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Aliases & Descriptions for UBE2D1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E2(17)KB1 1 , 2 EC 6.3.2.19 3 OTTHUMP00000019631 2 SFT 2 , 3 UBC4/5 1 , 2 UBCH5 1 , 2 , 3 , 5 UBCH5A 2 , 3 , 5 UbcH5 3 UbcH5A 1
Descriptions E2(17)KB 1 3 Stimulator of Fe transport 1 , 2 , 3 UBC4/5 homolog 3 Ubiquitin carrier protein D1 3 Ubiquitin-conjugating enzyme E2-17 kDa 1 2 , 3 Ubiquitin-protein ligase D1 3 ubiquitin carrier protein 2 ubiquitin-conjugating enzyme E2D 1 2 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2
Search outside databases for aliases for UBE2D1 genePrevious GC identifers: GC10P058890 GC10P059120 GC10P059987 GC10P059439
Summaries for UBE2D1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2D1 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugatingenzyme family. This enzyme is closely related to a stimulator of iron transport (SFT), and isup-regulated in hereditary hemochromatosis. It also functions in the ubiquitination of thetumor-suppressor protein p53 and the hypoxia-inducible transcription factor HIF1alpha byinteracting with the E1 ubiquitin-activating enzyme and the E3 ubiquitin-protein ligases.[provided by RefSeq] UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53
Gene Wiki entry for UBE2D1
Genomic Location for UBE2D1
(According to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2D1 gene Entrez Gene cytogenetic band: 10q11.2-q21 Ensembl cytogenetic band: 10q21.1 HGNC cytogenetic band: 10q21.1 UBE2D1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P059764:
(about GC identifiers )
Start:
59,764,745 bp from pter
End:
59,800,515 bp from pter
Size:
35,771 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_008583.16 Proteins for UBE2D1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 D1 Size : 147 amino acids; 16602 Da
Subunit : Component of a E3 ubiquitin ligase complex containing UBE2D1, SIAH1, CACYBP/SIP, SKP1, APCand TBL1X
Caution : PubMed:9362508 cloned and sequenced SFT which consisted of UBE2D1 last coding exon alongwith intronic sequences on the 5'-end of this exon. A function in iron transport has beendescribed
PDB structures from and Proteopedia : 2C4P (3D)
 
REFSEQ proteins: NP_003329.1 ENSEMBL proteins: ENSP00000363019 ENSP00000185885 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2D1 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBE2D1: Assays for UBE2D1:
Protein
Domains/ Families for UBE2D1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P51668 ProtoNet protein and cluster: P51668
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2D1
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003338 Applied Biosystems Silencer ® siRNAs for UBE2D1 Sigma-Aldrich siRNA and siRNA Panels for UBE2D1 Sigma-Aldrich shRNA Panels and shRNA for UBE2D1 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003338                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003338                                  untagged cDNA clone in CMV expression vector: NM_003338  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003338 UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selectivedegradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitinationof p53/TP53 Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
Genatlas biochemistry entry for UBE2D1 :ubiquitin conjugating enzyme E2D1,homologous to yeast UBC4/5,involved in the degradation ofcellular proteins,mediating the E6-AP dependent ubiquitination of p53 2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004842 ubiquitin-protein ligase activity
IEA -- GO:0016874 ligase activity
IEA --
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Pathways & Interactions for UBE2D1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2D1 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2D1 5/114 Interacting proteins for UBE2D1 (ENSP00000185885 3 P51668 2 ) via UniProtKB, MINT, and/or STRING (see all 114
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
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Drugs & Compounds for UBE2D1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
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Browse Tocris compounds for UBE2D1 1 Novoseek chemical compound relationship for UBE2D1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
iron
9.17
12
9856986 (6), 12480712 (4)
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Transcripts for UBE2D1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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ESTs according to GeneTide ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003338 Sigma-Aldrich siRNA and siRNA Panels for UBE2D1 Sigma-Aldrich shRNA Panels and shRNA for UBE2D1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003338
REFSEQ mRNAs for UBE2D1 gene: NM_003338.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003338
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003338                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003338                                  untagged cDNA clone in CMV expression vector: NM_003338  
Additional cDNA sequence: AF257220.1 AJ272367.1 AK291901.1 BC005980.1 BC015997.1 BT007041.1 CR594114.1 CR603407.1 CR617065.1 CR619802.1 CR620939.1 X78140.1
6 DOTS entries : DT.307663 DT.91814554 DT.121230867 DT.100015092 DT.121230872 DT.91745697
24/123 AceView cDNA sequences (see all 123
):AW513111 CR617065 BM091396 NM_003338 AJ272367 CR619802 CA309945 CD367058 AA363510 BP340354 F00283 BM091092 CA312792 CD367095 AA310465 BG496394 CR603407 BM467992 BQ574761 AI341493 X78140 CR594114 BM721687 AF257220
highest scoring ESTs for UBE2D1 :AA146924 AA148102 AF257220 AI189220 AI246338 AI474628 AI566662 AI689001 AI800875 AI813597
Unigene Cluster for UBE2D1: Ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) Hs.129683 [show with all ESTs ] Unigene Representative Sequence: NM_003338 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2D1 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b SP1 :     -         -           SP2 :             -           SP3 :     -     -     -           SP4 :                      
About this scheme ECgene alternative splicing isoforms for UBE2D1 2 Ensembl transcripts including schematic representations : ENST00000373910
ENST00000185885
Expression for UBE2D1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2D1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2D1 1 / 2 / 3
6 probe-sets matching UBE2D1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TATGTCAACTSOURCE GeneReport for Unigene cluster: Hs.129683 Expression variation in blood from EXPOLDB for UBE2D1
UniProtKB/Swiss-Prot: UB2D1_HUMAN, P51668 Tissue specificity : Ubiquitous. Up-regulated in livers of iron-overloaded patients with hereditaryhemochromatosis
Orthologs for UBE2D1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
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Orthologs for UBE2D1 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for UBE2D1 ENSEMBL Gene Tree for UBE2D1 Paralogs for UBE2D1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2D1 gene UBE2D3P 2 UBE2D4 2 UBE2D2 2
SNPs/Variants for UBE2D1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2D1 (up to first 250kb)
Disorders & Mutations for UBE2D1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
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OMIM: 602961 2 Novoseek disease relationships for UBE2D1 gene
About this table Human Genome Epidemiology Navigator: UBE2D1 (1 document)
Medical News for UBE2D1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2D1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
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10/65 PubMed articles for UBE2D1 gene (see all 65
): UbcH5A, a member of human E2 ubiquitin-conjugating enzymes, is closely related to SFT, a stimulator of iron transport, and is up- regulated in hereditary hemochromatosis. (PubMed id 12480712) 1, 3, 4 Gehrke S.G.... Stremmel W. (2003) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Siah-1, SIP, and Ebi collaborate in a novel pathway for beta-catenin degradation linked to p53 responses. (PubMed id 11389839) 3, 4 Matsuzawa S. and Reed J.C. (2001) Assignment of UBE2D1 to human chromosome bands 10q11.2-->q21 by in situ hybridization. (PubMed id 10072594) 2, 3 Robinson P.A....Markham A.F. (1998) Functional expression cloning and characterization of SFT, a stimulator of Fe transport. (PubMed id 9362508) 3, 4 Gutierrez J.A....Wessling-Resnick M. (1997) Identification of a family of closely related human ubiquitin conjugating enzymes. (PubMed id 8530467) 2, 3 Jensen J.P....Weissman A.M. (1995) Identification of a human ubiquitin-conjugating enzyme that mediates the E6-AP-dependent ubiquitination of p53. (PubMed id 8090726) 3, 4 Scheffner M.... Howley P.M. (1994) The autoantigen Ro52 is an E3 ligase resident in the cytoplasm but enters the nucleus upon cellular exposure to nitric oxide. (PubMed id 18845142) 3 Espinosa A....Wahren-Herlenius M. (2008) Pex10p functions as an E3 ligase for the Ubc4p-dependent ubiquitination of Pex5p. (PubMed id 18644345) 3 Williams C....Distel B. (2008) Identification of phosphorylation sites of TOPORS and a role for serine 98 in the regulation of ubiquitin but not SUMO E3 ligase activity. (PubMed id 19053840) 3 Park H.J....Rubin E.H. (2008)
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