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Aliases & Descriptions for UBE2K
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp564C1216 2 DKFZp686J24237 2 E2(25K) 3 E2-25K 2 , 3 EC 6.3.2.19 3 HIP-2 3 HIP2 2 , 3 HYPG 1 , 2 LIG 2 , 3
Descriptions Huntingtin-interacting protein 2 3 Ubiquitin carrier protein 2 , 3 Ubiquitin-conjugating enzyme E2-25 kDa 2 , 3 Ubiquitin-protein ligase 2 , 3 huntingtin interacting protein 2 1 , 2 ubiquitin-conjugating enzyme E2-25K 2 ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2
Search outside databases for aliases for UBE2K gene
Summaries for UBE2K (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2K : The protein encoded by this gene belongs to the ubiquitin-conjugating enzyme family. This proteininteracts with RING finger proteins, and it can ubiquitinate huntingtin, the gene product forHuntington's disease. Known functions for this protein include a role in aggregate formationof expanded polyglutamine proteins and the suppression of apoptosis in polyglutamine diseases, arole in the dislocation of newly synthesized MHC class I heavy chains from the endoplasmicreticulum, and involvement in foam cell formation. Multiple transcript variants encoding differentisoforms have been identified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Ubiquitinates huntingtin. May mediate foam cellformation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination andsubsequence degradation of p53
Gene Wiki entry for UBE2K (HIP2)
Genomic Location for UBE2K
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4p14 Ensembl cytogenetic band: 4p14 HGNC cytogenetic band: 4p14 UBE2K Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P039377:
(about GC identifiers )
Start:
39,376,205 bp from pter
End:
39,457,977 bp from pter
Size:
81,773 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000004.10 NT_016297.15 Proteins for UBE2K
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 K Size : 200 amino acids; 22407 Da
Subunit : Interacts with RNF138/NARF
Subcellular location : Cytoplasm (By similarity)
PDB structures from and Proteopedia : 1YLA (3D)
 2O25 (3D)
 3E46 (3D)
 3F92 (3D)
 
Secondary accessions : A6NJC1 B2RDF8 O54806 P27924 Q16721 Q9CVV9 Q9Y2D3Alternative splicing : 2 isoforms : P61086-1 P61086-2
Post-translational modifications:
Sumoylation at Lys-14 impairs catalytic activity (By similarity)1
REFSEQ proteins (3 alternative transcripts):
NP_001104582.1 NP_001104583.1 NP_005330.1 ENSEMBL proteins: ENSP00000295963 ENSP00000261427 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA --
About this table Antibodies for UBE2K: Assays for UBE2K:
Protein
Domains/ Families for UBE2K(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P61086 ProtoNet protein and cluster: P61086
UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 Similarity : Belongs to the ubiquitin-conjugating enzyme familySimilarity : Contains 1 UBA domain
Gene Function for UBE2K
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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siRNAs from
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001111112 Applied Biosystems Silencer ® siRNAs for UBE2K Sigma-Aldrich siRNA and siRNA Panels for UBE2K Sigma-Aldrich shRNA Panels and shRNA for UBE2K Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001111112                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001111112                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC006419  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005339 UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Ubiquitinates huntingtin. May mediate foam cellformation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination andsubsequence degradation of p53 Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Induction : By aggregated low-density lipoproteinEnzyme Number (IUBMB): EC 6.3.2.19
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ube2k) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for UBE2K
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for UBE2K (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2K 2 Interacting proteins for UBE2K (P61086 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006511 ubiquitin-dependent protein catabolic process
TAS 8702625 GO:0043687 post-translational protein modification
IEA -- GO:0051246 regulation of protein metabolic process
IEA --
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Drugs & Compounds for UBE2K (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for UBE2K 3 Novoseek chemical compound relationships for UBE2K gene
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Transcripts for UBE2K(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001111112 Sigma-Aldrich siRNA and siRNA Panels for UBE2K Sigma-Aldrich shRNA Panels and shRNA for UBE2K Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001111112 NM_001111113 NM_005339
REFSEQ mRNAs for UBE2K gene (3 alternative transcripts): NM_001111112.1 NM_001111113.1 NM_005339.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001111112 NM_001111113 NM_005339
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001111112                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001111112                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC006419  
Additional cDNA sequence: AB022435.1 AB022436.1 AK093533.1 AK291454.1 AK295846.1 AK307130.1 AK315524.1 AL117568.1 BC022804.1 BC050600.1 BX641089.1 CR606205.1 CR621318.1 U58522.1
20 DOTS entries : DT.453166 DT.97780192 DT.92442814 DT.91742775 DT.95364285 DT.75154564 DT.100718402 DT.95364286 DT.100813999 DT.92442822 DT.95364298 DT.100763089 DT.91812239 DT.91828453 DT.92442819 DT.102834685 DT.40111771 DT.75187719 DT.92442816 DT.95364296
24/407 AceView cDNA sequences (see all 407
):BQ001696 AI080393 CA453659 CF128356 AA747449 AI074875 BM992652 AI240124 AW902374 BC050600 AA344326 AI708378 BQ417090 BX106212 AA588232 AI094629 R29740 AU134343 BQ006001 BI438859 AW316739 AA334798 AA970776 F07267
Unigene Cluster for UBE2K: Ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) Hs.714332 [show with all ESTs ] Unigene Representative Sequence: NM_005339 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2K (see all 6
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 SP1 :         -                     SP2 :       -   -                     SP3 :         -             -   -   -     SP4 :         -   -                   SP5 :         -   -   -                
About this scheme ECgene alternative splicing isoforms for UBE2K 2 Ensembl transcripts including schematic representations : ENST00000295963
ENST00000261427
Expression for UBE2K
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2K expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2K 1 / 2
7 probe-sets matching UBE2K gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGATGTAGAGSOURCE GeneReport for Unigene cluster: Hs.714332 UniProtKB/Swiss-Prot: UBE2K_HUMAN, P61086 Tissue specificity : Expressed in all tissues tested, including spleen, thymus, prostate, testis,ovary, small intestine, colon, peripheral blood leukocytes, T-lymphocytes, monocytes, granulocytesand bone marrow mononuclear cells. Highly expressed in brain, with highest levels found in cortexand striatum and at lower levels in cerebellum and brainstem
Orthologs for UBE2K
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBE2K gene from 5/24 species (see all 24
)
About this table Species with no ortholog for UBE2K ENSEMBL Gene Tree for UBE2K Paralogs for UBE2K (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2K gene UBE2T 2 UBE2NL 2 UBE2N 2
SNPs/Variants for UBE2K (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2K (up to first 250kb)
Disorders & Mutations for UBE2K
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602846 1 Novoseek disease relationship for UBE2K gene
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Medical News for UBE2K (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2K (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/95 PubMed articles for UBE2K gene (see all 95
): Huntingtin is ubiquitinated and interacts with a specific ubiquitin- conjugating enzyme. (PubMed id 8702625) 2, 3, 4 Kalchman M.A.... Hayden M.R. (1996) Induction of ubiquitin-conjugating enzyme by aggregated low density lipoprotein in human macrophages and its implications for atherosclerosis. (PubMed id 10634809) 1, 3, 4 Kikuchi J.... Sakurabayashi I. (2000) E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages. (PubMed id 17873885) 1, 2, 3 Christensen D.E....Klevit R.E. (2007) NARF, an nemo-like kinase (NLK)-associated ring finger protein regulates the ubiquitylation and degradation of T cell factor/lymphoid enhancer factor (TCF/LEF). (PubMed id 16714285) 3, 4 Yamada M.... Shibuya H. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003) Regulation of macrophage-specific gene expression by degenerated lipoproteins. (PubMed id 10675012) 3, 4 Furukawa Y....Sakurabayashi I. (2000) E3 ligase activity of RING finger proteins that interact with Hip-2, a human ubiquitin-conjugating enzyme. (PubMed id 11513855) 1, 3 Lee S.-J.... Kang S. (2001) E2-25K mediates US11-triggered retro-translocation of MHC class I heavy chains in a permeabilized cell system. (PubMed id 16868077) 1, 3 Flierman D.... Chau V. (2006)
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Genome Databases showing UBE2K
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBE2K
(According to HUGE )
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Specialized Databases showing UBE2K (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UBE2K (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for UBE2K:
Antibodies & Assays for UBE2K   (HIP2)
Recombinant Proteins (HIP2 ) Antibodies (HIP2 )
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