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UBE2D2 Gene

protein-coding   GIFtS: 63

GC05P138920
ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)
(Previous name: ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC4/5) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
E2(17)KB2 2
EC 6.3.2.19 3
PUBC1 2
UBC4 1, 2, 3
UBC4/5 2
UBCH5B 2, 3
UbcH5B 1
Descriptions
E2(17)KB 2 3
Ubiquitin carrier protein D2 3
Ubiquitin-conjugating enzyme E2-17 kDa 2 2, 3
Ubiquitin-protein ligase D2 3
ubiquitin carrier protein 2
ubiquitin-conjugating enzyme E2 D2 2
ubiquitin-conjugating enzyme E2D 2 2
ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) 2
ubiquitin-conjugating enzyme E2D 2 (homologous to yeast
UBC4/5) 1, 2
External Ids
HGNC: 124751
Entrez Gene: 73222
UniProtKB: P628373
Ensembl: ENSG000001315087
Search outside databases for aliases for UBE2D2 gene

Previous GC identifers: GC05P138764 GC05P139524 GC05P138923 GC05P138969

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for UBE2D2:
The modification of proteins with ubiquitin is an important cellular mechanism for targeting
abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes
of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and
ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating
enzyme family. This enzyme functions in the ubiquitination of the tumor-suppressor protein p53,
which is induced by an E3 ubiquitin-protein ligase. Two alternatively spliced transcript variants
have been found for this gene and they encode distinct isoforms. [provided by RefSeq]

UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective
degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination
of p53/TP53

Gene Wiki entry for UBE2D2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the UBE2D2 gene  

Entrez Gene cytogenetic band: 5q31.2   Ensembl cytogenetic band:  5q31.2   HGNC cytogenetic band: 5q31.3

UBE2D2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P138920:     (about GC identifiers)

Start:
138,920,935 bp from pter
End:
138,988,203 bp from pter
Size:
67,269 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000005.8  NT_029289.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837 (See protein sequence)
Recommended Name: Ubiquitin-conjugating enzyme E2 D2  
Size: 147 amino acids; 16735 Da
Subunit: Interacts with SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex and with E3
ubiquitin-protein ligase PJA2 (By similarity)
PDB structures from and Proteopedia :
1UR6 (3D)    1W4U (3D)    2C4O (3D)    2CLW (3D)    2ESK (3D)    2ESO (3D)    2ESP (3D)    2ESQ (3D)    
Secondary accessions: P51669 Q3MN78

REFSEQ proteins (2 alternative transcripts): 
NP_003330.1  NP_862821.1  


ENSEMBL proteins: 
ENSP00000381718 ENSP00000381717 ENSP00000253815 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant UBE2D2 Protein
Sigma-Aldrich Proteins for UBE2D2  
Browse R&D Systems for human recombinant proteins
Enzo Life Sciences proteins for UBE2D2
Recombinant Proteins from Abcam (UBE2D2)
Human Recombinant Proteins from Abnova (UBE2D2)
               OriGene Purified Recombinant Human Proteins (see all 2): UBE2D2  


Antibodies for UBE2D2: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of UBE2D2
Sigma-Aldrich Antibodies for UBE2D2
Browse R&D Systems for Antibodies
Antibodies from Abcam (UBE2D2), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (UBE2D2)
Novus Biologicals Antibodies for UBE2D2

Assays for UBE2D2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Enzo Life Sciences assays for UBE2D2

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

2 InterPro domains/families:
 IPR000608 UBQ-conjugat_E2
 IPR016135 UBQ-conjugat/RWD-like


   GeneDecks  UBE2D2 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P62837

ProtoNet protein and cluster: P62837

1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes

UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837
Similarity: Belongs to the ubiquitin-conjugating enzyme family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2D2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2D2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_181838

              Applied Biosystems Silencer® siRNAs for UBE2D2

              Sigma-Aldrich siRNA and siRNA Panels for UBE2D2  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2D2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003339
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003339
                                 untagged cDNA clones in CMV expression vector (see all 3): AK001428 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_003339

UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective
degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination
of p53/TP53
Catalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein
N-ubiquityllysine
Enzyme Number (IUBMB): EC 6.3.2.19 

1 MGI mutant phenotype (inferred from 1 allele(MGI details for Ube2d2):

reproductive system

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004842 ubiquitin-protein ligase activity TAS8090726
GO:0005515 protein binding IPI12878161 14667819
GO:0016874 ligase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for UBE2D2
 Common schema of ubiquitination

   GeneDecks  UBE2D2 for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  UBE2D2  (Your Favorite Gene powered by Ingenuity) 
 Protein Ubiquitination Pathway
 Hypoxia Signaling in the Cardiovascular System

   GeneDecks  UBE2D2 for the pathways selected above  
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1 Kegg Pathway  (Kegg details for UBE2D2):
 hsa04120 Ubiquitin mediated proteolysis

   GeneDecks  UBE2D2 for the pathways selected above  
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UniProtKB/Swiss-Prot: UB2D2_HUMAN, P62837
Pathway: Protein modification; protein ubiquitination

 Gene Network CentralTM Interacting Genes and Proteins Network for  UBE2D2 


5/47 Interacting proteins for UBE2D2 (ENSP000002538153 P628371, 2) via UniProtKB, MINT, and/or STRING (see all 47 )

InteractantInteraction Details
GeneCardExternal ID(s)
ENSG00000183574Q999421, 2EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579
ENSG00000206254Q999421, 2EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579
RNF5Q999421, 2EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579
RNF5Q999421, 2EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579 EBI-347677, EBI-348482 MINT-62677 MINT-62753 MINT-62579
RNF11Q9Y3C52MINT-60866
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3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process TAS7724550
GO:0016567 protein ubiquitination IDA9990509
GO:0051246 regulation of protein metabolic process IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for UBE2D2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2D2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2D2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_181838

              Sigma-Aldrich siRNA and siRNA Panels for UBE2D2  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2D2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_003339  NM_181838  

REFSEQ mRNAs for UBE2D2 gene (2 alternative transcripts): 

NM_003339.2   NM_181838.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_003339  NM_181838  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003339
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003339
                                 untagged cDNA clones in CMV expression vector (see all 3): AK001428 

Additional cDNA sequence: 

AF317220.1 AK001311.1 AK001428.1 AK310273.1 AY651263.1 BC019052.2 BC033349.1 BC048426.1 
CR591688.1 CR592107.1 CR594111.1 CR596483.1 CR606151.1 CR607642.1 CR611730.1 CR618308.1 
CR622545.1 CR623635.1 U39317.1 

15 DOTS entries:

DT.100800484  DT.319277  DT.100828335  DT.100828340  DT.100731149  DT.100037876  DT.100828338  DT.120836914 
DT.40123145  DT.100668950  DT.100828341  DT.120836919  DT.91867306  DT.95221810  DT.97859662 

24/423 AceView cDNA sequences (see all 423 ):

BU542791 BM770383 CA427384 AW168331 BM791339 AI372006 BU609158 AI933490 
CB853137 AA297216 AI955197 AI559459 BU733337 BE886869 BM930740 CB177912 
BX443090 CR607642 BQ639894 BM685264 BF037887 BQ940385 AI587443 CB529566 

highest scoring ESTs for UBE2D2:

AI432424 U39317 AA010414 AA011242 AA039754 AA058377 AA128361 AA128524 AA128739 AA128740 

Unigene Cluster for UBE2D2:

Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)
Hs.108332  [show with all ESTs]
Unigene Representative Sequence: NM_181838


GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations:
ENST00000398734  ENST00000398733  ENST00000253815  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

UBE2D2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for UBE2D2

1 / 2 / 3

9 probe-sets matching UBE2D2 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
50909_at2, 3 U95-B 1 1.00 1.00 0.78 0.78 AI432424 1.00 1.00 1.00 1

832_at2, 3 U95-A 1 1.00 1.00 0.59 1.09 U39317 1.00 1.00 1.00 1

38705_at2, 3 U95-A 1 1.00 1.00 0.95 1.14 AI310002 0.80 1.00 0.91 1

201345_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_003339 0.60 1.00 0.82 1

201344_at2, 3 U133-A 1 1.00 1.00 -- -- BF196642 0.80 1.00 0.91 1

201343_at2, 3 U133-A 1 1.00 1.00 -- -- BE621259 0.80 1.00 0.91 1

201345_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201344_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201343_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  UBE2D2 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: AAGCTGTGTC

SOURCE GeneReport for Unigene cluster: Hs.108332

Expression variation in blood from EXPOLDB for UBE2D2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for UBE2D2 gene from 5/22 species (see all 22 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
UBE2D21   -- ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, more 97.96(n)
100(a)
612742  XM_850849.1  XP_855942.1 
chimpanzee
(Pan troglodytes)
UBE2D21   -- ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, more 99.77(n)
100(a)
462108  XM_517968.2  XP_517968.1 
cow
(Bos taurus)
UBE2D21   -- ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, more 98.64(n)
100(a)
541003  NM_001046496.1  NP_001039961.1 
rat
(Rattus norvegicus)
Ube2d21   -- ubiquitin-conjugating enzyme E2D 2 97.28(n)
100(a)
641452  NM_001037292.1  NP_001032369.1 
mouse
(Mus musculus)
Ube2d21, 5 185
ubiquitin-conjugating enzyme E2D 21, 5 97.28(n)1
100(a)1
565501  NM_019912.11  NP_064296.11 
 AK0053555  AK0758445  (see all 23)
About this table        Species with no ortholog for UBE2D2

ENSEMBL Gene Tree for UBE2D2
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for UBE2D2 gene
UBE2D3P2  UBE2D12  UBE2D42  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/269 NCBI SNPs in UBE2D2 are shown (see all 269 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 56)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 5 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs1814941,2
C,H138988548(-) gcctaG/Aaaggt 2 -- ng314Minor allele frequency- A:0.00EU EA WA 400
rs125166281,2
C,H138919751(+) ATATTC/TTAGGT 2 -- ng514Minor allele frequency- T:0.00EU EA WA 418
--
rs3564261,2
A,C138988686(-) gagccC/Taggag 2 -- ng310--------
--
rs133591501,2
H138987810(+) TTGGTA/GAGTTA 2 -- ut314Minor allele frequency- G:0.00EU EA WA 412
rs7690521,2
A,C,F,H,O138924617(+) ACAGCT/CAGTGA 2 -- int18Minor allele frequency- C:0.10MN EU EA WA NA 746
rs1651791,2
A,C,F,H,O138965878(+) GTCTCT/CGGGGA 2 -- int112Minor allele frequency- C:0.09EU EA WA 1258
rs3564281,2
C,F,H,O138972887(+) TTCCTA/GTCCTT 2 -- int18Minor allele frequency- G:0.15EU EA WA 834
rs3551481,2
C,F,H,O138955008(-) CGGAAC/TATGTG 2 -- int17Minor allele frequency- T:0.08EU EA WA NA 544
rs3564271,2
A,C,F,H138984673(-) TTTGAC/GAATAA 2 -- int14Minor allele frequency- G:0.09EU EA WA 416
rs4035831,2
A,C,F,H138960558(-) ATTTCG/ACAAGT 2 -- int18Minor allele frequency- A:0.07EU EA WA 838
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HapMap Linkage Disequilibrium images for UBE2D2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 602962

1 PharmGKB disease relationship for UBE2D2 gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1FA  GN  12086872
About this table

Human Genome Epidemiology Navigator: UBE2D2 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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10/44 PubMed articles for UBE2D2 gene (see all 44 ):
(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 7322 HGNC: 12475 AceView: UBE2D2 Ensembl:ENSG00000131508 euGenes: HUgn7322
ECgene: UBE2D2 H-InvDB: UBE2D2
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for UBE2D2 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for UBE2D2:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Tagged/untagged cDNA clones
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 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for UBE2D2




 Assays/Proteins for UBE2D2
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for UBE2D2

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