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Aliases & Descriptions for UBE2J1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CGI-76 1, 2 | | EC 6.3.2.19 3 | | HSPC153 1, 2 | | HSPC205 2 | | HSU93243 2 | | HSUBC6e 3 | | MGC12555 2 | | NCUBE1 1, 2, 3 | | OTTHUMP00000016852 2 | | Ubc6p 2 |
| | | Descriptions |
|---|
| Non-canonical ubiquitin-conjugating enzyme 1 3 | | Yeast ubiquitin-conjugating enzyme UBC6 homolog E 3 | | non-canonical ubquitin conjugating enzyme 1 2 | | ubiquitin-conjugating enzyme E2, J1 2 | | ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 2 |
|
| | Search outside databases for aliases for UBE2J1 genePrevious GC identifers: GC06M090003 GC06M090032 GC06M090031 |
Summaries for UBE2J1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for UBE2J1: The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. This enzyme is located in the membrane of the endoplasmic reticulum (ER) and may contribute to quality control ER-associated degradation by the ubiquitin-proteasome system. [provided by RefSeq] UniProtKB/Swiss-Prot: UB2J1_HUMAN, Q9Y385Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulumGene Wiki entry for UBE2J1 |
Genomic Location for UBE2J1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the UBE2J1 gene 
Entrez Gene cytogenetic band: 6q15 Ensembl cytogenetic band: 6q15 HGNC cytogenetic band: 6q16.1UBE2J1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M090093:
(about GC identifiers)
Start:
|
90,093,063 bp from pter |
End:
|
90,119,338 bp from pter |
Size:
|
26,276 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007299.12
| Proteins for UBE2J1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: UB2J1_HUMAN, Q9Y385 (See
protein sequence)Recommended Name: Ubiquitin-conjugating enzyme E2 J1 Size: 318 amino acids; 35199 Da
Subcellular location: Endoplasmic reticulum membrane; Single-pass type IV membrane protein
Sequence caution: Sequence=AAF36125.1; Type=Frameshift; Positions=119;
Secondary accessions: A8K3F9 Q5W0N4 Q9BZ32 Q9NQL3 Q9NY66 Q9P011 Q9P0S0 Q9UF10Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_057105.2
ENSEMBL proteins: ENSP00000354684
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for UBE2J1: Assays for UBE2J1: | Protein
Domains/ Families for UBE2J1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9Y385
ProtoNet protein and cluster: Q9Y385 1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes
UniProtKB/Swiss-Prot: UB2J1_HUMAN, Q9Y385Similarity: Belongs to the ubiquitin-conjugating enzyme family | Gene Function for UBE2J1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_016336
Applied Biosystems Silencer® siRNAs for UBE2J1
Sigma-Aldrich siRNA and siRNA Panels for UBE2J1  Sigma-Aldrich shRNA Panels and shRNA for UBE2J1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016021                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016021                                  untagged cDNA clones in CMV expression vector (see all 2): NM_016021 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_016021
UniProtKB/Swiss-Prot: UB2J1_HUMAN, Q9Y385Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulumCatalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysineEnzyme Number (IUBMB): EC 6.3.2.19 2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004842 | ubiquitin-protein ligase activity |
IEA | -- | | GO:0016874 | ligase activity |
IEA | -- | About this table | Pathways & Interactions for UBE2J1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2J1 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: UB2J1_HUMAN, Q9Y385Pathway: Protein modification; protein ubiquitination 5 Interacting proteins for UBE2J1 (ENSP000003546843) via UniProtKB, MINT, and/or STRINGAbout this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0019941 | modification-dependent protein catabolic process |
IEA | -- | | GO:0043687 | post-translational protein modification |
IEA | -- | | GO:0051246 | regulation of protein metabolic process |
IEA | -- | About this table
|
Drugs & Compounds for UBE2J1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for UBE2J1
|
Transcripts for UBE2J1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_016336
Sigma-Aldrich siRNA and siRNA Panels for UBE2J1  Sigma-Aldrich shRNA Panels and shRNA for UBE2J1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_016021 REFSEQ mRNAs for UBE2J1 gene: NM_016021.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_016021               OriGene GFP tagged cDNA clone in CMV expression vector: NM_016021                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016021                                  untagged cDNA clones in CMV expression vector (see all 2): NM_016021  Additional cDNA sequence: AB075487.1 AF151039.1 AF151834.1 AF161502.1 AJ245898.1 AJ420479.1 AJ420522.1 AJ420578.1 AJ420600.1 AK223464.1 AK290574.1 AK300629.1 BC013973.1 CR593056.1 CR608832.1 CR618158.1 U93243.1 13 DOTS entries: DT.452520 DT.91754919 DT.91754932 DT.92035712 DT.100726380 DT.100645848 DT.100645843 DT.91754923 DT.87001128 DT.95224761 DT.101976909 DT.121383951 DT.95141421 24/349 AceView cDNA sequences (see all 349
):AW118565 AW117721 BM984150 AA165621 BM712541 AA553859 AA622355 AA435533 CB997305 BU507628 AI338294 AA676862 W68181 AL525571 CA397036 AA705068 AW296841 BX645216 BX482869 BU509302 BQ009872 CA941012 BU688929 AL538922
highest scoring ESTs for UBE2J1:AA018130 AA044667 AA156816 AA211896 AA371039 AA478628 AA491236 AA574142 AA614686 AA631316 Unigene Cluster for UBE2J1: Ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) Hs.163776 [show with all ESTs]Unigene Representative Sequence: NM_016021
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2J1
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | · | 8d | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for UBE2J1
1 Ensembl transcript including schematic representation: ENST00000361333
|
Expression for UBE2J1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| UBE2J1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for UBE2J1
1 / 2 / 3 14 probe-sets matching UBE2J1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.163776
Expression variation in blood from EXPOLDB for UBE2J1 |
Orthologs for UBE2J1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for UBE2J1 gene from 5/13 species (see all 13
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
UBE2J11 |
-- |
ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, more |
92.19(n) 94.39(a) |
474993 XM_532230.2 XP_532230.2 |
chimpanzee (Pan troglodytes) |
UBE2J11 |
-- |
ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, more |
99.69(n) 99.69(a) |
462883 XM_518636.2 XP_518636.2 |
cow (Bos taurus) |
UBE2J11 |
-- |
ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, more |
93.19(n) 95.6(a) |
539754 XM_866344.2 XP_871437.2 |
rat (Rattus norvegicus) |
Ube2j11 |
-- |
ubiquitin-conjugating enzyme E2, J1 |
88.68(n) 93.28(a) |
297961 XM_216362.4 XP_216362.3 |
mouse (Mus musculus) |
Ube2j11, 5 |
45
|
ubiquitin-conjugating enzyme E2, J11, 5 |
88.16(n)1 92.45(a)1 |
562281 NM_019586.31 NP_062532.21 AI8485275 AJ2458995 (see all 19) |
About this table Species with no ortholog for UBE2J1
ENSEMBL Gene Tree for UBE2J1 | Paralogs for UBE2J1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for UBE2J1 gene
- UBE2J22
|
SNPs/Variants for UBE2J1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for UBE2J1 (up to first 250kb)
|
Disorders & Mutations for UBE2J1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News for UBE2J1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for UBE2J1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/20 PubMed articles for UBE2J1 gene (see all 20
):- Identification of a family of non-canonical ubiquitin-conjugating enzymes structurally related to yeast UBC6. (PubMed id 10708578)1, 2, 3, 4 Lester D.H.... Houston B. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- A role for mammalian Ubc6 homologues in ER-associated protein degradation. (PubMed id 12082160)3, 4 Lenk U....Sommer T. (2002)
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)3, 4 Zhang Q.H....Chen Z. (2000)
- Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093)3, 4 Lai C.H....Lin W. (2000)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)4 Dephoure N.... Gygi S.P. (2008)
- Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross- validation of MS/MS and MS/MS/MS Spectra. (PubMed id 17924679)4 Yu L.-R.... Veenstra T.D. (2007)
- Human homologs of Ubc6p ubiquitin-conjugating enzyme and phosphorylation of HsUbc6e in response to endoplasmic reticulum stress. (PubMed id 16720581)3 Oh R.S....Rommens J.M. (2006)
- TNF-alpha induced c-IAP1/TRAF2 complex translocation to a Ubc6-containing compartment and TRAF2 ubiquitination. (PubMed id 15861135)3 Wu C.J....Ashwell J.D. (2005)
|
Search for UBE2J1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing UBE2J1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing UBE2J1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBE2J1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for UBE2J1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for UBE2J1:

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Incremental update: 13 Oct 2009
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