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Aliases & Descriptions for UBE2B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| E2-17kDa 2 | | EC 6.3.2.19 3 | | HHR6B 1, 2 | | HR6B 2, 3 | | RAD6B 2, 3, 5 | | UBC2 1, 2 | | hHR6B 3 |
| | | Descriptions |
|---|
| E2 protein 2 | | E2-17 kDa 3 | | Ubiquitin carrier protein B 2, 3 | | Ubiquitin-protein ligase B 2, 3 | | ubiquitin-conjugating enzyme E2B 2 | | ubiquitin-conjugating enzyme E2B (RAD6 homolog) 2 |
|
| | Search outside databases for aliases for UBE2B genePrevious GC identifers: GC05P133355 GC05P134221 GC05P133737 GC05P133783 |
Summaries for UBE2B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for UBE2B: The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. This enzyme is required for post-replicative DNA damage repair. Its protein sequence is 100% identical to the mouse, rat, and rabbit homologs, which indicates that this enzyme is highly conserved in eukaryotic evolution. [provided by RefSeq] UniProtKB/Swiss-Prot: UBE2B_HUMAN, P63146Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowthGene Wiki entry for UBE2B |
Genomic Location for UBE2B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the UBE2B gene 
Entrez Gene cytogenetic band: 5q23-q31 Ensembl cytogenetic band: 5q31.1 HGNC cytogenetic band: 5q31.1UBE2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P133734:
(about GC identifiers)
Start:
|
133,734,769 bp from pter |
End:
|
133,755,698 bp from pter |
Size:
|
20,930 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000005.8 NT_034772.5
| Proteins for UBE2B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: UBE2B_HUMAN, P63146 (See
protein sequence)Recommended Name: Ubiquitin-conjugating enzyme E2 B Size: 152 amino acids; 17312 Da
Subunit: Interacts with RAD18 and UBR2
Subcellular location: Cell membrane (By similarity). Nucleus (By similarity). Note=In peripheral neurons, expressed both at the plasma membrane and in nuclei (By similarity)
PDB structure from and Proteopedia :1JAS (3D)
 1NXA (3D)
 
Secondary accessions: P23567 Q4PJ15 Q9D0J6REFSEQ proteins: NP_003328.1
ENSEMBL proteins: ENSP00000265339
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBE2B 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for UBE2B: Assays for UBE2B: | Protein
Domains/ Families for UBE2B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P63146
ProtoNet protein and cluster: P63146 1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes
UniProtKB/Swiss-Prot: UBE2B_HUMAN, P63146Similarity: Belongs to the ubiquitin-conjugating enzyme family | Gene Function for UBE2B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003337
Applied Biosystems Silencer® siRNAs for UBE2B
Sigma-Aldrich siRNA and siRNA Panels for UBE2B  Sigma-Aldrich shRNA Panels and shRNA for UBE2B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003337                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003337                                  untagged cDNA clones in CMV expression vector (see all 2): BC001694 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003337
UniProtKB/Swiss-Prot: UBE2B_HUMAN, P63146Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowthCatalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysineEnzyme Number (IUBMB): EC 6.3.2.19 Genatlas biochemistry entry for UBE2B:ubiquitin conjugating enzyme E2B,involved in post replication repair,containing a CGG repeat in 5'utr4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ube2b):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004842 | ubiquitin-protein ligase activity |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- | | GO:0016874 | ligase activity |
IEA | -- | About this table | Pathways & Interactions for UBE2B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2B (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: UBE2B_HUMAN, P63146Pathway: Protein modification; protein ubiquitination Gene Network CentralTM Interacting Genes and Proteins Network for UBE2B 
5/16 Interacting proteins for UBE2B (ENSP000002653393 P631462) via UniProtKB, MINT, and/or STRING (see all 16
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for UBE2B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for UBE2B
|
Transcripts for UBE2B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003337
Sigma-Aldrich siRNA and siRNA Panels for UBE2B  Sigma-Aldrich shRNA Panels and shRNA for UBE2B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003337 REFSEQ mRNAs for UBE2B gene: NM_003337.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003337               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003337                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003337                                  untagged cDNA clones in CMV expression vector (see all 2): BC001694  Additional cDNA sequence: AK057639.1 AK312012.1 BC005979.1 BC008404.1 BC008470.1 BT007071.1 CR407634.1 CR604876.1 CR616089.1 CR625304.1 M74525.1 X53251.1 20 DOTS entries: DT.319282 DT.100808685 DT.100808677 DT.40121603 DT.92439916 DT.97846777 DT.70101729 DT.100044489 DT.92439905 DT.40133261 DT.100699719 DT.100768866 DT.100808676 DT.95104579 DT.100808679 DT.100808682 DT.40133263 DT.86852750 DT.92439919 DT.95352653 24/314 AceView cDNA sequences (see all 314
):BU687077 AA490994 BM993110 BI755252 AI434206 BQ422988 BE904209 AA552980 BM718879 CB243683 NM_003337 CF127499 BQ018092 BM976620 BU616515 CA427693 BM552908 BM680751 CA432625 AA126538 BU679339 BU686894 BQ001089 AA669428
highest scoring ESTs for UBE2B:AI985481 AW002331 M74525 AA010721 AA011168 AA018371 AA019149 AA046249 AA046368 AA053973 Unigene Clusters for UBE2B: Ubiquitin-conjugating enzyme E2B (RAD6 homolog) Hs.615284 , Hs.644421 [show with all ESTs]Unigene Representative Sequences: BC001694, NM_003337
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2B
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | · | 6d | · | 6e | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for UBE2B
1 Ensembl transcript including schematic representation: ENST00000265339
|
Expression for UBE2B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| UBE2B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for UBE2B
1 / 2 / 3 15 probe-sets matching UBE2B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAAAGCTGTT
SOURCE GeneReport for Unigene clusters: Hs.615284 Hs.644421
Expression variation in blood from EXPOLDB for UBE2B |
Orthologs for UBE2B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for UBE2B gene from 5/22 species (see all 22
)
About this table Species with no ortholog for UBE2B
ENSEMBL Gene Tree for UBE2B | Paralogs for UBE2B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for UBE2B gene
- UBE2C2 UBE2A2
|
SNPs/Variants for UBE2B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for UBE2B (up to first 250kb)
|
Disorders & Mutations for UBE2B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 179095 4 Novoseek disease relationships for UBE2B gene
About this table
Human Gene Mutation Database: UBE2B Human Genome Epidemiology Navigator: UBE2B (2 documents)
|
Medical News for UBE2B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for UBE2B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/49 PubMed articles for UBE2B gene (see all 49
):- Localization of two human homologs, HHR6A and HHR6B, of the yeast DNA repair gene RAD6 to chromosomes Xq24-q25 and 5q23-q31. (PubMed id 1559696)1, 2, 3 Koken M.H....Hoeijmakers J.H. (1992)
- The human RAD18 gene product interacts with HHR6A and HHR6B. (PubMed id 10908344)1, 3, 4 Xin H....Wang Z. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The NMR structure of the class I human ubiquitin-conjugating enzyme 2b. (PubMed id 11885984)3, 4 Miura T.... Senn H. (2002)
- Structural and functional conservation of two human homologs of the yeast DNA repair gene RAD6. (PubMed id 1717990)3, 4 Koken M.H.M.... Hoeijmakers J.H.J. (1991)
- Mammalian mRNAs encoding protein closely related to ubiquitin- conjugating enzyme encoded by yeast DNA repair gene RAD6. (PubMed id 1883845)3, 4 Woffendin C.... Plagemann P.G. (1991)
- The human ubiquitin carrier protein E2(Mr = 17,000) is homologous to the yeast DNA repair gene RAD6. (PubMed id 2158443)3, 4 Schneider R.... Schweiger M. (1990)
- Essential role of T-cell factor/beta-catenin in regulation of Rad6B: a potential mechanism for Rad6B overexpression in breast cancer cells. (PubMed id 17050667)1, 3 Shekhar M.P....Gerard B. (2006)
- RAD6B overexpression confers chemoresistance: RAD6 expression during cell cycle and its redistribution to chromatin during DNA damage-induced response. (PubMed id 14981545)1, 3 Lyakhovich A. and Shekhar M.P. (2004)
- Recognition of forked and single-stranded DNA structures by human RAD18 complexed with RAD6B protein triggers its recruitment to stalled replication forks. (PubMed id 18363965)1, 3 Tsuji Y....Tateishi S. (2008)
|
Search for UBE2B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing UBE2B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing UBE2B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBE2B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for UBE2B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for UBE2B:

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Incremental update: 13 Oct 2009
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