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Aliases for UBBP4 Gene

Aliases for UBBP4 Gene

  • Ubiquitin B Pseudogene 4 2 3 5

External Ids for UBBP4 Gene

Previous GeneCards Identifiers for UBBP4 Gene

  • GC17U990162
  • GC17P021581
  • GC17P021876
  • GC17P021654
  • GC17P021740
  • GC17P022230
  • GC17P022538
  • GC17P022547

Summaries for UBBP4 Gene

GeneCards Summary for UBBP4 Gene

UBBP4 (Ubiquitin B Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBBP4 Gene

Genomics for UBBP4 Gene

Regulatory Elements for UBBP4 Gene

Enhancers for UBBP4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around UBBP4 on UCSC Golden Path with GeneCards custom track

Promoters for UBBP4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around UBBP4 on UCSC Golden Path with GeneCards custom track

Genomic Location for UBBP4 Gene

Chromosome:
17
Start:
22,202,995 bp from pter
End:
22,205,156 bp from pter
Size:
2,162 bases
Orientation:
Plus strand

Genomic View for UBBP4 Gene

Genes around UBBP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBBP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBBP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP4 Gene

Proteins for UBBP4 Gene

Post-translational modifications for UBBP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBBP4 Gene

Domains & Families for UBBP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBBP4 Gene

Function for UBBP4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for UBBP4 Gene

Localization for UBBP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UBBP4 Gene

Pathways & Interactions for UBBP4 Gene

SuperPathways for UBBP4 Gene

No Data Available

Interacting Proteins for UBBP4 Gene

Gene Ontology (GO) - Biological Process for UBBP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBBP4 Gene

Drugs & Compounds for UBBP4 Gene

No Compound Related Data Available

Transcripts for UBBP4 Gene

mRNA/cDNA for UBBP4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP4 Gene

No ASD Table

Relevant External Links for UBBP4 Gene

GeneLoc Exon Structure for
UBBP4
ECgene alternative splicing isoforms for
UBBP4

Expression for UBBP4 Gene

mRNA expression in normal human tissues for UBBP4 Gene

mRNA differential expression in normal tissues according to GTEx for UBBP4 Gene

This gene is overexpressed in Testis (x37.1).
genes like me logo Genes that share expression patterns with UBBP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for UBBP4 Gene

Orthologs for UBBP4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for UBBP4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia UBC 36
  • 48 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 65 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm5239 36
  • 63 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 28 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia UBB 36
  • 63 (a)
ManyToMany
chicken
(Gallus gallus)
Aves UBB 36
  • 49 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia UBBP4 36
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ubb 36
  • 89 (a)
ManyToMany
ubc 36
  • 41 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Ubi-p5E 36
  • 40 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ubq-1 36
  • 25 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL40A 36
  • 63 (a)
ManyToMany
RPL40B 36
  • 63 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 59 (a)
ManyToMany
Species with no ortholog for UBBP4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for UBBP4 Gene

ENSEMBL:
Gene Tree for UBBP4 (if available)
TreeFam:
Gene Tree for UBBP4 (if available)

Paralogs for UBBP4 Gene

(14) SIMAP similar genes for UBBP4 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with UBBP4: view

No data available for Paralogs for UBBP4 Gene

Variants for UBBP4 Gene

Variation tolerance for UBBP4 Gene

Gene Damage Index Score: 11.07; 92.19% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for UBBP4 Gene

Disorders for UBBP4 Gene

Relevant External Links for UBBP4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBBP4

No disorders were found for UBBP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBBP4 Gene

Publications for UBBP4 Gene

  1. Human ubiquitin genes: one member of the UbB gene subfamily is a tetrameric non-processed pseudogene. (PMID: 2834222) Cowland J.B. … Vuust J. (FEBS Lett. 1988) 2 3 67
  2. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3
  3. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. (PMID: 2154095) Webb G.C. … Board P.G. (Am. J. Hum. Genet. 1990) 3

Products for UBBP4 Gene

Sources for UBBP4 Gene

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