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Aliases & Descriptions for UBE2D3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E2(17)KB3 2 EC 6.3.2.19 3 MGC43926 2 MGC5416 2 OTTHUMP00000161758 2 OTTHUMP00000161759 2 UBC4/5 2 UBCH5C 2 , 3 UbcH5C 1
Descriptions E2(17)KB 3 3 Ubiquitin carrier protein D3 3 Ubiquitin-conjugating enzyme E2-17 kDa 3 2 , 3 Ubiquitin-protein ligase D3 3 ubiquitin carrier protein 2 ubiquitin-conjugating enzyme E2D 3 2 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2 ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5) 1 , 2
Search outside databases for aliases for UBE2D3 genePrevious GC identifers: GC04M104116 GC04M104026 GC04M104175 GC04M104074
Summaries for UBE2D3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2D3 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugatingenzyme family. This enzyme functions in the ubiquitination of the tumor-suppressor protein p53,which is induced by an E3 ubiquitin-protein ligase. Multiple spliced transcript variants have beenfound for this gene, but the full-length nature of some variants has not been determined.[provided by RefSeq] UniProtKB/Swiss-Prot: UB2D3_HUMAN, P61077 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53
Gene Wiki entry for UBE2D3
Genomic Location for UBE2D3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2D3 gene Entrez Gene cytogenetic band: 4q24 Ensembl cytogenetic band: 4q24 HGNC cytogenetic band: 4q24 UBE2D3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M103936:
(about GC identifiers )
Start:
103,936,217 bp from pter
End:
104,009,473 bp from pter
Size:
73,257 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000004.10 NT_016354.18 Proteins for UBE2D3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2D3_HUMAN, P61077 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 D3 Size : 147 amino acids; 16687 Da
PDB structure from and Proteopedia : 1X23 (3D)
 2FUH (3D)
 
Secondary accessions : A6NM99 P47986 Q6IB88 Q6NXS4
REFSEQ proteins (9 alternative transcripts):
NP_003331.1 NP_871615.1 NP_871616.1 NP_871617.1 NP_871618.1 NP_871619.1 NP_871620.1 NP_871621.1 NP_871622.1 ENSEMBL proteins: ENSP00000337262 ENSP00000378282 ENSP00000318494 ENSP00000378283 ENSP00000337208 ENSP00000378280 ENSP00000344069 ENSP00000349722 ENSP00000378277 ENSP00000345285 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): UBE2D3 Antibodies for UBE2D3: Assays for UBE2D3:
Protein
Domains/ Families for UBE2D3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P61077 ProtoNet protein and cluster: P61077
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2D3_HUMAN, P61077 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2D3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 9 ): NM_181889 Applied Biosystems Silencer ® siRNAs for UBE2D3 Sigma-Aldrich siRNA and siRNA Panels for UBE2D3 Sigma-Aldrich shRNA Panels and shRNA for UBE2D3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 9 ): NM_003340                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 9 ): NM_003340                                  untagged cDNA clones in CMV expression vector (see all 10 ): AK095822  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_181893 UniProtKB/Swiss-Prot: UB2D3_HUMAN, P61077 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53 Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for UBE2D3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2D3 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UB2D3_HUMAN, P61077 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2D3 4 Interacting proteins for UBE2D3 (ENSP00000344069 3 P61077 1 , 2 ) via UniProtKB, MINT, and/or STRING Interactant Interaction Details GeneCard External ID(s) ENSG00000183574 Q99942 1 , 2 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 ENSG00000206254 Q99942 1 , 2 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 RNF5 Q99942 1 , 2 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 RNF5 Q99942 1 , 2 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 EBI-348268, EBI-348482 MINT-62678 MINT-62754 MINT-62580 -- ensp: ENSP00000318494 3 STRING (score= )
About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for UBE2D3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Transcripts for UBE2D3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 9 ): NM_181889 Sigma-Aldrich siRNA and siRNA Panels for UBE2D3 Sigma-Aldrich shRNA Panels and shRNA for UBE2D3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003340 NM_181886 NM_181887 NM_181888 NM_181889 NM_181890 NM_181891 NM_181892 NM_181893
REFSEQ mRNAs for UBE2D3 gene (9 alternative transcripts): NM_003340.4 NM_181886.1 NM_181887.1 NM_181888.1 NM_181889.1 NM_181890.1 NM_181891.1 NM_181892.1 NM_181893.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003340 NM_181886 NM_181887 NM_181888 NM_181889 NM_181890 NM_181891 NM_181892 NM_181893
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 9 ): NM_003340                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 9 ): NM_003340                                  untagged cDNA clones in CMV expression vector (see all 10 ): AK095822  
Additional cDNA sequence: AK095822.1 AK124159.1 AK127304.1 AK315775.1 AL050186.1 AL833414.1 BC003395.1 BC037894.2 BC066917.1 CR456916.1 CR596812.1 CR604221.1 CR608063.1 CR610934.1 CR619029.1 CR620503.1 CR625720.1 U39318.1
24/69 DOTS entries (see all 69
): DT.100684091 DT.100805383 DT.101969497 DT.101985597 DT.454162 DT.95273708 DT.97780980 DT.100684103 DT.101985592 DT.97862577 DT.100039445 DT.100684107 DT.121253183 DT.95092051 DT.91788058 DT.100684106 DT.91700781 DT.100684101 DT.121253022 DT.121253182 DT.121253306 DT.100684097 DT.95273714 DT.95273713
24/782 AceView cDNA sequences (see all 782
):BU186980 CB162571 BU193254 BU677041 W46934 CR619029 CR618043 AA164993 NM_181888 AI923982 BM541512 AW874003 AL535270 CA427172 AL050186 BX427697 AW196905 CR604221 BQ007163 CA444507 BF432055 F11733 BU192219 CB409969
highest scoring ESTs for UBE2D3 :AW020027 U39318 AV754305 BF215733 BF666811 BG613555 BM465843 BU570661 CD642889 AA017200
Unigene Cluster for UBE2D3: Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) Hs.518773 [show with all ESTs ] Unigene Representative Sequence: AK127304 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2D3 (see all 9
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c · 5d · 5e ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 SP1 :       -   -   -   -   -   -                     SP2 :           -   -   -   -                     SP3 :               -   -                     SP4 :                                     SP5 :     -   -   -   -   -   -   -                    
About this scheme ECgene alternative splicing isoforms for UBE2D3 10 Ensembl transcripts including schematic representations : ENST00000350435
ENST00000394803
ENST00000321805
ENST00000394804
ENST00000338145
ENST00000394801
ENST00000349311
ENST00000357194
ENST00000394798
ENST00000343106
Expression for UBE2D3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2D3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2D3 1 / 2 / 3
13 probe-sets matching UBE2D3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AATGAATAAASOURCE GeneReport for Unigene cluster: Hs.518773 Expression variation in blood from EXPOLDB for UBE2D3
Orthologs for UBE2D3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBE2D3 gene from 5/16 species (see all 16
)
About this table Species with no ortholog for UBE2D3 ENSEMBL Gene Tree for UBE2D3 Paralogs for UBE2D3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2D3 gene UBE2D1 2 UBE2D4 2 UBE2D2 2
SNPs/Variants for UBE2D3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2D3 (up to first 250kb)
Disorders & Mutations for UBE2D3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602963
Medical News for UBE2D3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2D3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/28 PubMed articles for UBE2D3 gene (see all 28
):
Search for UBE2D3
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UBE2D3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBE2D3
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--
Specialized Databases showing UBE2D3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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