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Aliases & Descriptions for UBE2D2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E2(17)KB2 2 EC 6.3.2.19 3 PUBC1 2 UBC4 1 , 2 , 3 UBC4/5 2 UBCH5B 2 , 3 UbcH5B 1
Descriptions E2(17)KB 2 3 Ubiquitin carrier protein D2 3 Ubiquitin-conjugating enzyme E2-17 kDa 2 2 , 3 Ubiquitin-protein ligase D2 3 ubiquitin carrier protein 2 ubiquitin-conjugating enzyme E2 D2 2 ubiquitin-conjugating enzyme E2D 2 2 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) 2 ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC4/5) 1 , 2
Search outside databases for aliases for UBE2D2 genePrevious GC identifers: GC05P138764 GC05P139524 GC05P138923 GC05P138969
Summaries for UBE2D2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2D2 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugatingenzyme family. This enzyme functions in the ubiquitination of the tumor-suppressor protein p53,which is induced by an E3 ubiquitin-protein ligase. Two alternatively spliced transcript variantshave been found for this gene and they encode distinct isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53
Gene Wiki entry for UBE2D2
Genomic Location for UBE2D2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2D2 gene Entrez Gene cytogenetic band: 5q31.2 Ensembl cytogenetic band: 5q31.2 HGNC cytogenetic band: 5q31.3 UBE2D2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P138920:
(about GC identifiers )
Start:
138,920,935 bp from pter
End:
138,988,203 bp from pter
Size:
67,269 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_029289.10 Proteins for UBE2D2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 D2 Size : 147 amino acids; 16735 Da
Subunit : Interacts with SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex and with E3ubiquitin-protein ligase PJA2 (By similarity)
PDB structures from and Proteopedia : 1UR6 (3D)
 1W4U (3D)
 2C4O (3D)
 2CLW (3D)
 2ESK (3D)
 2ESO (3D)
 2ESP (3D)
 2ESQ (3D)
 
Secondary accessions : P51669 Q3MN78
REFSEQ proteins (2 alternative transcripts):
NP_003330.1 NP_862821.1 ENSEMBL proteins: ENSP00000381718 ENSP00000381717 ENSP00000253815 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): UBE2D2 Antibodies for UBE2D2: Assays for UBE2D2:
Protein
Domains/ Families for UBE2D2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P62837 ProtoNet protein and cluster: P62837
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2D2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_181838 Applied Biosystems Silencer ® siRNAs for UBE2D2 Sigma-Aldrich siRNA and siRNA Panels for UBE2D2 Sigma-Aldrich shRNA Panels and shRNA for UBE2D2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003339                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003339                                  untagged cDNA clones in CMV expression vector (see all 3 ): AK001428  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003339 UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53 Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ube2d2) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for UBE2D2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2D2 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2D2 5/47 Interacting proteins for UBE2D2 (ENSP00000253815 3 P62837 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 47
)Interactant Interaction Details GeneCard External ID(s) ENSG00000183574 Q99942 1 , 2 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 ENSG00000206254 Q99942 1 , 2 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 RNF5 Q99942 1 , 2 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 RNF5 Q99942 1 , 2 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 RNF11 Q9Y3C5 2 MINT-60866
About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for UBE2D2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Transcripts for UBE2D2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_181838 Sigma-Aldrich siRNA and siRNA Panels for UBE2D2 Sigma-Aldrich shRNA Panels and shRNA for UBE2D2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003339 NM_181838
REFSEQ mRNAs for UBE2D2 gene (2 alternative transcripts): NM_003339.2 NM_181838.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003339 NM_181838
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003339                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003339                                  untagged cDNA clones in CMV expression vector (see all 3 ): AK001428  
Additional cDNA sequence: AF317220.1 AK001311.1 AK001428.1 AK310273.1 AY651263.1 BC019052.2 BC033349.1 BC048426.1 CR591688.1 CR592107.1 CR594111.1 CR596483.1 CR606151.1 CR607642.1 CR611730.1 CR618308.1 CR622545.1 CR623635.1 U39317.1
15 DOTS entries : DT.100800484 DT.319277 DT.100828335 DT.100828340 DT.100731149 DT.100037876 DT.100828338 DT.120836914 DT.40123145 DT.100668950 DT.100828341 DT.120836919 DT.91867306 DT.95221810 DT.97859662
24/423 AceView cDNA sequences (see all 423
):BU542791 BM770383 CA427384 AW168331 BM791339 AI372006 BU609158 AI933490 CB853137 AA297216 AI955197 AI559459 BU733337 BE886869 BM930740 CB177912 BX443090 CR607642 BQ639894 BM685264 BF037887 BQ940385 AI587443 CB529566
highest scoring ESTs for UBE2D2 :AI432424 U39317 AA010414 AA011242 AA039754 AA058377 AA128361 AA128524 AA128739 AA128740
Unigene Cluster for UBE2D2: Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Hs.108332 [show with all ESTs ] Unigene Representative Sequence: NM_181838 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000398734
ENST00000398733
ENST00000253815
Expression for UBE2D2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2D2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2D2 1 / 2 / 3
9 probe-sets matching UBE2D2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAGCTGTGTCSOURCE GeneReport for Unigene cluster: Hs.108332 Expression variation in blood from EXPOLDB for UBE2D2
Orthologs for UBE2D2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for UBE2D2 gene from 5/22 species (see all 22
)
About this table Species with no ortholog for UBE2D2 ENSEMBL Gene Tree for UBE2D2 Paralogs for UBE2D2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2D2 gene UBE2D3P 2 UBE2D1 2 UBE2D4 2
SNPs/Variants for UBE2D2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2D2 (up to first 250kb)
Disorders & Mutations for UBE2D2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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OMIM: 602962 1 PharmGKB disease relationship for UBE2D2 gene About this table Human Genome Epidemiology Navigator: UBE2D2 (1 document)
Medical News for UBE2D2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2D2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/44 PubMed articles for UBE2D2 gene (see all 44
): Identification of a family of closely related human ubiquitin conjugating enzymes. (PubMed id 8530467) 2, 3, 4 Jensen J.P....Weissman A.M. (1995) Humoral detection of leukaemia-associated antigens in presentation acute myeloid leukaemia. (PubMed id 16112646) 3, 4 Guinn B.-A.... Mufti G.J. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) SCF(beta-TRCP) and phosphorylation dependent ubiquitination of I kappa B alpha catalyzed by Ubc3 and Ubc4. (PubMed id 10918611) 3, 4 Strack P.... Rolfe M. (2000) Reconstitution of p53-ubiquitinylation reactions from purified components: the role of human ubiquitin-conjugating enzyme UBC4 and E6-associated protein (E6AP). (PubMed id 7724550) 3, 4 Rolfe M.... Draetta G. (1995) Human ubiquitin-protein ligase Nedd4: expression, subcellular localization and selective interaction with ubiquitin-conjugating enzymes. (PubMed id 9990509) 1, 3 Anan T....Nakao M. (1998) E2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity. (PubMed id 18996392) 1, 3 Huang A....Boelens R. (2009) Subcellular localization and ubiquitin-conjugating enzyme (E2) interactions of mammalian HECT family ubiquitin protein ligases. (PubMed id 9182527) 1, 3 Hatakeyama S....Weissman A.M. (1997) Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PubMed id 19240791) 3 Graubert T.A....Walter M.J. (2009)
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Specialized Databases showing UBE2D2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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