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Aliases for UBBP4 Gene

Aliases for UBBP4 Gene

  • Ubiquitin B Pseudogene 4 2 3 5

External Ids for UBBP4 Gene

Previous GeneCards Identifiers for UBBP4 Gene

  • GC17U990162
  • GC17P021581
  • GC17P021876
  • GC17P021654
  • GC17P021740
  • GC17P022230
  • GC17P022538
  • GC17P022547
  • GC17P022709
  • GC17P023036
  • GC17P023324
  • GC17P023612

Summaries for UBBP4 Gene

GeneCards Summary for UBBP4 Gene

UBBP4 (Ubiquitin B Pseudogene 4) is a Pseudogene.

Additional gene information for UBBP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBBP4 Gene

Genomics for UBBP4 Gene

Regulatory Elements for UBBP4 Gene

Promoters for UBBP4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000092530 1306 199

Genomic Locations for UBBP4 Gene

Genomic Locations for UBBP4 Gene
2,162 bases
Plus strand

Genomic View for UBBP4 Gene

Genes around UBBP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBBP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBBP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP4 Gene

Proteins for UBBP4 Gene

Post-translational modifications for UBBP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBBP4 Gene

Domains & Families for UBBP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBBP4 Gene

Function for UBBP4 Gene

Phenotypes From GWAS Catalog for UBBP4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for UBBP4 Gene

Localization for UBBP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBBP4 Gene

Pathways & Interactions for UBBP4 Gene

SuperPathways for UBBP4 Gene

No Data Available

Interacting Proteins for UBBP4 Gene

Gene Ontology (GO) - Biological Process for UBBP4 Gene


No data available for Pathways by source and SIGNOR curated interactions for UBBP4 Gene

Drugs & Compounds for UBBP4 Gene

No Compound Related Data Available

Transcripts for UBBP4 Gene

mRNA/cDNA for UBBP4 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP4 Gene

No ASD Table

Relevant External Links for UBBP4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UBBP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBBP4 Gene

mRNA differential expression in normal tissues according to GTEx for UBBP4 Gene

This gene is overexpressed in Testis (x37.1).

NURSA nuclear receptor signaling pathways regulating expression of UBBP4 Gene:

genes like me logo Genes that share expression patterns with UBBP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBBP4 Gene

Orthologs for UBBP4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for UBBP4 Gene

Organism Taxonomy Gene Similarity Type Details
(Monodelphis domestica)
Mammalia -- 34
  • 65 (a)
(Mus musculus)
Mammalia Gm5239 34
  • 63 (a)
(Pan troglodytes)
Mammalia UBB 34
  • 63 (a)
(Bos Taurus)
Mammalia UBC 34
  • 48 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 28 (a)
(Gallus gallus)
Aves UBB 34
  • 49 (a)
(Anolis carolinensis)
Reptilia UBBP4 34
  • 71 (a)
(Danio rerio)
Actinopterygii ubb 34
  • 89 (a)
ubc 34
  • 41 (a)
fruit fly
(Drosophila melanogaster)
Insecta Ubi-p5E 34
  • 40 (a)
(Caenorhabditis elegans)
Secernentea ubq-1 34
  • 25 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL40B 34
  • 63 (a)
RPL40A 34
  • 63 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 59 (a)
Species where no ortholog for UBBP4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for UBBP4 Gene

Gene Tree for UBBP4 (if available)
Gene Tree for UBBP4 (if available)

Paralogs for UBBP4 Gene

(14) SIMAP similar genes for UBBP4 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with UBBP4: view

No data available for Paralogs for UBBP4 Gene

Variants for UBBP4 Gene

Sequence variations from dbSNP and Humsavar for UBBP4 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000528781 -- 22,204,943(+) ACTCT(C/T)TCTGA nc-transcript-variant
rs1000643480 -- 22,205,197(+) TGGGT(A/G)CACTT downstream-variant-500B
rs1001069888 -- 22,201,005(+) GGGGG(G/T)GGGGG upstream-variant-2KB
rs1001317338 -- 22,204,059(+) AGATG(A/G)CACGC intron-variant
rs1001431656 -- 22,204,277(+) CATCC(A/G)GAAAG nc-transcript-variant

Variation tolerance for UBBP4 Gene

Gene Damage Index Score: 11.07; 92.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UBBP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for UBBP4 Gene

Disorders for UBBP4 Gene

Relevant External Links for UBBP4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for UBBP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBBP4 Gene

Publications for UBBP4 Gene

  1. Human ubiquitin genes: one member of the UbB gene subfamily is a tetrameric non-processed pseudogene. (PMID: 2834222) Cowland JB … Vuust J (FEBS letters 1988) 2 3 60
  2. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R … Boisvert FM (Molecular & cellular proteomics : MCP 2015) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  5. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. (PMID: 2154095) Webb GC … Board PG (American journal of human genetics 1990) 3 60

Products for UBBP4 Gene

Sources for UBBP4 Gene

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