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UBE2A Gene

protein-coding   GIFtS: 68

GC0XP118592
ubiquitin-conjugating enzyme E2A (RAD6 homolog)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 6.3.2.19 3
HHR6A 1, 2
HR6A 3
OTTHUMP00000023901 2
RAD6A 2, 3, 5
UBC2 1, 2
hHR6A 3
Descriptions
Ubiquitin carrier protein A 2, 3
Ubiquitin-protein ligase A 2, 3
ubiquitin-conjugating enzyme E2A 2
ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2
External Ids
HGNC: 124721
Entrez Gene: 73192
UniProtKB: P494593
Ensembl: ENSG000000777217
Search outside databases for aliases for UBE2A gene

Previous GC identifers: GC0XP113526 GC0XP115694 GC0XP116683 GC0XP117462 GC0XP118490

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for UBE2A:
The modification of proteins with ubiquitin is an important cellular mechanism for targeting
abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes
of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and
ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating
enzyme family. This enzyme is required for post-replicative DNA damage repair. Multiple
alternatively spliced transcript variants have been found for this gene and they encode distinct
isoforms. [provided by RefSeq]

UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459
Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for
postreplication repair of UV-damaged DNA

Gene Wiki entry for UBE2A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the UBE2A gene  

Entrez Gene cytogenetic band: Xq24-q25   Ensembl cytogenetic band:  Xq24   HGNC cytogenetic band: Xq24

UBE2A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP118592:     (about GC identifiers)

Start:
118,592,527 bp from pter
End:
118,602,409 bp from pter
Size:
9,883 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000023.9  NT_011786.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459 (See protein sequence)
Recommended Name: Ubiquitin-conjugating enzyme E2 A  
Size: 152 amino acids; 17315 Da
Subunit: Interacts with RAD18
Secondary accessions: A6NMF5 B2R7R9 Q4TTG1 Q96FX4

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_003327.2  NP_861427.1  NP_861442.1  


    ENSEMBL proteins: 
    ENSP00000360624 ENSP00000384285 ENSP00000360613 ENSP00000335027 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Millipore Purified and/or Recombinant UBE2A Protein
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Enzo Life Sciences proteins for UBE2A
    Recombinant Proteins from Abcam (Rad6)
    Human Recombinant Proteins from Abnova (UBE2A)
                   OriGene Purified Recombinant Human Proteins (see all 2): UBE2A  


    Antibodies for UBE2A: 
    Invitrogen Antibodies for UBE2A
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    Antibodies from Abcam (Rad6), each with their AbpromiseSM
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    Novus Biologicals Antibodies for UBE2A

    Assays for UBE2A: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Enzo Life Sciences assays for UBE2A

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR000608 UBQ-conjugat_E2
     IPR016135 UBQ-conjugat/RWD-like


       GeneDecks  UBE2A for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P49459

    ProtoNet protein and cluster: P49459

    1 Blocks protein family: IPB000608 Ubiquitin-conjugating enzymes

    UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459
    Similarity: Belongs to the ubiquitin-conjugating enzyme family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (UBE2A)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (UBE2A)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_003336

                  Applied Biosystems Silencer® siRNAs for UBE2A

                  Sigma-Aldrich siRNA and siRNA Panels for UBE2A  
                         Sigma-Aldrich shRNA Panels and shRNA for UBE2A  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_003336
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_003336
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_003336 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003336

    UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459
    Function: Catalyzes the covalent attachment of ubiquitin to other proteins. Required for
    postreplication repair of UV-damaged DNA
    Catalytic activity: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein
    N-ubiquityllysine
    Enzyme Number (IUBMB): EC 6.3.2.19 

    Genatlas biochemistry entry for UBE2A:
    ubiquitin conjugating enzyme E2A,involved in post replication repair

    3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ube2a):

    growth/sizelethality-prenatal/perinatalreproductive system

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004842 ubiquitin-protein ligase activity IEA--
    GO:0016874 ligase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for UBE2A
     Common schema of ubiquitination

       GeneDecks  UBE2A for the pathways selected above  
    About GeneDecksing

    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  UBE2A  (Your Favorite Gene powered by Ingenuity) 
     Hypoxia Signaling in the Cardiovascular System
     Protein Ubiquitination Pathway

       GeneDecks  UBE2A for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for UBE2A):
     hsa04120 Ubiquitin mediated proteolysis

       GeneDecks  UBE2A for the pathways selected above  
    About GeneDecksing
    UniProtKB/Swiss-Prot: UBE2A_HUMAN, P49459
    Pathway: Protein modification; protein ubiquitination

     Gene Network CentralTM Interacting Genes and Proteins Network for  UBE2A 


    5/21 Interacting proteins for UBE2A (ENSP000003606243) via UniProtKB, MINT, and/or STRING (see all 21 )

    InteractantInteraction Details
    GeneCardExternal ID(s)
    TP53ENSP000002693053STRING (score=.969)
    MDM2ENSP000002581493STRING (score=.961)
    UBA1ENSP000003384133STRING (score=.958)
    CDC2ENSP000003629173STRING (score=.955)
    UBE3AENSP000002321653STRING (score=.951)
    About this table

    5 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006301 postreplication repair TAS1559696
    GO:0006511 ubiquitin-dependent protein catabolic process TAS1559696
    GO:0006974 response to DNA damage stimulus IEA--
    GO:0043687 post-translational protein modification IEA--
    GO:0051246 regulation of protein metabolic process IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for UBE2A

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (UBE2A)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (UBE2A)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_003336

                  Sigma-Aldrich siRNA and siRNA Panels for UBE2A  
                         Sigma-Aldrich shRNA Panels and shRNA for UBE2A  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003336  NM_181762  NM_181777  

    REFSEQ mRNAs for UBE2A gene (3 alternative transcripts): 

    NM_003336.2   NM_181762.1   NM_181777.1   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003336  NM_181762  NM_181777  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_003336
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_003336
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_003336 

    Additional cDNA sequence: 

    AK223045.1 AK223064.1 AK297696.1 AK301675.1 AK313092.1 BC010175.2 BC042021.1 CR592668.1 
    CR595604.1 CR598158.1 CR598456.1 CR600075.1 CR603049.1 CR608682.1 CR614387.1 CR614696.1 
    CR616784.1 CR618296.1 CR621348.1 CR622728.1 D28459.1 M74524.1 

    20 DOTS entries:

    DT.452059  DT.92407072  DT.91959936  DT.100795889  DT.40121076  DT.75112169  DT.121299908  DT.121299914 
    DT.91789984  DT.95324926  DT.100795884  DT.100795886  DT.100795888  DT.121299884  DT.121299910  DT.91813739 
    DT.97824937  DT.100758018  DT.91999652  DT.97791444 

    24/408 AceView cDNA sequences (see all 408 ):

    CA424516 AI300485 BE349961 AA594270 AA825629 CB127128 D20353 BM671147 
    AW205767 AI609766 CR608682 BQ717080 AA747564 CR600075 CR616784 AA804394 
    CR618296 BQ006384 BM127839 CR592668 CR614696 BM128046 BQ576081 AI087376 

    highest scoring ESTs for UBE2A:

    M74524 AA000982 AA015815 AA029245 AA032037 AA034264 AA043941 AA044203 AA045750 AA045751 

    Unigene Cluster for UBE2A:

    Ubiquitin-conjugating enzyme E2A (RAD6 homolog)
    Hs.379466  [show with all ESTs]
    Unigene Representative Sequence: BC042021


    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for UBE2A (see all 7 )

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d
    SP1:                                                  -     -           -                                       
    SP2:                          -                       -     -           -                                       
    SP3:                                                  -                 -                                       
    SP4:                                                  -     -     -     -                                       
    SP5:                                      -     -     -     -           -                                       

    About this scheme

    ECgene alternative splicing isoforms for UBE2A

    4 Ensembl transcripts including schematic representations:
    ENST00000371569  ENST00000404672  ENST00000371558  ENST00000346330  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    UBE2A expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for UBE2A

    1 / 2 / 3

    5 probe-sets matching UBE2A gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    890_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 M74524 1.00 1.00 1.00 1

    201898_s_at2, 3 U133-A 1 1.00 1.00 -- -- AI126625 0.80 1.00 0.91 1

    201899_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_003336 0.60 1.00 0.82 1

    201898_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    201899_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CGGGACTTCA

    SOURCE GeneReport for Unigene cluster: Hs.379466

    Expression variation in blood from EXPOLDB for UBE2A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for UBE2A gene from 5/17 species (see all 17 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    UBE2A1   -- ubiquitin-conjugating enzyme E2A (RAD6 homolog) 95.61(n)
    100(a)
    492095  XM_549217.2  XP_549217.2 
    chimpanzee
    (Pan troglodytes)
    UBE2A1   -- ubiquitin-conjugating enzyme E2A (RAD6 homolog) 99.78(n)
    100(a)
    737175  XM_001137388.1  XP_001137388.1 
    rat
    (Rattus norvegicus)
    Ube2a1   -- ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. more 93.2(n)
    100(a)
    298317  NM_001013933.1  NP_001013955.1 
    mouse
    (Mus musculus)
    Ube2a1, 5 X5
    ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. more1, 5 93.42(n)1
    100(a)1
    222091  NM_019668.31  NP_062642.11 
     AF0898125  AF3831485  (see all 19)
    chicken
    (Gallus gallus)
    UBE2A1   -- ubiquitin-conjugating enzyme E2A (RAD6 homolog) 89.04(n)
    100(a)
    395672  NM_204865.1  NP_990196.1 
    About this table        Species with no ortholog for UBE2A

    ENSEMBL Gene Tree for UBE2A
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for UBE2A gene
    UBE2B2  UBE2C2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/76 NCBI SNPs in UBE2A are shown (see all 76 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 42)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr X posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs22390051,2
    C,F,H118597504(+) ATATTT/CCTctc 3 -- ng51 int19Minor allele frequency- C:0.17EU EA WA NS 606
    rs59106191,2
    A,C,F118591854(+) TACTCT/CGCCTG 2 -- ng515Minor allele frequency- C:0.20NS 139
    --
    rs59096401,2
    A,C118602656(+) agtggC/Ttcacg 3 -- ng310--------
    rs341388741,2
    C,F118599448(+) ACTACT/CGAACA 3 -- int1 ut515Minor allele frequency- C:0.02NS 137
    rs149821,2
    C118602293(+) TGTCTA/GATGTT 3 -- ut31 ese31Minor allele frequency- G:0.00MN 184
    rs128637471,2
    H118592080(+) CCGAAG/AGGGTT 2 -- ng514Minor allele frequency- A:0.00EU EA WA 418
    rs355705331,2
    F118601770(+) AAGATC/ATCAGT 3 -- ut315Minor allele frequency- A:0.01NS 143
    rs342287981,2
    F118597969(+) GAAGAA/TCTGTG 3 -- int1 ng515Minor allele frequency- T:0.01NS 186
    rs350688481,2
    F118601826(+) GAAGGA/TCTCAG 3 -- ut315Minor allele frequency- T:0.02NS 143
    rs358262681,2
    F118592083(+) AAGGGG/ATTGTG 2 -- ng515Minor allele frequency- A:0.01NS 146
    About this table

    HapMap Linkage Disequilibrium images for UBE2A (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 312180

    1 PharmGKB disease relationship for UBE2A gene

    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Leukemia, Lymphocytic, Acute, L1FA  GN  12086872 12730115
    About this table

    Human Gene Mutation Database: UBE2A

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/23 PubMed articles for UBE2A gene (see all 23 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 7319 HGNC: 12472 AceView: UBE2A Ensembl:ENSG00000077721 euGenes: HUgn7319
    ECgene: UBE2A H-InvDB: UBE2A
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for UBE2A Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/ube2a/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for UBE2A:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Recombinant Proteins
    (Rad6)
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     Tagged/untagged cDNA clones
     Validated SYBR primer pairs
     Purified proteins from HEK293T cells
     Western blot validated antibodies
     shRNA in GFP-retroviral vector
     Search Tocris compounds for UBE2A




     Assays/Proteins for UBE2A
     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for UBE2A

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