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Aliases for UBAC2-AS1 Gene

Subcategory (RNA class) for UBAC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBAC2-AS1 Gene

  • UBAC2 Antisense RNA 1 2 3 5
  • UBAC2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for UBAC2-AS1 Gene

Previous GeneCards Identifiers for UBAC2-AS1 Gene

  • GC13M099850

Summaries for UBAC2-AS1 Gene

GeneCards Summary for UBAC2-AS1 Gene

UBAC2-AS1 (UBAC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBAC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBAC2-AS1 Gene

Genomics for UBAC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for UBAC2-AS1 Gene

Promoters and enhancers for UBAC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I099198 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.1 108 5.1 PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 UBAC2 UBAC2-AS1 STK24-AS1 GPR18
GH13I099204 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 -3.7 -3726 2.2 HDGF PKNOX1 CHD4 EBF1 BATF IRF4 RELA ATF7 ETV6 BCLAF1 GC13P099207 RN7SKP9 UBAC2 UBAC2-AS1
GH13I099196 Enhancer 0.7 ENCODE dbSUPER 0.8 +3.6 3628 1.4 ZNF335 CTCF RAD21 ZBTB17 GPR18 UBAC2 UBAC2-AS1 GC13P099191
GH13I099203 Enhancer 0.4 ENCODE dbSUPER 0.8 -2.5 -2548 0.2 GC13P099207 UBAC2 UBAC2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UBAC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UBAC2-AS1 Gene

Genomic Locations for UBAC2-AS1 Gene
chr13:99,196,374-99,200,757
(GRCh38/hg38)
Size:
4,384 bases
Orientation:
Minus strand
chr13:99,848,628-99,853,011
(GRCh37/hg19)

Genomic View for UBAC2-AS1 Gene

Genes around UBAC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBAC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBAC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBAC2-AS1 Gene

Proteins for UBAC2-AS1 Gene

Post-translational modifications for UBAC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBAC2-AS1 Gene

Domains & Families for UBAC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBAC2-AS1 Gene

Function for UBAC2-AS1 Gene

Phenotypes From GWAS Catalog for UBAC2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBAC2-AS1 Gene

Localization for UBAC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBAC2-AS1 Gene

Pathways & Interactions for UBAC2-AS1 Gene

SuperPathways for UBAC2-AS1 Gene

No Data Available

Interacting Proteins for UBAC2-AS1 Gene

Gene Ontology (GO) - Biological Process for UBAC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBAC2-AS1 Gene

Drugs & Compounds for UBAC2-AS1 Gene

No Compound Related Data Available

Transcripts for UBAC2-AS1 Gene

mRNA/cDNA for UBAC2-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for UBAC2-AS1 Gene

UBAC2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UBAC2-AS1 Gene

No ASD Table

Relevant External Links for UBAC2-AS1 Gene

GeneLoc Exon Structure for
UBAC2-AS1
ECgene alternative splicing isoforms for
UBAC2-AS1

Expression for UBAC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBAC2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for UBAC2-AS1 Gene

This gene is overexpressed in Testis (x6.8).

SOURCE GeneReport for Unigene cluster for UBAC2-AS1 Gene:

Hs.225914
genes like me logo Genes that share expression patterns with UBAC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBAC2-AS1 Gene

Orthologs for UBAC2-AS1 Gene

Evolution for UBAC2-AS1 Gene

ENSEMBL:
Gene Tree for UBAC2-AS1 (if available)
TreeFam:
Gene Tree for UBAC2-AS1 (if available)

No data available for Orthologs for UBAC2-AS1 Gene

Paralogs for UBAC2-AS1 Gene

No data available for Paralogs for UBAC2-AS1 Gene

Variants for UBAC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBAC2-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000176459 -- 99,199,790(-) T/C intron_variant
rs1000234627 -- 99,201,917(-) C/G upstream_transcript_variant
rs1000327534 -- 99,202,216(-) T/C upstream_transcript_variant
rs1000804975 -- 99,198,268(-) G/A intron_variant
rs1001278009 -- 99,198,734(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for UBAC2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3582749 CNV gain 25503493
esv3892433 CNV gain 25118596
nsv1050094 CNV gain 25217958

Additional Variant Information for UBAC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBAC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for UBAC2-AS1 Gene

Disorders for UBAC2-AS1 Gene

Additional Disease Information for UBAC2-AS1

No disorders were found for UBAC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBAC2-AS1 Gene

Publications for UBAC2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. (PMID: 11991713) Christian SL … Gershon ES (Genomics 2002) 3 58

Products for UBAC2-AS1 Gene

Sources for UBAC2-AS1 Gene

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