Free for academic non-profit institutions. Other users need a Commercial license

Aliases for UBAC2-AS1 Gene

Subcategory (RNA class) for UBAC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBAC2-AS1 Gene

  • UBAC2 Antisense RNA 1 2 3 5
  • UBAC2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UBAC2-AS1 Gene

Previous GeneCards Identifiers for UBAC2-AS1 Gene

  • GC13M099850

Summaries for UBAC2-AS1 Gene

GeneCards Summary for UBAC2-AS1 Gene

UBAC2-AS1 (UBAC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBAC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBAC2-AS1 Gene

Genomics for UBAC2-AS1 Gene

Regulatory Elements for UBAC2-AS1 Gene

Enhancers for UBAC2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H099198 1.4 ENCODE dbSUPER 0.7 +0.1 109 5 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 SP5 LINC00554 STK24-AS1 UBAC2 RN7SKP9 LINC01039 CFL1P8 GPR18 UBAC2-AS1
GH13H099204 1.3 Ensembl ENCODE dbSUPER 0.7 -3.7 -3726 2 HDGF PKNOX1 TBL1XR1 CHD4 BATF RELA EED ATF7 ETV6 RUNX3 UBAC2 GC13P099207 UBAC2-AS1
GH13H099203 0.5 ENCODE dbSUPER 0.7 -2.5 -2549 0 GC13P099207 UBAC2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBAC2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UBAC2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000065042 -143 2601 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 SP5

Genomic Location for UBAC2-AS1 Gene

Chromosome:
13
Start:
99,196,374 bp from pter
End:
99,200,757 bp from pter
Size:
4,384 bases
Orientation:
Minus strand

Genomic View for UBAC2-AS1 Gene

Genes around UBAC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBAC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBAC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBAC2-AS1 Gene

Proteins for UBAC2-AS1 Gene

Post-translational modifications for UBAC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBAC2-AS1 Gene

Domains & Families for UBAC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBAC2-AS1 Gene

Function for UBAC2-AS1 Gene

Phenotypes From GWAS Catalog for UBAC2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UBAC2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBAC2-AS1 Gene

Localization for UBAC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBAC2-AS1 Gene

Pathways & Interactions for UBAC2-AS1 Gene

SuperPathways for UBAC2-AS1 Gene

No Data Available

Interacting Proteins for UBAC2-AS1 Gene

Gene Ontology (GO) - Biological Process for UBAC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBAC2-AS1 Gene

Drugs & Compounds for UBAC2-AS1 Gene

No Compound Related Data Available

Transcripts for UBAC2-AS1 Gene

mRNA/cDNA for UBAC2-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBAC2-AS1 Gene

UBAC2 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for UBAC2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for UBAC2-AS1 Gene

No ASD Table

Relevant External Links for UBAC2-AS1 Gene

GeneLoc Exon Structure for
UBAC2-AS1
ECgene alternative splicing isoforms for
UBAC2-AS1

Expression for UBAC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBAC2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UBAC2-AS1 Gene

This gene is overexpressed in Testis (x6.8).

SOURCE GeneReport for Unigene cluster for UBAC2-AS1 Gene:

Hs.225914
genes like me logo Genes that share expression patterns with UBAC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBAC2-AS1 Gene

Orthologs for UBAC2-AS1 Gene

Evolution for UBAC2-AS1 Gene

ENSEMBL:
Gene Tree for UBAC2-AS1 (if available)
TreeFam:
Gene Tree for UBAC2-AS1 (if available)

No data available for Orthologs for UBAC2-AS1 Gene

Paralogs for UBAC2-AS1 Gene

No data available for Paralogs for UBAC2-AS1 Gene

Variants for UBAC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBAC2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000176459 -- 99,199,790(+) TGTCA(C/T)TTCTT intron-variant, upstream-variant-2KB
rs1000234627 -- 99,201,917(+) AAACA(C/G)AAAAA intron-variant, upstream-variant-2KB
rs1000327534 -- 99,202,216(+) TCAGG(C/T)TTTGA intron-variant, upstream-variant-2KB
rs1000804975 -- 99,198,268(+) CAAGC(A/G)ATTCT intron-variant
rs1001278009 -- 99,198,734(+) ACATT(C/T)TGGAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for UBAC2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3582749 CNV gain 25503493
esv3892433 CNV gain 25118596
nsv1050094 CNV gain 25217958

Relevant External Links for UBAC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBAC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UBAC2-AS1 Gene

Disorders for UBAC2-AS1 Gene

Relevant External Links for UBAC2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBAC2-AS1

No disorders were found for UBAC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBAC2-AS1 Gene

Publications for UBAC2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. (PMID: 11991713) Christian SL … Gershon ES (Genomics 2002) 3 60

Products for UBAC2-AS1 Gene

Sources for UBAC2-AS1 Gene

Content
Loading form....