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UBE2C Gene

protein-coding   GIFtS: 63

GC20P043874
ubiquitin-conjugating enzyme E2C
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 6.3.2.19 3
OTTHUMP00000031653 2
OTTHUMP00000031655 2
UBCH10 1, 2, 3, 5
UbcH10 3
dJ447F3.2 2
Descriptions
Ubiquitin carrier protein C 3
Ubiquitin-protein ligase C 2, 3
cyclin-selective ubiquitin carrier protein 2
mitotic-specific ubiquitin-conjugating enzyme 2
ubiquitin carrier protein E2-C 2
ubiquitin-conjugating enzyme E2C 2
External Ids
HGNC: 159371
Entrez Gene: 110652
UniProtKB: O007623
Ensembl: ENSG000001750637
Search outside databases for aliases for UBE2C gene

Previous GC identifers: GC20P044169 GC20P045079 GC20P045126

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for UBE2C:
The modification of proteins with ubiquitin is an important cellular mechanism for targeting
abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes
of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and
ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating
enzyme family. This enzyme is required for the destruction of mitotic cyclins and for cell cycle
progression. Multiple transcript variants encoding different isoforms have been found for this
gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: UBE2C_HUMAN, O00762
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for the
destruction of mitotic cyclins

Gene Wiki entry for UBE2C

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the UBE2C gene  

Entrez Gene cytogenetic band: 20q13.12   Ensembl cytogenetic band:  20q13.12   HGNC cytogenetic band: 20q13.12

UBE2C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P043874:     (about GC identifiers)

Start:
43,874,662 bp from pter
End:
43,879,003 bp from pter
Size:
4,342 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000020.9  NT_011362.9  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UBE2C_HUMAN, O00762 (See protein sequence)
Recommended Name: Ubiquitin-conjugating enzyme E2 C  
Size: 179 amino acids; 19652 Da
PDB structures from and Proteopedia :
1I7K (3D)    

REFSEQ proteins (6 alternative transcripts): 
NP_008950.1  NP_861515.1  NP_861516.1  NP_861517.1  NP_861518.1  NP_861519.1  


ENSEMBL proteins: 
ENSP00000243893 ENSP00000335674 ENSP00000333975 ENSP00000348838 ENSP00000361649 ENSP00000361660 
ENSP00000385878 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant UBE2C Protein
Sigma-Aldrich Proteins for UBE2C  
Browse R&D Systems for human recombinant proteins
Enzo Life Sciences proteins for UBE2C
Recombinant Proteins from Abcam (UBE2C)
Human Recombinant Proteins from Abnova (UBE2C)
               OriGene Purified Recombinant Human Proteins (see all 2): UBE2C  

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005654 nucleoplasm EXP10548110 11340163 15029244
GO:0005829 cytosol EXP10793135 11285280 11535616 11742988 12070128
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Antibodies for UBE2C: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of UBE2C
Sigma-Aldrich Antibodies for UBE2C
Browse R&D Systems for Antibodies
Antibodies from Abcam (UBE2C), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (UBE2C)
Novus Biologicals Antibodies for UBE2C

Assays for UBE2C: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Enzo Life Sciences assays for UBE2C

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR015582 Ubiquitin-conj_enz_E2_H10
 IPR000608 UBQ-conjugat_E2
 IPR016135 UBQ-conjugat/RWD-like


   GeneDecks  UBE2C for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O00762

ProtoNet protein and cluster: O00762

1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes

UniProtKB/Swiss-Prot: UBE2C_HUMAN, O00762
Similarity: Belongs to the ubiquitin-conjugating enzyme family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2C)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2C)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 6): NM_181799

              Applied Biosystems Silencer® siRNAs for UBE2C

              Sigma-Aldrich siRNA and siRNA Panels for UBE2C  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2C  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for UBE2C
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 6): NM_007019
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 6): NM_007019
                                 untagged cDNA clones in CMV expression vector (see all 7): NM_007019 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_007019

UniProtKB/Swiss-Prot: UBE2C_HUMAN, O00762
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for the
destruction of mitotic cyclins
Catalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein
N-ubiquityllysine
Enzyme Number (IUBMB): EC 6.3.2.19 

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004842 ubiquitin-protein ligase activity IDA9122200
GO:0005524 ATP binding IEA--
GO:0016874 ligase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for UBE2C
 Common schema of ubiquitination

   GeneDecks  UBE2C for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  UBE2C  (Your Favorite Gene powered by Ingenuity) 
 Protein Ubiquitination Pathway
 Hypoxia Signaling in the Cardiovascular System

   GeneDecks  UBE2C for the pathways selected above  
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1 Kegg Pathway  (Kegg details for UBE2C):
 hsa04120 Ubiquitin mediated proteolysis

   GeneDecks  UBE2C for the pathways selected above  
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UniProtKB/Swiss-Prot: UBE2C_HUMAN, O00762
Pathway: Protein modification; protein ubiquitination

 Gene Network CentralTM Interacting Genes and Proteins Network for  UBE2C 


5/72 Interacting proteins for UBE2C (ENSP000003488383) via UniProtKB, MINT, and/or STRING (see all 72 )

InteractantInteraction Details
GeneCardExternal ID(s)
UBCENSP000003448183STRING (score=.981)
PTTG2ENSP000003449363STRING (score=.968)
ANAPC2ENSP000003140043STRING (score=.959)
ANAPC11ENSP000003499573STRING (score=.955)
CDC27ENSP000000665443STRING (score=.949)
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5/13 Gene Ontology (GO) biological process terms (links to tree view) (see all 13 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0006511 ubiquitin-dependent protein catabolic process IDA9122200
GO:0007049 cell cycle NAS15504738
GO:0007051 spindle organization NAS15504738
GO:0007067 mitosis IEA--
GO:0008054 cyclin catabolic process IDA9122200
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for UBE2C
2 Novoseek chemical compound relationships for UBE2C gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
lysine 21.92 1 14732013 (1)
oligonucleotide 14.41 1 17217624 (1)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (UBE2C)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (UBE2C)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 6): NM_181799

              Sigma-Aldrich siRNA and siRNA Panels for UBE2C  
                     Sigma-Aldrich shRNA Panels and shRNA for UBE2C  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_007019  NM_181799  NM_181800  NM_181801  NM_181802  NM_181803  

REFSEQ mRNAs for UBE2C gene (6 alternative transcripts): 

NM_007019.2   NM_181799.1   NM_181800.1   NM_181801.2   NM_181802.1   NM_181803.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_007019  NM_181799  NM_181800  NM_181801  NM_181802  NM_181803  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 6): NM_007019
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 6): NM_007019
                                 untagged cDNA clones in CMV expression vector (see all 7): NM_007019 

Additional cDNA sequence: 

AK311949.1 BC007656.2 BC016292.1 BC028161.1 BC032677.2 BC050736.1 BT007300.1 BT020165.1 
BT020166.1 CR456988.1 CR593952.1 CR610834.1 U73379.1 

17 DOTS entries:

DT.455083  DT.446076  DT.101984847  DT.91766689  DT.95092516  DT.101984846  DT.100822418  DT.120817240 
DT.120817711  DT.102842123  DT.102842126  DT.120817606  DT.102842114  DT.120817859  DT.95189185  DT.95245584 
DT.100038110 

24/252 AceView cDNA sequences (see all 252 ):

BM845270 BM549174 BU625723 BI870709 BU509336 BE268039 BU844974 BU727867 
AI250679 BX344527 BM698699 NM_181800 AI264541 BQ218554 BE904898 NM_007019 
BC016292 BU506804 BM755952 AA596035 BM467729 BU509084 BM781915 CR610834 

highest scoring ESTs for UBE2C:

U73379 AA136118 AA149943 AA160710 AA305922 AA382274 AA401483 AA403150 AA430504 AA554943 

Unigene Cluster for UBE2C:

Ubiquitin-conjugating enzyme E2C
Hs.93002  [show with all ESTs]
Unigene Representative Sequence: BC032677


GeneLoc Exon Structure

5/8 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2C (see all 8 )

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b
SP1:                    -     -           -                           
SP2:                    -     -                 -                     
SP3:                    -     -           -     -                     
SP4:                    -     -     -           -                     
SP5:                    -     -     -     -                           

About this scheme

ECgene alternative splicing isoforms for UBE2C

7 Ensembl transcripts including schematic representations:
ENST00000243893  ENST00000335046  ENST00000352551  ENST00000356455  ENST00000372568  ENST00000372579  
ENST00000405520  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

UBE2C expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for UBE2C

1 / 2 / 3

3 probe-sets matching UBE2C gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
1651_at2, 3 U95-A 3 1.00 0.89 1.00 1.00 U73379 1.00 1.00 1.00 1

202954_at2, 3 U133-A 3 1.00 0.94 -- -- NM_007019 0.60 1.00 0.82 1

202954_at2 U133Plus2 3 1.00 0.94 -- -- -- -- -- -- --
GeneDecks  UBE2C for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CTGCCGAGCT

SOURCE GeneReport for Unigene cluster: Hs.93002

Expression variation in blood from EXPOLDB for UBE2C

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for UBE2C gene from 5/20 species (see all 20 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
UBE2C1   -- ubiquitin-conjugating enzyme E2C 93.11(n)
97.77(a)
485898  XM_543022.2  XP_543022.2 
cow
(Bos taurus)
UBE2C1   -- ubiquitin-conjugating enzyme E2C 91.43(n)
97.21(a)
506962  NM_001037449.1  NP_001032526.1 
rat
(Rattus norvegicus)
Ube2c1   -- ubiquitin-conjugating enzyme E2C 89.76(n)
96.09(a)
296368  XM_215924.3  XP_215924.1 
mouse
(Mus musculus)
Ube2c1, 5 2 (93.00 cM)5
ubiquitin-conjugating enzyme E2C1, 5 87.52(n)1
95.53(a)1
686121  NM_026785.21  NP_081061.11 
 AK0037225  AK1361865  (see all 14)
zebrafish
(Danio rerio)
zgc:1231901   -- zgc:123190 68.64(n)
76.92(a)
566441  NM_001037691.1  NP_001032780.1 
About this table        Species with no ortholog for UBE2C

ENSEMBL Gene Tree for UBE2C
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for UBE2C gene
UBE2B2  UBE2A2  

Pseudogenes
3 related pseudogenes


(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/68 NCBI SNPs in UBE2C are shown (see all 68 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 47)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 20 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs61043551,2
A,C,F,H43879083(+) AAGCAG/ATGGGG 6 -- ng318Minor allele frequency- A:0.43EU EA WA 822
rs3686221,2
A,C,H43874097(-) acgtcT/Cgtaat 6 -- ng514Minor allele frequency- C:0.00EU EA WA 418
rs4455031,2
A,F,H43879476(-) TCCACC/AGGGGA 6 -- ng315Minor allele frequency- A:0.49EA NA EU WA 268
rs4407891,2
C,F,H43874900(+) ACCCAG/CAGCAA 6 -- int1 ng51 ut51 ese312Minor allele frequency- C:0.06MN EU EA WA NA 1082
rs61309391,2
H43879066(+) CTTAAG/AGATGT 6 -- ng314Minor allele frequency- A:0.00EU EA WA 420
--
rs60942131,2
H43874133(+) ATGTTG/TCCTTT 6 -- ng514Minor allele frequency- T:0.00EU EA WA 394
rs115376451,2
C43874810(-) CCCCCG/CCTCGG 6 R/S mis1 ng51 ut51 ese31Minor allele frequency- C:0.01NA 72
rs73521101,2
H43877755(+) ATGTCA/GGGACC 6 R/G mis1 int1 ese34Minor allele frequency- G:0.00EU EA WA 418
rs3824941,2
C,F,H43878167(-) AAATTA/GTTTAT 6 -- int15Minor allele frequency- G:0.01MN EU EA WA 604
--
rs9103961,2
A,C43877173(-) GGGCGC/TGGTGG 6 -- int10--------
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HapMap Linkage Disequilibrium images for UBE2C (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605574

3 Novoseek disease relationships for UBE2C gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
primary tumor 18.82 2 16772118 (1)
tumors 0.00 7 18331723 (1), 17354233 (1), 17217624 (1), 16772118 (1)
metastasis 0.00 1 16772118 (1)
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(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/50 PubMed articles for UBE2C gene (see all 50 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 11065 HGNC: 15937 AceView: UBE2C Ensembl:ENSG00000175063 euGenes: HUgn11065
ECgene: UBE2C H-InvDB: UBE2C
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for UBE2C Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for UBE2C:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for UBE2C Antibodies for UBE2C
 Explore super-pooled esiRNAs Proteins for UBE2C
 Lentivirus-delivered shRNAs for UBE2C Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant Proteins
(UBE2C)
 Antibodies (UBE2C)
 Tagged/untagged cDNA clones
 Validated SYBR primer pairs
 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for UBE2C




 Assays/Proteins for UBE2C
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for UBE2C

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