugation pathway. (PubMed id 10207026)1, 2 Gong L. and Yeh E.T.H. (1999)
    9. The mechanism of poly-NEDD8 chain formation in vitro. (PubMed id 19245792)1, 9 Ohki Y....Chiba T. (2009)
    10. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9040 HGNC: 12491 AceView: UBE2M Ensembl:ENSG00000130725 euGenes: HUgn9040
    ECgene: UBE2M Kegg: 9040 H-InvDB: UBE2M

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for UBE2M Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for UBE2M gene:
    Search GeneIP for patents involving UBE2M

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     EMD Millipore Mono- and Polyclonal Antibodies for the study of UBE2M
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Small Molecules at EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     EMD Millipore Purified and/or Recombinant UBE2M Protein
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for UBE2M (UBE2M/Ubc12)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Recombinant/Natural Proteins for UBE2M (UBE2M/Ubc12)  
     OriGene Antibodies for UBE2M   OriGene shRNA RFP for UBE2M  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for UBE2M   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UBE2M  
     OriGene Protein Over-expression Lysate for UBE2M   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for UBE2M   OriGene 3'-UTR Clone for UBE2M  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2M  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for UBE2M   OriGene Custom Protein Services for UBE2M  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat UBE2M
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UBE2M
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UBE2M
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat UBE2M
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UBE2M
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat UBE2M
     GenScript Custom Purified and Recombinant Proteins Services for UBE2M GenScript cDNA clones with any tag delivered in your preferred vector for UBE2M
     GenScript Custom Assay Services for UBE2M GenScript Custom Superior Antibodies Services for UBE2M
     GenScript Custom overexpressing Cell Line Services for UBE2M CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Antibodies & Assays for UBE2M 

     Regulatory tfbs in UBE2M promoter
     Search Chromatin IP Primers for UBE2M
     RT2 qPCR Primer Assay in human, mouse, rat UBE2M
     GNC Network for UBE2M
     SABiosciences PCR Arrays including human, mouse, rat UBE2M
     Search Tocris compounds for UBE2M
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Proteins for UBE2M
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     UBE2M antibodies
     UBE2M proteins
     UBE2M lysates
     Antibodies for UBE2M
     See all of Abcam's Antibodies, Kits and Proteins for UBE2M
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Recombinant Protein for UBE2M




     UBE2M Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for UBE2M
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2M
     SwitchGear 3'UTR luciferase reporter plasmids for UBE2M
     SwitchGear Promoter luciferase reporter plasmids for UBE2M
     ThermoFisher Antibodies for UBE2M
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UBE2M
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      UBE2M gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4