UBE2E2 Gene
protein-coding GIFtS: 57
GCID: GC03P023221
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ubiquitin-conjugating enzyme E2E 2(Previous names: ubiquitin-conjugating enzyme E2E 2 (homologous to yeast...)
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Aliases
for UBE2E2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Ubiquitin-Conjugating Enzyme E2E 21 2 | | Ubiquitin-Protein Ligase E22 3 | | Ubiquitin-Conjugating Enzyme E2E 2 (Homologous To Yeast UBC4/5)1 2 | | UBCH82 3 | | Ubiquitin-Conjugating Enzyme E2E 2 (UBC4/5 Homolog, Yeast)1 2 | | EC 6.3.2.193 8 | | UbcH81 3 | | FLJ251571 | | Ubiquitin Carrier Protein E22 3 | | Ubiquitin-Conjugating Enzyme E2 E22 |
Export aliases for UBE2E2 gene to outside databasesPrevious GC identifers: GC03U990078 GC03P023220 |
Summaries
for UBE2E2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: UB2E2_HUMAN, Q96LR5Function: Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitrocatalyzes 'Lys-11'- and 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination
Gene Wiki entry for UBE2E2
|
Genomic Views
for UBE2E2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_022517.18
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the UBE2E2 gene promoter:
LHX3b/Lhx3b STAT1 MEF-2A PPAR-gamma1 GATA-6 SREBP-1a FOXO4 LHX3a/Lhx3a PPAR-gamma2 aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for UBE2E2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat UBE2E2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3p24.2 Ensembl cytogenetic band: 3p24.3 HGNC cytogenetic band: 3p24.2UBE2E2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P023221: view genomic region
(about GC identifiers)
Start:
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23,244,511 bp from pter |
End:
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23,633,284 bp from pter |
Size:
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388,774 bases |
Orientation:
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plus strand |
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Proteins
for UBE2E2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: UB2E2_HUMAN, Q96LR5 (See
protein sequence)Recommended Name: Ubiquitin-conjugating enzyme E2 E2 Size: 201 amino acids; 22255 Da
1 PDB 3D structure from  and Proteopedia  for UBE2E2:1Y6L (3D)
Explore the universe of human proteins at neXtProt for UBE2E2: NX_Q96LR5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q96LR5
4/6 DME Specific Peptides for UBE2E2 (Q96LR5) (see all 6)
UBE2E2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_689866.1
ENSEMBL proteins: ENSP00000401053 ENSP00000392800 ENSP00000338340 ENSP00000379931 ENSP00000407501 Reactome Protein details: Q96LR5
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005730 | nucleolus |
-- | -- |
UBE2E2 for ontologies About GeneDecksing
UBE2E2 Antibody Products:
Assay Products for UBE2E2: |
Protein
Domains /
Families
for UBE2E2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
UBE2E2 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q96LR5ProtoNet protein and cluster: Q96LR5 1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes
UniProtKB/Swiss-Prot: UB2E2_HUMAN, Q96LR5Similarity: Belongs to the ubiquitin-conjugating enzyme family |
Function
for UBE2E2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: UB2E2_HUMAN, Q96LR5Function: Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitrocatalyzes 'Lys-11'- and 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitinationCatalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine Genatlas biochemistry entry for UBE2E2:ubiquitin conjugating enzyme E2E2,homologous to yeast UBC4/5,ubiquitously expressed, involved in selective proteindegradation
Enzyme Number (IUBMB): EC 6.3.2.191 2
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2E2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2E2 |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
UBE2E2 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for UBE2E2:
|
Pathways & Interactions
for UBE2E2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Antigen processing: Ubiquitination & Proteasome degradation | | | 2 | Immune System | | | 3 | Protein processing in endoplasmic reticulum | | | 4 | APC-Cdc20 mediated degradation of Nek2A | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 EMD Millipore Pathway for UBE2E2
5 
Reactome Pathways for UBE2E2
2 
Kegg Pathways (Kegg details for UBE2E2):
UniProtKB/Swiss-Prot: UB2E2_HUMAN, Q96LR5Pathway: Protein modification; protein ubiquitination
UBE2E2 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for UBE2E2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/86 Interacting proteins for UBE2E2 (Q96LR53 ENSP000003799314) via UniProtKB, MINT, STRING, and/or I2D (see all 86)
About this table
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table
UBE2E2 for ontologies About GeneDecksing
|
Drugs & Compounds
for UBE2E2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for UBE2E2
4 HMDB Compounds for UBE2E2 About this table
Search CenterWatch for drugs/clinical trials and news about UBE2E2 / UB2E2
|
Transcripts
for UBE2E2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for UBE2E2 gene: NM_152653.3 Unigene Cluster for UBE2E2: Ubiquitin-conjugating enzyme E2E 2 Hs.475688 [show with all ESTs]Unigene Representative Sequence: NM_1526535 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000425792 ENST00000452894 ENST00000335798 ENST00000396703(uc010hfc.2 uc003ccg.2)
ENST00000427371
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2E2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2E2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: UBE2E2 (NM_152653) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for UBE2E2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat UBE2E2 |
Additional cDNA sequence: AK057886.1 AK307075.1 BC022332.1 3 DOTS entries: DT.315038 DT.95125033 DT.100754439 24/152 AceView cDNA sequences (see all 152): BI495063 CR592620 AW675798 AW960528 F03864 BM504079 BM709539 AA296821 BM674560 AA099871 CR615770 BM716302 CB850618 BU727324 BM688855 AA766277 BI827692 CF141387 CR617055 CB306202 CA418581 Z44894 CD675501 BF002750
GeneLoc Exon Structure
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Expression
for UBE2E2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| UBE2E2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTACTGGGAA
About this image
See UBE2E2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for UBE2E2
SOURCE GeneReport for Unigene cluster: Hs.475688
SABiosciences Expression via Pathway-Focused PCR Array including UBE2E2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UBE2E2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat UBE2E2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat UBE2E2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat UBE2E2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2E2 |
Orthologs
for UBE2E2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for UBE2E2 gene from 5/21 species (see all 21) About this table
ENSEMBL Gene Tree for UBE2E2 (if available)
TreeFam Gene Tree for UBE2E2 (if available) |
Paralogs
for UBE2E2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for UBE2E2 gene
- UBE2D32 ENSG000002586772 UBE2L62 UBE2D12 UBE2D22 UBE2W2 UBE2E32 UBE2D42
- UBE2E12 UBE2L32
18/23 SIMAP similar genes for UBE2E2 using alignment to 5 protein entries: UB2E2_HUMAN (see all proteins)
(see all similar genes):UBE2E3 UBE2E1 UBE2D3 UBE2D2 UBE2D1 UBE2D4
UBE2A UBE2B UBE2N UBE2L3 UBE2H UBE2T
UBE2I UBE2M UBE2NL UBE2W UBE2G1 UBE2V2
UBE2E2 for paralogs About GeneDecksing
|
Genomic Variants
for UBE2E2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for UBE2E2 (23244511 - 23494511 bp, first 250kb of UBE2E2)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for UBE2E2
3 CNVs: 91231 6166 63419
1 Indel: 79709 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing UBE2E2 |
|
Disorders
/ Diseases
for UBE2E2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
UBE2E2 for disorders About GeneDecksing
OMIM gene information: 602163
OMIM disorders: --
3  diseases for UBE2E2: About MalaCardsmuscular atrophy parkinson's disease leukemia
1 Novoseek disease relationship for UBE2E2 gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| parkinson disease |
10.8 |
1 |
12730996 (1) |
Human Genome Epidemiology (HuGE) Navigator: UBE2E2 (3 documents)
Export disorders for UBE2E2 gene to outside databases
|
Publications
for UBE2E2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for UBE2E2 gene, integrated from 9 sources (see all 64):
(articles sorted by number of sources associating them with UBE2E2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- cDNA cloning, characterization, and chromosome mapping of UBE2E2 encoding a human ubiquitin-conjugating E2 enzyme. (PubMed id 9371400)1, 2, 3, 9 Kimura M.... Okano Y. (1997)
- Different roles for two ubiquitin-like domains of ISG15 in protein modification. (PubMed id 18356159)1, 9 Chang Y.G....Hu H.Y. (2008)
- The Spen homolog Msx2-interacting nuclear target protein interacts with the E2 ubiquitin-conjugating enzyme UbcH8. (PubMed id 16583136)1, 9 Li J....Han H. (2006)
- Link between the Ubiquitin Conjugation System and the ISG15 Conjugation System: ISG15 Conjugation to the UbcH6 Ubiquitin E2 Enzyme. (PubMed id 16428300)1, 9 Takeuchi T....Yokosawa H. (2005)
- Identification and characterization of a novel endoge nous murine parkin mutation. (PubMed id 20089136)1, 9 Ramsey C.P. and Giasson B.I. (2010)
- E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages. (PubMed id 17873885)1, 9 Christensen D.E....Klevit R.E. (2007)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Differential regulation of RNF8-mediated Lys48- and L ys63-based poly-ubiquitylation. (PubMed id 21911360)1 Lok G.T....Huen M.S. (2012)
- E1-E2 interactions in ubiquitin and Nedd8 ligation pat hways. (PubMed id 22069333)1 Tokgoz Z....Haas A.L. (2012)
- Functional interactions between ubiquitin E2 enzymes a nd TRIM proteins. (PubMed id 21143188)1 Napolitano L.M....Meroni G. (2011)
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External Searches for UBE2E2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing UBE2E2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing UBE2E2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBE2E2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for UBE2E2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for UBE2E2 gene:
Search GeneIP for patents involving UBE2E2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for UBE2E2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | Browse OriGene shRNA RFPs | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for UBE2E2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for UBE2E2 | | | OriGene Protein Over-expression Lysate for UBE2E2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for UBE2E2 | | OriGene 3'-UTR Clone for UBE2E2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2E2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for UBE2E2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for UBE2E2 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for UBE2E2 |
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