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Aliases & Descriptions for UBE2E1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.3.2.19 3 UBCH6 2 , 3 UbcH6 1 , 3
Descriptions Ubiquitin carrier protein E1 2 , 3 Ubiquitin-protein ligase E1 2 , 3 ubiquitin-conjugating enzyme E2E 1 2 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 2 ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC4/5) 1 , 2
Search outside databases for aliases for UBE2E1 genePrevious GC identifers: GC03M023441 GC03P023529 GC03P023697
Summaries for UBE2E1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2E1 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugatingenzyme family. Two alternatively spliced transcript variants encoding distinct isoforms have beenfound for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: UB2E1_HUMAN, P51965 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins
Gene Wiki entry for UBE2E1
Genomic Location for UBE2E1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2E1 gene Entrez Gene cytogenetic band: 3p24.2 Ensembl cytogenetic band: 3p24.2 HGNC cytogenetic band: 3p24.2 UBE2E1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P023822:
(about GC identifiers )
Start:
23,822,443 bp from pter
End:
23,907,811 bp from pter
Size:
85,369 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for UBE2E1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2E1_HUMAN, P51965 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 E1 Size : 193 amino acids; 21404 Da
Subunit : Interacts with RNF14
PDB structure from and Proteopedia : 1XR9 (3D)
 3BZH (3D)
 
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003332.1 NP_872607.1 ENSEMBL proteins: ENSP00000303709 ENSP00000329113 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBE2E1: Assays for UBE2E1:
Protein
Domains/ Families for UBE2E1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P51965 ProtoNet protein and cluster: P51965
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2E1_HUMAN, P51965 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2E1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182666 Applied Biosystems Silencer ® siRNAs for UBE2E1 Sigma-Aldrich siRNA and siRNA Panels for UBE2E1 Sigma-Aldrich shRNA Panels and shRNA for UBE2E1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003341                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003341                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003341  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003341 UniProtKB/Swiss-Prot: UB2E1_HUMAN, P51965 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
1 MGI phenotypic allele for Ube2e1 (no phenotypes)4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for UBE2E1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2E1 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UB2E1_HUMAN, P51965 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2E1 5/96 Interacting proteins for UBE2E1 (P51965 1 , 2 ENSP00000303709 3 ) via UniProtKB, MINT, and/or STRING (see all 96
)Interactant Interaction Details GeneCard External ID(s) ENSG00000183574 Q99942 1 , 2 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 ENSG00000206254 Q99942 1 , 2 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 RNF5 Q99942 1 , 2 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 RNF5 Q99942 1 , 2 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 EBI-348546, EBI-348482 MINT-62577 MINT-62675 MINT-62751 UBC ENSP00000344818 3 STRING (score=.986 )
About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for UBE2E1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Transcripts for UBE2E1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
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non coding RNAs according to
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182666 Sigma-Aldrich siRNA and siRNA Panels for UBE2E1 Sigma-Aldrich shRNA Panels and shRNA for UBE2E1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003341 NM_182666
REFSEQ mRNAs for UBE2E1 gene (2 alternative transcripts): NM_003341.3 NM_182666.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003341 NM_182666
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003341                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003341                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003341  
Additional cDNA sequence: AK295354.1 AK314854.1 BC009139.1 CR605474.1 CR609756.1 CR622042.1 CR624061.1 X92963.1
11 DOTS entries : DT.318024 DT.95277632 DT.97765958 DT.91742794 DT.91742798 DT.95277631 DT.95303824 DT.120907446 DT.120907453 DT.100796684 DT.75180231
24/231 AceView cDNA sequences (see all 231
):BQ924649 BQ015123 CD364807 N31627 R70937 AI784674 W25345 W80524 AA356669 CD675918 AI022520 BM762205 CD106559 BU632355 N22211 CR624061 AW439873 CB131622 AI973239 BM090873 NM_003341 BU738239 AA889986 AA173713
highest scoring ESTs for UBE2E1 :AA027117 AA056543 AA056646 AA129173 AA173547 AA173713 AA321836 AA356669 AA576323 AA889986
Unigene Cluster for UBE2E1: Ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) Hs.164853 [show with all ESTs ] Unigene Representative Sequence: NM_003341 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2E1 (see all 9
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e SP1 :   -   -     -     -   -     -             SP2 :     -     -     -   -     -             SP3 :         -     -   -     -             SP4 :         -     -       -             SP5 :   -   -   -   -     -   -     -            
About this scheme ECgene alternative splicing isoforms for UBE2E1 2 Ensembl transcripts including schematic representations : ENST00000306627
ENST00000346855
Expression for UBE2E1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2E1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2E1 1 / 2 / 3
3 probe-sets matching UBE2E1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACAGAATGGCSOURCE GeneReport for Unigene cluster: Hs.164853 Expression variation in blood from EXPOLDB for UBE2E1
Orthologs for UBE2E1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for UBE2E1 gene from 5/15 species (see all 15
)
About this table Species with no ortholog for UBE2E1 ENSEMBL Gene Tree for UBE2E1 Paralogs for UBE2E1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2E1 gene UBE2E3 2 UBE2E2 2
SNPs/Variants for UBE2E1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2E1 (up to first 250kb)
Disorders & Mutations for UBE2E1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
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OMIM: 602916
Medical News for UBE2E1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2E1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/31 PubMed articles for UBE2E1 gene (see all 31
): Cloning of human ubiquitin-conjugating enzymes UbcH6 and UbcH7 (E2- F1) and characterization of their interaction with E6-AP and RSP5. (PubMed id 8576257) 2, 3, 4 Nuber U.... Scheffner M. (1996) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) N-terminally extended human ubiquitin-conjugating enzymes (E2s) mediate the ubiquitination of RING-finger proteins, ARA54 and RNF8. (PubMed id 11322894) 1, 3 Ito K.... Okano Y. (2001) Proteome analysis reveals ubiquitin-conjugating enzymes to be a new family of interferon-alpha-regulated genes. (PubMed id 10866800) 1, 3 Nyman T.A....Kalkkinen N. (2000) Human ubiquitin-protein ligase Nedd4: expression, subcellular localization and selective interaction with ubiquitin-conjugating enzymes. (PubMed id 9990509) 1, 3 Anan T....Nakao M. (1998) The ubiquitin-conjugating enzyme UbcH6 regulates the transcriptional repression activity of the SCA1 gene product ataxin-1. (PubMed id 18519031) 3 Lee S....Kang S. (2008) Ziram causes dopaminergic cell damage by inhibiting E1 ligase of the proteasome. (PubMed id 18818210) 3 Chou A.P....Bronstein J.M. (2008) The autoantigen Ro52 is an E3 ligase resident in the cytoplasm but enters the nucleus upon cellular exposure to nitric oxide. (PubMed id 18845142) 3 Espinosa A....Wahren-Herlenius M. (2008) UbcH6 interacts with and ubiquitinates the SCA1 gene product ataxin-1. (PubMed id 18439907) 3 Hong S....Kang S. (2008) The yeast Slx5-Slx8 DNA integrity complex displays ubiquitin ligase activity. (PubMed id 18032921) 3 Ii T....Brill S.J. (2007)
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Genome Databases showing UBE2E1
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and/or
H-InvDB )
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Specialized Databases showing UBE2E1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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