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Aliases for UBBP4 Gene

Aliases for UBBP4 Gene

  • Ubiquitin B Pseudogene 4 2 3

External Ids for UBBP4 Gene

Summaries for UBBP4 Gene

GeneCards Summary for UBBP4 Gene

UBBP4 (Ubiquitin B Pseudogene 4) is a Pseudogene. An important paralog of this gene is UBB.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBBP4 Gene

Genomics for UBBP4 Gene

Genomic Location for UBBP4 Gene

Start:
22,202,995 bp from pter
End:
22,205,156 bp from pter
Size:
2,162 bases
Orientation:
Plus strand

Genomic View for UBBP4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for UBBP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP4 Gene

No data available for Regulatory Elements for UBBP4 Gene

Proteins for UBBP4 Gene

  • Protein details for UBBP4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    J3KSM4-J3KSM4
    Recommended name:
    Protein UBBP4
    Protein Accession:
    J3KSM4
    Secondary Accessions:

    Protein attributes for UBBP4 Gene

    Size:
    98 amino acids
    Molecular mass:
    11074 Da
    Quaternary structure:
    No Data Available
  • Protein details for UBBP4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    J3QL68-J3QL68
    Recommended name:
    Protein UBBP4
    Protein Accession:
    J3QL68
    Secondary Accessions:

    Protein attributes for UBBP4 Gene

    Size:
    25 amino acids
    Molecular mass:
    2878 Da
    Quaternary structure:
    No Data Available
  • Protein details for UBBP4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    J3QLP7-J3QLP7
    Recommended name:
    Protein UBBP4
    Protein Accession:
    J3QLP7
    Secondary Accessions:

    Protein attributes for UBBP4 Gene

    Size:
    224 amino acids
    Molecular mass:
    25154 Da
    Quaternary structure:
    No Data Available
  • Protein details for UBBP4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    J3QRK5-J3QRK5
    Recommended name:
    Protein UBBP4
    Protein Accession:
    J3QRK5
    Secondary Accessions:

    Protein attributes for UBBP4 Gene

    Size:
    229 amino acids
    Molecular mass:
    25797 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for UBBP4 Gene

  • Protein details for UBBP4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    K7EMA8-K7EMA8
    Recommended name:
    Protein UBBP4
    Protein Accession:
    K7EMA8
    Secondary Accessions:

    Protein attributes for UBBP4 Gene

    Size:
    53 amino acids
    Molecular mass:
    5962 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UBBP4 Gene

Proteomics data for UBBP4 Gene at MOPED

Post-translational modifications for UBBP4 Gene

No Post-translational modifications

Other Protein References for UBBP4 Gene

No data available for DME Specific Peptides for UBBP4 Gene

Domains for UBBP4 Gene

Protein Domains for UBBP4 Gene

genes like me logo Genes that share domains with UBBP4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for UBBP4 Gene

Function for UBBP4 Gene

Gene Ontology (GO) - Molecular Function for UBBP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with UBBP4: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for UBBP4 Gene

Localization for UBBP4 Gene

Gene Ontology (GO) - Cellular Components for UBBP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
genes like me logo Genes that share ontologies with UBBP4: view

Pathways for UBBP4 Gene

SuperPathways for UBBP4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UBBP4 Gene

None

No data available for Pathways by source for UBBP4 Gene

Transcripts for UBBP4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP4 Gene

No ASD Table

Relevant External Links for UBBP4 Gene

GeneLoc Exon Structure for
UBBP4
ECgene alternative splicing isoforms for
UBBP4

Expression for UBBP4 Gene

mRNA expression in normal human tissues for UBBP4 Gene

mRNA differential expression in normal tissues according to GTEx for UBBP4 Gene

This gene is overexpressed in Testis (37.1).
genes like me logo Genes that share expressions with UBBP4: view

Orthologs for UBBP4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for UBBP4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UBB 37
  • 63 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia UBC 37
  • 48 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm5239 37
  • 63 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 65 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves UBB 37
  • 49 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia UBBP4 37
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ubb 37
  • 89 (a)
ManyToMany
ubc 37
  • 41 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Ubi-p5E 37
  • 40 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ubq-1 37
  • 25 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL40A 37
  • 63 (a)
ManyToMany
RPL40B 37
  • 63 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 59 (a)
ManyToMany
Species with no ortholog for UBBP4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for UBBP4 Gene

ENSEMBL:
Gene Tree for UBBP4 (if available)
TreeFam:
Gene Tree for UBBP4 (if available)

Paralogs for UBBP4 Gene

Paralogs for UBBP4 Gene

Selected SIMAP similar genes for UBBP4 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with UBBP4: view

Variants for UBBP4 Gene

Relevant External Links for UBBP4 Gene

HapMap Linkage Disequilibrium report
UBBP4

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for UBBP4 Gene

Disorders for UBBP4 Gene

No disorders were found for UBBP4 Gene.

No data available for UniProtKB/Swiss-Prot for UBBP4 Gene

Publications for UBBP4 Gene

  1. Human ubiquitin genes: one member of the UbB gene subfamily is a tetrameric non-processed pseudogene. (PMID: 2834222) Cowland J.B. … Vuust J. (FEBS Lett. 1988) 2 3
  2. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. (PMID: 2154095) Webb G.C. … Board P.G. (Am. J. Hum. Genet. 1990) 3

Products for UBBP4 Gene

Sources for UBBP4 Gene

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