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Aliases & Descriptions for UBE2A
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.3.2.19 3 HHR6A 1 , 2 HR6A 3 OTTHUMP00000023901 2 RAD6A 2 , 3 , 5 UBC2 1 , 2 hHR6A 3
Descriptions Ubiquitin carrier protein A 2 , 3 Ubiquitin-protein ligase A 2 , 3 ubiquitin-conjugating enzyme E2A 2 ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2
Search outside databases for aliases for UBE2A genePrevious GC identifers: GC0XP113526 GC0XP115694 GC0XP116683 GC0XP117462 GC0XP118490
Summaries for UBE2A (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBE2A : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugatingenzyme family. This enzyme is required for post-replicative DNA damage repair. Multiplealternatively spliced transcript variants have been found for this gene and they encode distinctisoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Required forpostreplication repair of UV-damaged DNA
Gene Wiki entry for UBE2A
Genomic Location for UBE2A
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBE2A gene Entrez Gene cytogenetic band: Xq24-q25 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq24 UBE2A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP118592:
(about GC identifiers )
Start:
118,592,527 bp from pter
End:
118,602,409 bp from pter
Size:
9,883 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000023.9 NT_011786.15 Proteins for UBE2A
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 (See
protein sequence )Recommended Name: Ubiquitin-conjugating enzyme E2 A Size : 152 amino acids; 17315 Da
Subunit : Interacts with RAD18
Secondary accessions : A6NMF5 B2R7R9 Q4TTG1 Q96FX4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_003327.2 NP_861427.1 NP_861442.1 ENSEMBL proteins: ENSP00000360624 ENSP00000384285 ENSP00000360613 ENSP00000335027 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): UBE2A Antibodies for UBE2A: Assays for UBE2A:
Protein
Domains/ Families for UBE2A(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P49459 ProtoNet protein and cluster: P49459
1 Blocks protein family : IPB000608 Ubiquitin-conjugating enzymes UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 Similarity : Belongs to the ubiquitin-conjugating enzyme family
Gene Function for UBE2A
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003336 Applied Biosystems Silencer ® siRNAs for UBE2A Sigma-Aldrich siRNA and siRNA Panels for UBE2A Sigma-Aldrich shRNA Panels and shRNA for UBE2A Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003336                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003336                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003336  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003336 UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 Function : Catalyzes the covalent attachment of ubiquitin to other proteins. Required forpostreplication repair of UV-damaged DNA Catalytic activity : ATP + ubiquitin + protein lysine = AMP + diphosphate + proteinN-ubiquityllysine Enzyme Number (IUBMB): EC 6.3.2.19
Genatlas biochemistry entry for UBE2A :ubiquitin conjugating enzyme E2A,involved in post replication repair
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ube2a) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004842 ubiquitin-protein ligase activity
IEA -- GO:0016874 ligase activity
IEA --
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Pathways & Interactions for UBE2A
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for UBE2A (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for UBE2A 5/21 Interacting proteins for UBE2A (ENSP00000360624 3 ) via UniProtKB, MINT, and/or STRING (see all 21
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for UBE2A (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for UBE2A
Transcripts for UBE2A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003336 Sigma-Aldrich siRNA and siRNA Panels for UBE2A Sigma-Aldrich shRNA Panels and shRNA for UBE2A Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003336 NM_181762 NM_181777
REFSEQ mRNAs for UBE2A gene (3 alternative transcripts): NM_003336.2 NM_181762.1 NM_181777.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003336 NM_181762 NM_181777
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003336                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003336                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003336  
Additional cDNA sequence: AK223045.1 AK223064.1 AK297696.1 AK301675.1 AK313092.1 BC010175.2 BC042021.1 CR592668.1 CR595604.1 CR598158.1 CR598456.1 CR600075.1 CR603049.1 CR608682.1 CR614387.1 CR614696.1 CR616784.1 CR618296.1 CR621348.1 CR622728.1 D28459.1 M74524.1
20 DOTS entries : DT.452059 DT.92407072 DT.91959936 DT.100795889 DT.40121076 DT.75112169 DT.121299908 DT.121299914 DT.91789984 DT.95324926 DT.100795884 DT.100795886 DT.100795888 DT.121299884 DT.121299910 DT.91813739 DT.97824937 DT.100758018 DT.91999652 DT.97791444
24/408 AceView cDNA sequences (see all 408
):CA424516 AI300485 BE349961 AA594270 AA825629 CB127128 D20353 BM671147 AW205767 AI609766 CR608682 BQ717080 AA747564 CR600075 CR616784 AA804394 CR618296 BQ006384 BM127839 CR592668 CR614696 BM128046 BQ576081 AI087376
highest scoring ESTs for UBE2A :M74524 AA000982 AA015815 AA029245 AA032037 AA034264 AA043941 AA044203 AA045750 AA045751
Unigene Cluster for UBE2A: Ubiquitin-conjugating enzyme E2A (RAD6 homolog) Hs.379466 [show with all ESTs ] Unigene Representative Sequence: BC042021 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2A (see all 7
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d SP1 :                 -   -     -               SP2 :         -         -   -     -               SP3 :                 -       -               SP4 :                 -   -   -   -               SP5 :             -   -   -   -     -              
About this scheme ECgene alternative splicing isoforms for UBE2A 4 Ensembl transcripts including schematic representations : ENST00000371569
ENST00000404672
ENST00000371558
ENST00000346330
Expression for UBE2A
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBE2A expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBE2A 1 / 2 / 3
5 probe-sets matching UBE2A gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CGGGACTTCASOURCE GeneReport for Unigene cluster: Hs.379466 Expression variation in blood from EXPOLDB for UBE2A
Orthologs for UBE2A
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBE2A gene from 5/17 species (see all 17
)
About this table Species with no ortholog for UBE2A ENSEMBL Gene Tree for UBE2A Paralogs for UBE2A (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBE2A gene UBE2B 2 UBE2C 2
SNPs/Variants for UBE2A (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBE2A (up to first 250kb)
Disorders & Mutations for UBE2A
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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OMIM: 312180 1 PharmGKB disease relationship for UBE2A gene
About this table Human Gene Mutation Database : UBE2A
Medical News for UBE2A (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBE2A (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/23 PubMed articles for UBE2A gene (see all 23
): Localization of two human homologs, HHR6A and HHR6B, of the yeast DNA repair gene RAD6 to chromosomes Xq24-q25 and 5q23-q31. (PubMed id 1559696) 1, 2, 3 Koken M.H....Hoeijmakers J.H. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Structural and functional conservation of two human homologs of the yeast DNA repair gene RAD6. (PubMed id 1717990) 3, 4 Koken M.H.M.... Hoeijmakers J.H.J. (1991) Regulation of the ubiquitin-conjugating enzyme hHR6A by CDK-mediated phosphorylation. (PubMed id 11953320) 1, 3 Sarcevic B....Sutherland R.L. (2002) The human RAD18 gene product interacts with HHR6A and HHR6B. (PubMed id 10908344) 1, 3 Xin H....Wang Z. (2000) UBE2A, which encodes a ubiquitin-conjugating enzyme, is mutated in a novel X-linked mental retardation syndrome. (PubMed id 16909393) 3 Nascimento R.M....Vianna-Morgante A.M. (2006) The DNA sequence of the human X chromosome. (PubMed id 15772651) 4 Ross M.T.... Bentley D.R. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 4 Ota T....Sugano S. (2004) Supramolecular complex formation between Rad6 and proteins of the p53 pathway during DNA damage-induced response. (PubMed id 12640129) 3 Lyakhovich A. and Shekhar M.P. (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12730115) 7 Ross M.E....Downing J.R. (2003)
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Genome Databases showing UBE2A
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBE2A
(According to HUGE )
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Specialized Databases showing UBE2A (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UBE2A (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for UBE2A:
Recombinant Proteins (Rad6 ) Antibodies (Rad6 )
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