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Aliases for UBBP1 Gene

Aliases for UBBP1 Gene

  • Ubiquitin B Pseudogene 1 2 3 5

External Ids for UBBP1 Gene

Previous GeneCards Identifiers for UBBP1 Gene

  • GC02U990085
  • GC02M137109
  • GC02M137297
  • GC02M136920
  • GC02M136803

Summaries for UBBP1 Gene

GeneCards Summary for UBBP1 Gene

UBBP1 (Ubiquitin B Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBBP1 Gene

Genomics for UBBP1 Gene

Regulatory Elements for UBBP1 Gene

Enhancers for UBBP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F136322 1.4 FANTOM5 Ensembl ENCODE 0.8 +4.7 4702 6.6 TBP PKNOX1 TBL1XR1 YBX1 BMI1 THRB RFX5 EGR1 SCRT2 ZNF207 CXCR4 UBBP1 ENSG00000279024
GH02F136329 0.7 Ensembl 0.8 +0.4 402 0.4 CXCR4 UBBP1 ENSG00000279024
GH02F136319 1.2 Ensembl ENCODE 0.4 +10.4 10382 0.9 IKZF1 NRF1 EED EBF1 ZIC2 UBBP1 ENSG00000279024
GH02F136311 0.7 Ensembl 0.3 +18.7 18702 0.6 IKZF1 NFE2 UBBP1 ENSG00000279024
GH02F136305 1.2 FANTOM5 ENCODE 0.3 +24.2 24202 0.7 HDGF TBP MXI1 USF1 MTA2 USF2 MAX TBX21 EP300 RAD51 CXCR4 UBBP1 ENSG00000279024
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around UBBP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for UBBP1 Gene

Chromosome:
2
Start:
136,329,300 bp from pter
End:
136,330,002 bp from pter
Size:
703 bases
Orientation:
Minus strand

Genomic View for UBBP1 Gene

Genes around UBBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBBP1 Gene

Proteins for UBBP1 Gene

Post-translational modifications for UBBP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBBP1 Gene

Domains & Families for UBBP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBBP1 Gene

Function for UBBP1 Gene

Molecular function for UBBP1 Gene

GENATLAS Biochemistry:
ubiquitin B,pseudogene 1

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBBP1 Gene

Localization for UBBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UBBP1 Gene

Pathways & Interactions for UBBP1 Gene

SuperPathways for UBBP1 Gene

No Data Available

Interacting Proteins for UBBP1 Gene

Gene Ontology (GO) - Biological Process for UBBP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBBP1 Gene

Transcripts for UBBP1 Gene

mRNA/cDNA for UBBP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UBBP1 Gene

No ASD Table

Relevant External Links for UBBP1 Gene

GeneLoc Exon Structure for
UBBP1
ECgene alternative splicing isoforms for
UBBP1

Expression for UBBP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UBBP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UBBP1 Gene:

UBBP1
genes like me logo Genes that share expression patterns with UBBP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for UBBP1 Gene

Orthologs for UBBP1 Gene

Evolution for UBBP1 Gene

ENSEMBL:
Gene Tree for UBBP1 (if available)
TreeFam:
Gene Tree for UBBP1 (if available)

No data available for Orthologs for UBBP1 Gene

Paralogs for UBBP1 Gene

No data available for Paralogs for UBBP1 Gene

Variants for UBBP1 Gene

Relevant External Links for UBBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBBP1 Gene

Disorders for UBBP1 Gene

Relevant External Links for UBBP1

Genetic Association Database (GAD)
UBBP1

No disorders were found for UBBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBBP1 Gene

Publications for UBBP1 Gene

  1. Genome-wide association study of pancreatic cancer in Japanese population. (PMID: 20686608) Low S.K. … Sakamoto H. (PLoS ONE 2010) 46 64
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64
  3. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S. … Wolf P.A. (BMC Med. Genet. 2007) 46 64
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64

Products for UBBP1 Gene

Sources for UBBP1 Gene

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