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Aliases & Descriptions for UBE2M
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 6.3.2.- 3 | | UBC-RS2 2 | | UBC12 1, 2, 3 | | hUbc12 1, 2 |
| | | Descriptions |
|---|
| NEDD8 carrier protein 3 | | NEDD8 protein ligase 3 | | Ubiquitin-conjugating enzyme E2 M 3 | | nedd8-conjugating enzyme Ubc12 2 | | ubiquitin carrier protein M 2 | | ubiquitin-conjugating enzyme E2M 2 | | ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2 | ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12) 1, 2 | | ubiquitin-protein ligase M 2 | | yeast UBC12 homolog 2 |
|
| | Search outside databases for aliases for UBE2M genePrevious GC identifers: GC19M059965 GC19M059521 GC19M063742 |
Summaries for UBE2M(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for UBE2M: The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. The encoded protein is linked with a ubiquitin-like protein, NEDD8, which can be conjugated to cellular proteins, such as Cdc53/culin. [provided by RefSeq] UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081Function: Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferationGene Wiki entry for UBE2M |
Genomic Location for UBE2M
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the UBE2M gene 
Entrez Gene cytogenetic band: 19q13.43 Ensembl cytogenetic band: 19q13.43 HGNC cytogenetic band: 19q13.43UBE2M Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M063758:
(about GC identifiers)
Start:
|
63,758,891 bp from pter |
End:
|
63,762,155 bp from pter |
Size:
|
3,265 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011109.15
| Proteins for UBE2M
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081 (See
protein sequence)Recommended Name: NEDD8-conjugating enzyme Ubc12 Size: 183 amino acids; 20900 Da
Subunit: Interacts with UBA3 and RBX1
PDB structures from and Proteopedia :1TT5 (3D)
 1Y8X (3D)
 2NVU (3D)
 
Secondary accessions: O76069 Q8VC50Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003960.1
ENSEMBL proteins: ENSP00000253023
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2M 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005575 | cellular_component |
ND | -- | About this table
Antibodies for UBE2M: Assays for UBE2M: | Protein
Domains/ Families for UBE2M(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P61081
ProtoNet protein and cluster: P61081 1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes
UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081Domain: Both the N-terminal docking peptide and the catalytic core domain must bind the UBA3-NAE1 complex simultaneously for optimal transfer of NEDD8Similarity: Belongs to the ubiquitin-conjugating enzyme family. UBC12 subfamily | Gene Function for UBE2M
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003969
Applied Biosystems Silencer® siRNAs for UBE2M
Sigma-Aldrich siRNA and siRNA Panels for UBE2M  Sigma-Aldrich shRNA Panels and shRNA for UBE2M  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003969                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003969                                  untagged cDNA clone in CMV expression vector: NM_003969 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003969
UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081Function: Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferationCatalytic activity: ATP + NEDD8 + protein lysine = AMP + diphosphate + protein N-NEDD8yllysineEnzyme Number (IUBMB): EC 6.3.2.- 5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for UBE2M
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2M (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: UBC12_HUMAN, P61081Pathway: Protein modification; protein neddylation Gene Network CentralTM Interacting Genes and Proteins Network for UBE2M 
5/188 Interacting proteins for UBE2M (ENSP000002530233 P610811, 2) via UniProtKB, MINT, and/or STRING (see all 188
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0019941 | modification-dependent protein catabolic process |
IEA | -- | | GO:0043687 | post-translational protein modification |
IEA | -- | | GO:0051246 | regulation of protein metabolic process |
IEA | -- | About this table
|
Drugs & Compounds for UBE2M(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for UBE2M
|
Transcripts for UBE2M(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003969
Sigma-Aldrich siRNA and siRNA Panels for UBE2M  Sigma-Aldrich shRNA Panels and shRNA for UBE2M  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003969 REFSEQ mRNAs for UBE2M gene: NM_003969.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003969               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003969                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003969                                  untagged cDNA clone in CMV expression vector: NM_003969  Additional cDNA sequence: AB012191.1 BC058924.1 BT006754.1 CR592285.1 CR597325.1 CR599501.1 CR600769.1 CR602537.1 CR604136.1 CR611045.1 CR614452.1 CR617667.1 CR623679.1 CR625272.1 14 DOTS entries: DT.100797337 DT.118760 DT.100797334 DT.95094085 DT.100797341 DT.100797332 DT.100797343 DT.121473486 DT.121473585 DT.95114897 DT.95094086 DT.97854659 DT.100797331 DT.121473483 24/250 AceView cDNA sequences (see all 250
):BM680955 BM798750 AW935177 AA512976 BI063316 CR611045 BU508830 BM790155 BM700562 BE257314 CR597325 BM453243 CR614452 BP432687 CR600769 AA588183 F30409 CR599501 BU186068 CR592285 BM854547 AA261836 BX357327 CR617667
highest scoring ESTs for UBE2M:AA092705 AB012191 AL521469 AL530633 AL535436 AL555639 AL575624 AL578088 AW901677 AW901678 Unigene Cluster for UBE2M: Ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) Hs.406068 [show with all ESTs]Unigene Representative Sequence: BM423509
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2M
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | |
| SP1: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for UBE2M
1 Ensembl transcript including schematic representation: ENST00000253023
|
Expression for UBE2M
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| UBE2M expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for UBE2M
1 / 2 / 3 4 probe-sets matching UBE2M gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGATTAAGGT
SOURCE GeneReport for Unigene cluster: Hs.406068
Expression variation in blood from EXPOLDB for UBE2M |
Orthologs for UBE2M
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for UBE2M gene from 5/24 species (see all 24
)
About this table Species with no ortholog for UBE2M
ENSEMBL Gene Tree for UBE2M | Paralogs for UBE2M(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for UBE2M gene
- UBE2F2
|
SNPs/Variants for UBE2M(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
The following additional 32 SNP(s) have been
found in Applied Biosystems data source: (Click
for
Applied Biosystems TaqMan ® Genotyping Assay)
HapMap Linkage Disequilibrium images for UBE2M (up to first 250kb)
|
Disorders & Mutations for UBE2M
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603173
|
Medical News for UBE2M(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for UBE2M (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/24 PubMed articles for UBE2M gene (see all 24
):- A new NEDD8-ligating system for cullin-4A. (PubMed id 9694792)2, 3, 4 Osaka F.... Kato S. (1998)
- A dominant-negative UBC12 mutant sequesters NEDD8 and inhibits NEDD8 conjugation in vivo. (PubMed id 10828074)1, 3, 4 Wada H.... Kamitani T. (2000)
- Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. (PubMed id 15694336)3, 4 Huang D.T....Schulman B.A. (2005)
- A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. (PubMed id 15361859)3, 4 Huang D.T.... Schulman B.A. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Identification of the activating and conjugating enzymes of the NEDD8 conjugation pathway. (PubMed id 10207026)3, 4 Gong L. and Yeh E.T.H. (1999)
- E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification. (PubMed id 19250909)4 Huang D.T....Schulman B.A. (2009)
- SCCRO (DCUN1D1) is an essential component of the E3 complex for neddylation. (PubMed id 18826954)3 Kim A.Y....Singh B. (2008)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)4 Dephoure N.... Gygi S.P. (2008)
- Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)3 Ewing R.M....Figeys D. (2007)
|
Search for UBE2M
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing UBE2M
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing UBE2M
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBE2M(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for UBE2M(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for UBE2M:

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| Antibodies & Assays for UBE2M  (ubc12) |
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Incremental update: 13 Oct 2009
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