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UBE2G2 Gene

protein-coding   GIFtS: 63

GC21M045013
ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast)
(Previous name: ubiquitin-conjugating enzyme E2G 2 (homologous to yeast UBC7) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase, and/or 9Nature:405,311-319 and CroW21)
About This Section

Aliases
EC 6.3.2.19 3
UBC7 1, 2, 5
Descriptions
Ubiquitin carrier protein G2 2, 3
Ubiquitin-protein ligase G2 2, 3
human ubiquitin conjugating enzyme G2 9
ubiquitin conjugating enzyme 7 2
ubiquitin conjugating enzyme G2 2
ubiquitin-conjugating enzyme E2G 2 2
ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 2
ubiquitin-conjugating enzyme E2G 2 (homologous to yeast
UBC7) 1, 2
External Ids
HGNC: 124831
Entrez Gene: 73272
UniProtKB: P606043
Ensembl: ENSG000001847877
Search outside databases for aliases for UBE2G2 gene

Previous GC identifers: GC21M042698 GC21M045045

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for UBE2G2:
The modification of proteins with ubiquitin is an important cellular mechanism for targeting
abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes
of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and
ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating
enzyme family. The encoded protein shares 100% sequence identity with the mouse counterpart. This
gene is ubiquitously expressed, with high expression seen in adult muscle. Two alternatively
spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by
RefSeq]

UniProtKB/Swiss-Prot: UB2G2_HUMAN, P60604
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Involved in endoplasmic
reticulum-associated degradation (ERAD)

Gene Wiki entry for UBE2G2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences, Whole Chromsome Sequence According to Nature (Cited Here with Permission):405,311-319 and CroW21)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 21q22.3   Ensembl cytogenetic band:  21q22.3   HGNC cytogenetic band: 21q22.3
Nature(405: 311-319) cytogenetic band:   21q22.3
UBE2G2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 21         GeneLoc Exon Structure

(about GC identifiers)
GC21M045013:   GeneLoc Nature:405,311-319
Start:
45,013,383 bp from pter       31,698,366 bp from centromere
End:
45,046,166 bp from pter 31,731,118 bp from centromere
Size:
32,784 bases 32,753 bases
Orientation:
minus strand minus strand
RefSeq DNA sequence:
NC_000021.7  NT_011515.11  

Whole chromosome sequencing:
cDNA sequence: AF032456
genomic clones: P225L15

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UB2G2_HUMAN, P60604 (See protein sequence)
Recommended Name: Ubiquitin-conjugating enzyme E2 G2  
Size: 165 amino acids; 18566 Da
PDB structures from and Proteopedia :
2CYX (3D)    
Secondary accessions: P56554

REFSEQ proteins (2 alternative transcripts): 
NP_003334.2  NP_872630.1  


ENSEMBL proteins: 
ENSP00000381001 ENSP00000338348 ENSP00000331384 ENSP00000381000 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant UBE2G2 Protein
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Ube2G2)
Human Recombinant Proteins from Abnova (UBE2G2)
               OriGene Purified Recombinant Human Proteins (see all 2): UBE2G2  

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005829 cytosol IDA16780588
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Antibodies for UBE2G2: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of UBE2G2
Sigma-Aldrich Antibodies for UBE2G2
Browse R&D Systems for Antibodies
Antibodies from Abcam (Ube2G2), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (UBE2G2)
Novus Biologicals Antibodies for UBE2G2

Assays for UBE2G2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

2 InterPro domains/families:
 IPR000608 UBQ-conjugat_E2
 IPR016135 UBQ-conjugat/RWD-like


   GeneDecks  UBE2G2 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P60604

ProtoNet protein and cluster: P60604

1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes

UniProtKB/Swiss-Prot: UB2G2_HUMAN, P60604
Similarity: Belongs to the ubiquitin-conjugating enzyme family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2G2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2G2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_003343

              Applied Biosystems Silencer® siRNAs for UBE2G2

              Sigma-Aldrich siRNA and siRNA Panels for UBE2G2  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2G2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003343
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003343
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_003343 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_003343

UniProtKB/Swiss-Prot: UB2G2_HUMAN, P60604
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Involved in endoplasmic
reticulum-associated degradation (ERAD)
Catalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein
N-ubiquityllysine
Enzyme Number (IUBMB): EC 6.3.2.19 

Genatlas biochemistry entry for UBE2G2:
ubiquitin conjugating enzyme,homolog to yeast UBC7,with two transcript,ubiquitously expressed

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004842 ubiquitin-protein ligase activity IEA--
GO:0005515 protein binding IPI17681147
GO:0016874 ligase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for UBE2G2
 Proteolysis Role of Parkin in the Ubiquitin-Proteasomal Pathway

   GeneDecks  UBE2G2 for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  UBE2G2  (Your Favorite Gene powered by Ingenuity) 
 Protein Ubiquitination Pathway
 Hypoxia Signaling in the Cardiovascular System

   GeneDecks  UBE2G2 for the pathways selected above  
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2 Kegg Pathways  (Kegg details for UBE2G2):
 hsa04120 Ubiquitin mediated proteolysis
 hsa05012 Parkinson's disease

   GeneDecks  UBE2G2 for the pathways selected above  
About GeneDecksing
UniProtKB/Swiss-Prot: UB2G2_HUMAN, P60604
Pathway: Protein modification; protein ubiquitination


5/7 Interacting proteins for UBE2G2 (ENSP000003383483 P606041) via UniProtKB, MINT, and/or STRING (see all 7 )

InteractantInteraction Details
GeneCardExternal ID(s)
AMFRQ9UKV51STRING (score=.976) EBI-1051028, EBI-1046367
ALG11Q2TAA51EBI-1051028, EBI-1048799
AUP1Q9Y6791EBI-1051028, EBI-1058701
CORO1AP311461EBI-1051028, EBI-1046676
MALT1Q9UDY81EBI-1051028, EBI-1047372
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3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process TAS9693041
GO:0043687 post-translational protein modification IEA--
GO:0051246 regulation of protein metabolic process IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for UBE2G2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2G2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2G2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_003343

              Sigma-Aldrich siRNA and siRNA Panels for UBE2G2  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2G2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_003343  NM_182688  

REFSEQ mRNAs for UBE2G2 gene (2 alternative transcripts): 

NM_003343.4   NM_182688.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_003343  NM_182688  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003343
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003343
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_003343 

Additional cDNA sequence: BC017241.2 

19 DOTS entries:

DT.121132559  DT.454521  DT.92449943  DT.100840051  DT.40116400  DT.424690  DT.438750  DT.100030109 
DT.121132538  DT.95226324  DT.100778705  DT.100778709  DT.121132556  DT.121132557  DT.92449941  DT.95226297 
DT.100695636  DT.100778710  DT.92449945 

24/379 AceView cDNA sequences (see all 379 ):

AA700565 BM312498 AA659503 CA436766 CK822080 CD367486 BP341530 BU191548 
CK430987 AW731802 AA311312 AA443634 BQ218385 CA748881 AW188157 BC011569 
BU630302 BM480344 BU782522 AW068356 AA449337 BU184932 CR593095 BM353079 

highest scoring ESTs for UBE2G2:

AA100375 AF032456 AI215057 AL038702 AL530398 AL598640 AL603453 AU098906 AW672742 BC001738 

Unigene Clusters for UBE2G2:

Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast)
Hs.529420  [show with all ESTs], Hs.701398  [show with all ESTs]
Unigene Representative Sequences: AK122700, BC017241


GeneLoc Exon Structure

5/8 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2G2 (see all 8 )

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8a · 8b · 8c
SP1:                                      -     -     -     -     -     -                           
SP2:                                      -     -                 -     -                           
SP3:                                      -                                                         
SP4:              -     -     -           -     -     -     -     -     -                           
SP5:                                                                                                

About this scheme

ECgene alternative splicing isoforms for UBE2G2

4 Ensembl transcripts including schematic representations:
ENST00000397904  ENST00000345496  ENST00000330942  ENST00000397903  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

UBE2G2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for UBE2G2

1 / 2 / 3

9 probe-sets matching UBE2G2 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

32236_at2, 3 U95-A 1 1.00 1.00 0.66 1.42 AF032456 0.80 1.00 0.91 1

76889_at2, 3 U95-E 1 1.00 1.00 0.83 0.59 AI215057 0.80 1.00 0.91 1

232755_at2, 3 U133-B 1 1.00 1.00 -- -- AL355686 0.60 1.00 0.82 1

209042_s_at2, 3 U133-A 1 1.00 1.00 -- -- BC001738 0.80 1.00 0.91 1

209041_s_at2, 3 U133-A 1 1.00 1.00 -- -- BG395660 0.60 1.00 0.82 1

232755_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

209042_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

1557053_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

209041_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene clusters: Hs.529420 Hs.701398

Expression variation in blood from EXPOLDB for UBE2G2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for UBE2G2 gene from 5/20 species (see all 20 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
UBE2G21   -- ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 90.29(n)
95.36(a)
611581  XM_535603.2  XP_535603.2 
chimpanzee
(Pan troglodytes)
UBE2G21   -- ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 99.39(n)
100(a)
474042  XM_531493.2  XP_531493.1 
cow
(Bos taurus)
UBE2G21   -- ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 91.52(n)
99.39(a)
614471  NM_001076328.1  NP_001069796.1 
rat
(Rattus norvegicus)
Ube2g21   -- ubiquitin-conjugating enzyme E2G 2 89.49(n)
100(a)
294331  XM_215371.4  XP_215371.3 
mouse
(Mus musculus)
Ube2g21, 5 10 (41.60 cM)5
ubiquitin-conjugating enzyme E2G 21, 5 89.49(n)1
100(a)1
222131  NM_019803.31  NP_062777.21 
 AF2966575  AI8391915  (see all 21)
About this table        Species with no ortholog for UBE2G2

ENSEMBL Gene Tree for UBE2G2
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for UBE2G2 gene
UBE2G12  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/209 NCBI SNPs in UBE2G2 are shown (see all 209 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 111)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 21 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs2353521,2
A,C,F,H,O45013256(-) TGGCAC/TGTTTT 2 -- ng5112Minor allele frequency- T:0.18NA EU EA WA 1000
rs28386771,2
A,C,F,H,O45014195(+) CTACTG/ATATGC 2 -- ut31 ese39Minor allele frequency- A:0.37NA EU EA WA 654
rs10605641,2
A,C,F,H,O45015602(-) AACCAC/TGGCAT 2 -- ut31 ese39Minor allele frequency- T:0.19NA MN EU EA WA 736
rs115691,2
A,C,F,H45015698(-) GGCGCA/GCACAC 2 -- ut316Minor allele frequency- G:0.33MN EU EA WA 770
rs28386911,2
C,F,H,O45047999(+) CACTGC/TAACAT 2 -- ng317Minor allele frequency- T:0.06NA EU EA 441
rs841881,2
A,C,F,O45046275(+) CTACGG/ATTCTC 2 -- ng318Minor allele frequency- A:0.16EA NA 1962
--
rs28386761,2
C,F,H,O45013714(+) GCCCTG/CCGTTC 2 -- ut31 ese38Minor allele frequency- C:0.36NA EU EA WA 545
--
rs7604311,2
A,C,F,H45014079(+) AAGCCA/CGGCGT 2 -- ut315Minor allele frequency- C:0.34MN EU EA WA 600
rs48189751,2
A,C,F,H45015684(+) AGCTGC/ATTGGC 2 -- ut31 ese38Minor allele frequency- A:0.27MN NA EU EA WA 678
rs81031,2
A,C,F,H45013658(-) ACCTAT/AGTTGT 2 -- ut3112Minor allele frequency- A:0.26NA MN EU EA 1006
About this table

HapMap Linkage Disequilibrium images for UBE2G2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 603124

1 PharmGKB disease relationship for UBE2G2 gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1FA  GN  12086872
About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/27 PubMed articles for UBE2G2 gene (see all 27 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 7327 HGNC: 12483 AceView: UBE2G2 Ensembl:ENSG00000184787 euGenes: HUgn7327
ECgene: UBE2G2 H-InvDB: UBE2G2
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for UBE2G2:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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