Aliases for UBE2D3 Gene
Aliases for UBE2D3 Gene
- Ubiquitin Conjugating Enzyme E2 D3 2 3 5
- Ubiquitin-Conjugating Enzyme E2D 3 (Homologous To Yeast UBC4/5) 2 3
- Ubiquitin-Conjugating Enzyme E2D 3 (UBC4/5 Homolog, Yeast) 2 3
- (E3-Independent) E2 Ubiquitin-Conjugating Enzyme D3 3 4
- Ubiquitin-Conjugating Enzyme E2-17 KDa 3 3 4
- Ubiquitin-Conjugating Enzyme E2(17)KB 3 3 4
- E2 Ubiquitin-Conjugating Enzyme D3 3 4
- Ubiquitin Carrier Protein D3 3 4
- Ubiquitin-Protein Ligase D3 3 4
- UBCH5C 3 4
External Ids for UBE2D3 Gene
- HGNC: 12476
- Entrez Gene: 7323
- Ensembl: ENSG00000109332
- OMIM: 602963
- UniProtKB: P61077
Previous GeneCards Identifiers for UBE2D3 Gene
- GC04M104116
- GC04M104026
- GC04M104175
- GC04M104074
- GC04M103936
- GC04M103717
- GC04M099453
Summaries for UBE2D3 Gene
-
The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. This enzyme functions in the ubiquitination of the tumor-suppressor protein p53, which is induced by an E3 ubiquitin-protein ligase. [provided by RefSeq, Jan 2017]
GeneCards Summary for UBE2D3 Gene
UBE2D3 (Ubiquitin Conjugating Enzyme E2 D3) is a Protein Coding gene. Diseases associated with UBE2D3 include Retinitis Pigmentosa 42. Among its related pathways are Transcriptional activity of SMAD2/SMAD3-SMAD4 heterotrimer and CDK-mediated phosphorylation and removal of Cdc6. GO annotations related to this gene include ligase activity and acid-amino acid ligase activity. An important paralog of this gene is UBE2D2.
UniProtKB/Swiss-Prot for UBE2D3 Gene
-
Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes Lys-11-, as well as Lys-48-linked polyubiquitination. Cooperates with the E2 CDC34 and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Acts as an initiator E2, priming the phosphorylated NFKBIA target at positions Lys-21 and/or Lys-22 with a monoubiquitin. Ubiquitin chain elongation is then performed by CDC34, building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. Acts also as an initiator E2, in conjunction with RNF8, for the priming of PCNA. Monoubiquitination of PCNA, and its subsequent polyubiquitination, are essential events in the operation of the DNA damage tolerance (DDT) pathway that is activated after DNA damage caused by UV or chemical agents during S-phase. Associates with the BRCA1/BARD1 E3 ligase complex to perform ubiquitination at DNA damage sites following ionizing radiation leading to DNA repair. Targets DAPK3 for ubiquitination which influences promyelocytic leukemia protein nuclear body (PML-NB) formation in the nucleus. In conjunction with the MDM2 and TOPORS E3 ligases, functions ubiquitination of p53/TP53. Supports NRDP1-mediated ubiquitination and degradation of ERBB3 and of BRUCE which triggers apoptosis. In conjunction with the CBL E3 ligase, targets EGFR for polyubiquitination at the plasma membrane as well as during its internalization and transport on endosomes. In conjunction with the STUB1 E3 quality control E3 ligase, ubiquitinates unfolded proteins to catalyze their immediate destruction.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBE2D3 Gene
Genomics for UBE2D3 Gene
Regulatory Elements for UBE2D3 Gene
Enhancers for UBE2D3 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around UBE2D3 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the UBE2D3 gene promoter:
Regulatory Element Products
Genomic Location for UBE2D3 Gene
- Chromosome:
- 4
- Start:
- 102,794,383 bp from pter
- End:
- 102,868,896 bp from pter
- Size:
- 74,514 bases
- Orientation:
- Minus strand
Genomic View for UBE2D3 Gene
Genes around UBE2D3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q24 by Ensembl
- 4q24 by Entrez Gene
- 4q24 by HGNC
UBE2D3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for UBE2D3 Gene
Proteins for UBE2D3 Gene
-
Protein details for UBE2D3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P61077-UB2D3_HUMAN
- Recommended name:
- Ubiquitin-conjugating enzyme E2 D3
- Protein Accession:
- P61077
- A6NJ93
- A6NJB1
- A6NM99
- P47986
- Q6IB88
- Q6NXS4
- Q8N924
Protein attributes for UBE2D3 Gene
- Size:
- 147 amino acids
- Molecular mass:
- 16687 Da
- Quaternary structure:
-
- Interacts with SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex; when Cullin is neddylated, the interaction between the E2 and the SCF complex is strengthened. Interacts with DAPK3. Interacts with BRCA1; the DNA damage checkpoint promotes the association with BRCA1 after ionizing radiation. Interacts non-covalently with ubiquitin. Interacts with E3 ubiquitin-protein ligase CBLC.
Three dimensional structures from OCA and Proteopedia for UBE2D3 Gene
Protein Expression for UBE2D3 Gene
Selected DME Specific Peptides for UBE2D3 Gene
- P61077:
-
- CSAGPVG
- DPNPDDPLVP
- NSNGSICLDIL
- YPFKPPK
- PLVPEIA
- YQGGVFFLT
- HPNINSNG
- IYKTDRDKYNR
- QWSPALT
- SLLCDPNP
- WQATIMGP
Post-translational modifications for UBE2D3 Gene
- Phosphorylated by AURKB.
- Ubiquitination at Lys8 and isoforms=3144
- Modification sites at PhosphoSitePlus
Other Protein References for UBE2D3 Gene
- ENSEMBL proteins:
-
- ENSP00000318494
- ENSP00000337208
- ENSP00000337262
- ENSP00000344069
- ENSP00000345285
- ENSP00000378280
- ENSP00000378282
- ENSP00000378283
- ENSP00000396901
- ENSP00000421310
- ENSP00000421794
- ENSP00000421904
- ENSP00000422134
- ENSP00000422939
- ENSP00000423324
- ENSP00000423487
- ENSP00000423692
- ENSP00000423869
- ENSP00000424359
- ENSP00000424710
- ENSP00000425762
- ENSP00000426586
- ENSP00000426620
- ENSP00000427270
- ENSP00000481600
- ENSP00000349722
- REFSEQ proteins:
Antibody Products
- Cell Signaling Technology (CST) Antibodies for UBE2D3 (UBE2D3)
-
Custom Antibody ServicesOriGene Antibodies for UBE2D3
- Novus Biologicals Antibodies for UBE2D3
- Invitrogen Antibodies for UBE2D3
- antibodies-online Antibodies for UBE2D3: See all 39
- GeneTex UBE2D3 antibody for UBE2D3
-
Santa Cruz Biotechnology (SCBT) Antibodies for UBE2D3
Protein Products
- R&D Systems Proteins and Enzymes for UBE2D3 (UbcH5c/UBE2D3)
- Search Origene for MassSpec and Protein Over-expression Lysates for UBE2D3
- Origene Custom Protein Services for UBE2D3
- ProSpec Recombinant Proteins for UBE2D3
- antibodies-online Proteins for UBE2D3: See all 27
- Search antibodies-online for peptides
- Search GeneTex for Proteins for UBE2D3
-
ProSci Proteins for UBE2D3
Domains & Families for UBE2D3 Gene
Gene Families for UBE2D3 Gene
Protein Domains for UBE2D3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for UBE2D3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P61077- Family:
-
- Belongs to the ubiquitin-conjugating enzyme family.
Function for UBE2D3 Gene
Molecular function for UBE2D3 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine + [E2 ubiquitin-conjugating enzyme]-L-cysteine = [E1 ubiquitin-activating enzyme]-L-cysteine + S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine.
- UniProtKB/Swiss-Prot CatalyticActivity:
- S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E1 ubiquitin-activating enzyme]-L-cysteine + N(6)-monoubiquitinyl-[acceptor protein]-L-lysine.
- UniProtKB/Swiss-Prot Function:
- Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes Lys-11-, as well as Lys-48-linked polyubiquitination. Cooperates with the E2 CDC34 and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Acts as an initiator E2, priming the phosphorylated NFKBIA target at positions Lys-21 and/or Lys-22 with a monoubiquitin. Ubiquitin chain elongation is then performed by CDC34, building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. Acts also as an initiator E2, in conjunction with RNF8, for the priming of PCNA. Monoubiquitination of PCNA, and its subsequent polyubiquitination, are essential events in the operation of the DNA damage tolerance (DDT) pathway that is activated after DNA damage caused by UV or chemical agents during S-phase. Associates with the BRCA1/BARD1 E3 ligase complex to perform ubiquitination at DNA damage sites following ionizing radiation leading to DNA repair. Targets DAPK3 for ubiquitination which influences promyelocytic leukemia protein nuclear body (PML-NB) formation in the nucleus. In conjunction with the MDM2 and TOPORS E3 ligases, functions ubiquitination of p53/TP53. Supports NRDP1-mediated ubiquitination and degradation of ERBB3 and of BRUCE which triggers apoptosis. In conjunction with the CBL E3 ligase, targets EGFR for polyubiquitination at the plasma membrane as well as during its internalization and transport on endosomes. In conjunction with the STUB1 E3 quality control E3 ligase, ubiquitinates unfolded proteins to catalyze their immediate destruction.
Enzyme Numbers (IUBMB) for UBE2D3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000166 | nucleotide binding | IEA | -- |
| GO:0004842 | ubiquitin-protein transferase activity | TAS | -- |
| GO:0005515 | protein binding | IPI | 14667819 |
| GO:0005524 | ATP binding | IEA | -- |
| GO:0016740 | transferase activity | IEA | -- |
Phenotypes for UBE2D3 Gene
- MGI mutant phenotypes for UBE2D3:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for UBE2D3:
-
- Increased vaccinia virus (VACV) infection
- Mildly decreased CFP-tsO45G cell surface transport
- Decreased NF-kappaB reporter expression
- Resistant to vaccinia virus (VACV-A4L) infection
- Increased shRNA abundance (Z-score > 2)
- Decreased shRNA abundance (Z-score < -2)
- Strongly decreased CFP-tsO45G cell surface transport
- Decreased IL-8 secretion
- Synthetic lethal with MLN4924 (a NAE inhibitor)
- Decreased interferon-beta reporter expression
Animal Models for UBE2D3 Gene
- MGI Knock Outs for UBE2D3:
-
- Ube2d3 tm1b(EUCOMM)Hmgu
Animal Model Products
-
Taconic Biosciences Mouse Models for UBE2D3
- Cyagen custom Knockout/knockin (KOKI) mouse models for UBE2D3
-
-
ViGene Biosciences lentiviral particle packaged cDNA for UBE2D3 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for UBE2D3 gene
- Search ViGene Biosciences for UBE2D3
CRISPR Products
-
OriGene CRISPR knockouts for UBE2D3
-
Applied Biological Materials CRISPR for UBE2D3
-
Santa Cruz Biotechnology (SCBT) CRISPR for UBE2D3
- GenScript: Design CRISPR guide RNA sequences for UBE2D3
miRNA for UBE2D3 Gene
- miRTarBase miRNAs that target UBE2D3
-
- hsa-mir-155-5p (MIRT020637)
- hsa-mir-101-3p (MIRT027292)
- hsa-mir-98-5p (MIRT027590)
- hsa-let-7b-5p (MIRT032304)
- hsa-mir-877-3p (MIRT037185)
- hsa-mir-423-5p (MIRT038113)
- hsa-mir-218-5p (MIRT439364)
- hsa-mir-136-5p (MIRT439365)
- hsa-mir-6126 (MIRT444540)
- hsa-mir-6864-5p (MIRT444541)
- hsa-mir-920 (MIRT444542)
- hsa-mir-6726-5p (MIRT444543)
- hsa-mir-5591-5p (MIRT444544)
- hsa-mir-4300 (MIRT444545)
- hsa-mir-3934-3p (MIRT444546)
- hsa-mir-3670 (MIRT444547)
- hsa-mir-539-5p (MIRT444548)
- hsa-mir-493-3p (MIRT444549)
- hsa-mir-4635 (MIRT444550)
- hsa-mir-3664-3p (MIRT444551)
- hsa-mir-4433a-3p (MIRT444552)
- hsa-mir-4459 (MIRT444553)
- hsa-mir-4768-3p (MIRT444554)
- hsa-mir-4453 (MIRT444555)
- hsa-mir-4538 (MIRT444556)
- hsa-mir-6854-5p (MIRT444557)
- hsa-mir-5003-3p (MIRT444558)
- hsa-mir-6833-5p (MIRT505229)
- hsa-mir-7847-3p (MIRT505230)
- hsa-mir-3190-3p (MIRT505231)
- hsa-mir-6894-5p (MIRT505232)
- hsa-mir-765 (MIRT505233)
- hsa-mir-7154-3p (MIRT505234)
- hsa-mir-766-5p (MIRT505235)
- hsa-mir-1468-3p (MIRT505236)
- hsa-mir-548x-5p (MIRT505237)
- hsa-mir-548g-5p (MIRT505238)
- hsa-mir-548f-5p (MIRT505239)
- hsa-mir-548aj-5p (MIRT505240)
- hsa-mir-4795-5p (MIRT505241)
- hsa-mir-4657 (MIRT505242)
- hsa-mir-4491 (MIRT505243)
- hsa-mir-4519 (MIRT505244)
- hsa-mir-301b-3p (MIRT505245)
- hsa-mir-130b-3p (MIRT505246)
- hsa-mir-301a-3p (MIRT505247)
- hsa-mir-3666 (MIRT505248)
- hsa-mir-4295 (MIRT505249)
- hsa-mir-454-3p (MIRT505250)
- hsa-mir-130a-3p (MIRT505251)
- hsa-mir-19b-3p (MIRT505252)
- hsa-mir-19a-3p (MIRT505253)
- hsa-mir-152-3p (MIRT505254)
- hsa-mir-148b-3p (MIRT505255)
- hsa-mir-148a-3p (MIRT505256)
- hsa-mir-188-3p (MIRT510573)
- hsa-mir-195-3p (MIRT510574)
- hsa-mir-4733-5p (MIRT510575)
- hsa-mir-16-2-3p (MIRT510576)
- hsa-mir-577 (MIRT510577)
- hsa-mir-888-5p (MIRT510578)
- hsa-mir-376c-3p (MIRT510579)
- hsa-mir-421 (MIRT520368)
- hsa-mir-7159-5p (MIRT520369)
- hsa-mir-676-5p (MIRT520370)
- hsa-mir-505-3p (MIRT520371)
- hsa-mir-6864-3p (MIRT697866)
- hsa-mir-3672 (MIRT697867)
- hsa-mir-769-5p (MIRT697868)
- hsa-mir-4786-5p (MIRT697869)
- hsa-mir-664a-5p (MIRT697870)
- hsa-mir-4794 (MIRT697871)
- hsa-mir-7162-3p (MIRT697872)
- hsa-mir-544b (MIRT697873)
- hsa-mir-6849-3p (MIRT697874)
- hsa-mir-6771-3p (MIRT697875)
miRNA Products
- Search ViGene Biosciences for UBE2D3
Inhibitory RNA Products
- Origene siRNA, RNAi, and shRNA products in human, mouse, rat for UBE2D3
- Browse OriGene Inhibitory RNA Products For UBE2D3
-
ViGene Biosciences ready-to-package AAV shRNAs for UBE2D3 gene
Clone Products
-
OriGene ORF clones in human for UBE2D3
- RG218977
- RC218977L2
- RC218977L1
- RC218977
- RG219091
- RC219091L2
- RC219091L1
- RC219091
- RG222643
- RC222643L2
- RC222643L1
- RC222643
- RG216319
- RC216319L2
- RC216319L1
- RC216319
- RG213686
- RC213686L2
- RC213686L1
- RC213686
- RG222586
- RC222586L2
- RC222586L1
- RC222586
- RG215841
- RC215841L2
- RC215841L1
- RC215841
- RG213585
- RC213585L2
- RC213585L1
- RC213585
- RG207371
- RC207371L2
- RC207371L1
- RC207371
- RC235753
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for UBE2D3
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for UBE2D3
- VectorBuilder custom plasmid, inducible vectors for UBE2D3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for UBE2D3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for UBE2D3
-
ViGene Biosciences adenoviral particle packaged cDNA for UBE2D3 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for UBE2D3 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for UBE2D3 gene
No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for UBE2D3 Gene
Localization for UBE2D3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for UBE2D3 Gene
- Cell membrane; Peripheral membrane protein. Endosome membrane; Peripheral membrane protein.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 5 |
| cytosol | 4 |
| plasma membrane | 3 |
| endosome | 3 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005768 | endosome | IEA | -- |
| GO:0005829 | cytosol | TAS | -- |
| GO:0005886 | plasma membrane | IEA | -- |
| GO:0010008 | endosome membrane | IEA | -- |
Pathways & Interactions for UBE2D3 Gene
Pathways by source for UBE2D3 Gene
5 BioSystems pathways for UBE2D3 Gene
29 Reactome pathways for UBE2D3 Gene
2 KEGG pathways for UBE2D3 Gene
2 R&D Systems pathways for UBE2D3 Gene
2 Qiagen pathways for UBE2D3 Gene
UniProtKB/Swiss-Prot P61077-UB2D3_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for UBE2D3 Gene
Selected Interacting proteins:
ENSP00000349722
P61077-UB2D3_HUMAN
for UBE2D3 Gene via
STRING
MINT
UniProtKB
IID
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | TAS | -- |
| GO:0000209 | protein polyubiquitination | IDA | 14765125 |
| GO:0006281 | DNA repair | IEA | -- |
| GO:0006464 | cellular protein modification process | TAS | 8090726 |
| GO:0006511 | ubiquitin-dependent protein catabolic process | TAS | 8530467 |
No data available for SIGNOR curated interactions for UBE2D3 Gene
Drugs & Compounds for UBE2D3 Gene
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| pyrophosphate |
|
14000-31-8 |
|
(1) ApexBio Compounds for UBE2D3 Gene
| Compound | Action | Cas Number |
|---|---|---|
| NSC697923 | Inhibitor of E2 complex Ubc13-Uev1A,cell permeable and selective | 343351-67-7 |
Transcripts for UBE2D3 Gene
mRNA/cDNA for UBE2D3 Gene
- (11) REFSEQ mRNAs :
- (11) Additional mRNA sequences :
- (782) Selected AceView cDNA sequences:
- (33) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for UBE2D3 Gene
CRISPR Products
-
OriGene CRISPR knockouts for UBE2D3
-
Applied Biological Materials CRISPR for UBE2D3
-
Santa Cruz Biotechnology (SCBT) CRISPR for UBE2D3
- GenScript: Design CRISPR guide RNA sequences for UBE2D3
miRNA Products
- Search ViGene Biosciences for UBE2D3
Inhibitory RNA Products
- Origene siRNA, RNAi, and shRNA products in human, mouse, rat for UBE2D3
- Browse OriGene Inhibitory RNA Products For UBE2D3
-
ViGene Biosciences ready-to-package AAV shRNAs for UBE2D3 gene
Clone Products
-
OriGene ORF clones in human for UBE2D3
- RG218977
- RC218977L2
- RC218977L1
- RC218977
- RG219091
- RC219091L2
- RC219091L1
- RC219091
- RG222643
- RC222643L2
- RC222643L1
- RC222643
- RG216319
- RC216319L2
- RC216319L1
- RC216319
- RG213686
- RC213686L2
- RC213686L1
- RC213686
- RG222586
- RC222586L2
- RC222586L1
- RC222586
- RG215841
- RC215841L2
- RC215841L1
- RC215841
- RG213585
- RC213585L2
- RC213585L1
- RC213585
- RG207371
- RC207371L2
- RC207371L1
- RC207371
- RC235753
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for UBE2D3
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for UBE2D3
- VectorBuilder custom plasmid, inducible vectors for UBE2D3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for UBE2D3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | · | 3c | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d | · | 5e | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | - | |||||||||||||||||||||||||||||
| SP2: | - | - | - | - | |||||||||||||||||||||||||||||||
| SP3: | - | - | |||||||||||||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | ||||||||||||||||||||||||||||||
| SP7: | |||||||||||||||||||||||||||||||||||
| SP8: | - | ||||||||||||||||||||||||||||||||||
| SP9: | - | - |
Expression for UBE2D3 Gene
This gene is overexpressed in Rectum (14.8).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UBE2D3 Gene
NURSA nuclear receptor signaling pathways regulating expression of UBE2D3 Gene:
UBE2D3SOURCE GeneReport for Unigene cluster for UBE2D3 Gene:
Hs.518773Evidence on tissue expression from TISSUES for UBE2D3 Gene
- Nervous system(5)
- Intestine(3.8)
- Kidney(3.8)
- Lung(3.8)
- Liver(3.4)
- Skin(3.3)
- Blood(3.1)
- Eye(2.7)
- Pancreas(2.5)
- Heart(2.4)
- Spleen(2.4)
- Muscle(2.2)
Primer Products
-
OriGene qPCR primer pairs for UBE2D3
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBE2D3 Gene
Orthologs for UBE2D3 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | UBE2D3 34 35 35 |
|
||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| mouse (Mus musculus) |
Mammalia | Ube2d3 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Ube2d3 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | UBE2D3 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | UBE2D3 34 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | UBE2D3 35 |
|
OneToOne | |
| chimpanzee (Pan troglodytes) |
Mammalia | UBE2D3 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | UBE2D3 34 35 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | Str.15169 34 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.20094 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | ube2d2l 35 |
|
OneToMany | |
| ube2d3 34 |
|
||||
| wufj13d01 34 |
|
||||
| fruit fly (Drosophila melanogaster) |
Insecta | eff 36 35 |
|
||
| CG2574 36 |
|
|
|||
| CG10862 36 |
|
|
|||
| worm (Caenorhabditis elegans) |
Secernentea | let-70 36 35 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | UBC5 37 |
|
|
|
| soybean (Glycine max) |
eudicotyledons | Gma.13248 34 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os02g0120600 34 |
|
||
| Os.11479 34 |
|
||||
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.10809 35 |
|
OneToMany | |
| sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.1816 34 |
|
- Species where no ortholog for UBE2D3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for UBE2D3 Gene
Paralogs for UBE2D3 Gene
(31) SIMAP similar genes for UBE2D3 Gene using alignment to 11 proteins:
Pseudogenes.org Pseudogenes for UBE2D3 Gene
Variants for UBE2D3 Gene
| SNP ID | Clin | Chr 04 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs145312923 | Uncertain significance | 102,869,096(+) | CTGGA(A/G)AGCGT | upstream-variant-2KB, reference, synonymous-codon | |
| rs1000025929 | -- | 102,829,277(+) | AGTGC(-/TTA)TTACC | intron-variant, upstream-variant-2KB | |
| rs1000049983 | -- | 102,851,579(+) | CTGTT(C/G)TGGCA | intron-variant | |
| rs1000101061 | -- | 102,869,232(+) | TCGCC(A/T)AGCGG | intron-variant, upstream-variant-2KB | |
| rs1000107627 | -- | 102,820,225(+) | TACTA(C/T)AAAGT | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv9182n54 | CNV | loss | 21841781 |
| dgv9183n54 | CNV | loss | 21841781 |
| dgv9184n54 | CNV | loss | 21841781 |
| dgv9185n54 | CNV | loss | 21841781 |
| dgv9186n54 | CNV | loss | 21841781 |
| dgv965e199 | CNV | deletion | 23128226 |
| esv23610 | CNV | loss | 19812545 |
| esv2672686 | CNV | deletion | 23128226 |
| esv2675680 | CNV | deletion | 23128226 |
| esv2728080 | CNV | deletion | 23290073 |
| esv2759270 | CNV | gain | 17122850 |
| esv3564363 | CNV | deletion | 23714750 |
| esv3564364 | CNV | deletion | 23714750 |
| esv3564365 | CNV | deletion | 23714750 |
| esv3569635 | CNV | loss | 25503493 |
| esv3601621 | CNV | loss | 21293372 |
| esv3601622 | CNV | loss | 21293372 |
| nsv10541 | CNV | loss | 18304495 |
| nsv473003 | CNV | novel sequence insertion | 20440878 |
| nsv526256 | CNV | loss | 19592680 |
| nsv594957 | CNV | loss | 21841781 |
| nsv980236 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
52.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.15;
3.36% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for UBE2D3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- UBE2D3
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UBE2D3 Gene
Disorders for UBE2D3 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| retinitis pigmentosa 42 |
|
|
Search UBE2D3 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for UBE2D3
No data available for UniProtKB/Swiss-Prot and Genatlas for UBE2D3 Gene
Publications for UBE2D3 Gene
- Topors functions as an E3 ubiquitin ligase with specific E2 enzymes and ubiquitinates p53. (PMID: 15247280) Rajendra R. … Rubin E.H. (J. Biol. Chem. 2004) 3 4 22 64
- Identification of a family of closely related human ubiquitin conjugating enzymes. (PMID: 8530467) Jensen J.P. … Weissman A.M. (J. Biol. Chem. 1995) 2 3 4 64
- UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids. (PMID: 21532592) Wenzel D.M. … Klevit R.E. (Nature 2011) 3 4 64
- The E2 ubiquitin-conjugating enzymes direct polyubiquitination to preferred lysines. (PMID: 20061386) David Y. … Navon A. (J. Biol. Chem. 2010) 3 4 64
- A systematic gene-based screen of chr4q22-q32 identifies association of a novel susceptibility gene, DKK2, with the quantitative trait of alcohol dependence symptom counts. (PMID: 20332099) Kalsi G. … Riley B.P. (Hum. Mol. Genet. 2010) 3 46 64
Products for UBE2D3 Gene
- Browse R&D Systems for Antibodies
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- Custom Antibody ServicesOriGene Antibodies for UBE2D3
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- OriGene qPCR primer pairs for UBE2D3
- OriGene CRISPR knockouts for UBE2D3
- OriGene ORF clones in human for UBE2D3
- RC235753
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- GenScript: Next-day shipping of latest version cDNA ORF clones for UBE2D3 in any vector
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- Cell Signaling Technology (CST) Antibodies for UBE2D3 (UBE2D3)
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- Browse Sino Biological Cell Lysates
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- Novus Biologicals Antibodies for UBE2D3
- Novus Biologicals proteins and lysates for UBE2D3
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- ProSpec Recombinant Proteins for UBE2D3
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Taconic Biosciences Mouse Models for UBE2D3
- Find your next knockout model in the Taconic Knockout Repository
- Genetically Engineered Models Available Immediately
- Humanized Mice
- Invitrogen Antibodies for UBE2D3
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- ApexBio compounds for UBE2D3
- Addgene plasmids for UBE2D3
- antibodies-online Antibodies for UBE2D3: See all 39
- Search antibodies-online for kits
- antibodies-online Proteins for UBE2D3: See all 27
- Search antibodies-online for peptides
- GeneTex UBE2D3 antibody for UBE2D3
- Search GeneTex for Proteins for UBE2D3
- ViGene Biosciences adenoviral particle packaged cDNA for UBE2D3 gene
- ViGene Biosciences lentiviral particle packaged cDNA for UBE2D3 gene
- ViGene Biosciences ready-to-package AAV shRNAs for UBE2D3 gene
- Search ViGene Biosciences for UBE2D3
- Santa Cruz Biotechnology (SCBT) Antibodies for UBE2D3
- Search Santa Cruz Biotechnology (SCBT) for UBE2D3 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for UBE2D3
- Search for UBE2D3 Antibodies at ProSci
- Custom Antibody Services
- ProSci Proteins for UBE2D3
- Horizon Cell Lines for UBE2D3
- Cyagen custom Knockout/knockin (KOKI) mouse models for UBE2D3
- VectorBuilder custom plasmid, inducible vectors for UBE2D3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for UBE2D3
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for UBE2D3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus Biologicals
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer
- (156) abm
- (157) CrownBio