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Aliases & Descriptions for UBE2L3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E2-F1 2 , 3 EC 6.3.2.19 3 L-UBC 2 , 3 UBCE7 3 UBCH7 1 , 2 , 3 , 5 UbcH7 3 UbcM4 2
Descriptions Ubiquitin carrier protein L3 3 Ubiquitin-protein ligase L3 3 ubiquitin carrier protein 2 ubiquitin-conjugating enzyme E2L 3 2 ubiquitin-conjugating enzyme UBCH7 2 ubiquitin-protein ligase 2
Search outside databases for aliases for UBE2L3 genePrevious GC identifer: GC22P018620
Summaries for UBE2L3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2L3 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s) andubiquitin-protein ligases (E3s). This gene encodes a member of the E2 ubiquitin-conjugating enzymefamily. This enzyme is demonstrated to participate in the ubiquitination of p53, c-Fos, and theNF-kB precursor p105 in vitro. Two alternatively spliced transcript variants encoding distinctisoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53
Gene Wiki entry for UBE2L3
Genomic Location for UBE2L3
(According to
GeneLoc and/or
HGNC , and/or
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2L3 gene Entrez Gene cytogenetic band: 22q11.21 Ensembl cytogenetic band: 22q11.21 HGNC cytogenetic band: 22q11.2 UBE2L3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P020246:
(about GC identifiers )
Start:
20,251,957 bp from pter
End:
20,308,323 bp from pter
Size:
56,367 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000022.9 NT_011520.11 Proteins for UBE2L3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 L3 Size : 154 amino acids; 17862 Da
Subunit : Binds UBE3A, HEI10, CBL, ZAP70, RNF19A, RNF19B and RNF144B
Caution : PubMed:10760570 reported that UBE2L1, UBE2L2 and UBE2L4 are most likely pseudogenes andthe only expressed member of this subfamily seems to be UBE2L3
PDB structure from and Proteopedia : 1C4Z (3D)
 1FBV (3D)
 
Secondary accessions : P51966 P70653 Q9HAV1
REFSEQ proteins (2 alternative transcripts):
NP_003338.1 NP_937800.1 ENSEMBL proteins: ENSP00000344259 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2L3 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBE2L3: Assays for UBE2L3:
Protein
Domains/ Families for UBE2L3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P68036 ProtoNet protein and cluster: P68036
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2L3
(According to MGI Jun 06 2009, UniProtKB ,
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003347 Applied Biosystems Silencer ® siRNAs for UBE2L3 Sigma-Aldrich siRNA and siRNA Panels for UBE2L3 Sigma-Aldrich shRNA Panels and shRNA for UBE2L3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003347                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003347                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003347  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003347 UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53 Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
Genatlas biochemistry entry for UBE2L3 :ubiquitin conjugating enzyme UBE2L3,homologous to L-UBC (UBE2L1)
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ube2l3) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for UBE2L3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2L3 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2L3 5/61 Interacting proteins for UBE2L3 (P68036 1 , 2 ENSP00000344259 3 ) via UniProtKB, MINT, and/or STRING (see all 61
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for UBE2L3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Transcripts for UBE2L3(GenBank/EMBL/DDBJ Accessions according to
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(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003347 Sigma-Aldrich siRNA and siRNA Panels for UBE2L3 Sigma-Aldrich shRNA Panels and shRNA for UBE2L3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003347 NM_198157
REFSEQ mRNAs for UBE2L3 gene (2 alternative transcripts): NM_003347.2 NM_198157.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003347 NM_198157
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003347                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003347                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003347  
Additional cDNA sequence: AJ000519.1 AK125396.1 AK291083.1 AK293179.1 AK299985.1 AK311761.1 BC053368.1 CR456606.1 CR591815.1 CR593455.1 CR594871.1 CR597825.1 CR602038.1 CR602465.1 CR604504.1 CR607527.1 CR607714.1 CR607739.1 CR608960.1 CR609123.1 CR609763.1 CR610403.1 CR611646.1 CR611871.1 CR612269.1 CR615420.1 CR616187.1 CR618384.1 CR625640.1 CR626405.1 S81003.1 X92962.1
24/43 DOTS entries (see all 43
): DT.449914 DT.97768456 DT.100849248 DT.100849294 DT.120650536 DT.120650589 DT.100687448 DT.100862801 DT.100870772 DT.120786431 DT.95306212 DT.120786832 DT.95306214 DT.100687447 DT.100687442 DT.100851801 DT.95306224 DT.95306272 DT.100643363 DT.100694529 DT.100856729 DT.92461107 DT.92461117 DT.85104849
24/986 AceView cDNA sequences (see all 986
):CR597825 W84311 CB156746 CR616187 AA297878 CA308387 BM672608 CB068460 BU950032 BG152422 AI375811 CB321953 AA297834 AI052814 T31118 BX400707 BU626764 BQ447151 BM807071 Z45714 BU196105 AA069750 AI368098 AU280766
highest scoring ESTs for UBE2L3 :AW006924 S81003 X92962 AA002094 AA026895 AA026896 AA029263 AA029301 AA034949 AA035297
Unigene Cluster for UBE2L3: Ubiquitin-conjugating enzyme E2L 3 Hs.108104 [show with all ESTs ] Unigene Representative Sequence: AK125396 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000342192
Expression for UBE2L3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2L3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2L3 1 / 2 / 3
11 probe-sets matching UBE2L3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.108104 Expression variation in blood from EXPOLDB for UBE2L3
UniProtKB/Swiss-Prot: UB2L3_HUMAN, P68036 Tissue specificity : Ubiquitous, with highest expression in testis
Orthologs for UBE2L3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for UBE2L3 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for UBE2L3 ENSEMBL Gene Tree for UBE2L3 Paralogs for UBE2L3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2L3 gene UBE2L6 2 UBE2S 2 UBE2I 2
SNPs/Variants for UBE2L3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2L3 (up to first 250kb)
Disorders & Mutations for UBE2L3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
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Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
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OMIM: 603721 2 Novoseek disease relationships for UBE2L3 gene
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Medical News for UBE2L3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2L3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/59 PubMed articles for UBE2L3 gene (see all 59
): Fine-mapping, genomic organization, and transcript analysis of the human ubiquitin-conjugating enzyme gene UBE2L3. (PubMed id 9693040) 1, 2, 3, 4 Moynihan T.P....Robinson P.A. (1998) Promoter analysis of the human ubiquitin-conjugating enzyme gene family UBE2L1-4, including UBE2L3 which encodes UbcH7. (PubMed id 10760570) 1, 3, 4 Ardley H.C.... Robinson P.A. (2000) Characterization of a human ubiquitin-conjugating enzyme gene UBE2L3. (PubMed id 8672131) 1, 2, 3 Moynihan T.P....Robinson P.A. (1996) A human ubiquitin conjugating enzyme, L-UBC, maps in the Alzheimer's disease locus on chromosome 14q24.3. (PubMed id 8563171) 1, 3, 4 Robinson P.A.... Markham A.F. (1995) A novel centrosomal ring-finger protein, dorfin, mediates ubiquitin ligase activity. (PubMed id 11237715) 1, 3, 4 Niwa J.... Sobue G. (2001) Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade. (PubMed id 10558980) 1, 3, 4 Huang L.... Pavletich N.P. (1999) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802) 3, 4 Collins J.E.... Dunham I. (2004) A novel RING finger protein, human enhancer of invasion 10, alters mitotic progression through regulation of cyclin B levels. (PubMed id 12612082) 3, 4 Toby G.G.... Golemis E.A. (2003) Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases. (PubMed id 10966114) 3, 4 Zheng N.... Pavletich N.P. (2000)
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Genome Databases showing UBE2L3
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Specialized Databases showing UBE2L3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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