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Aliases & Descriptions for UBA7
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| D8 1, 2, 3 | | MGC12713 2 | | UBA1B 1, 2 | | UBE1L 2, 3 | | UBE2 1, 2, 3 |
| | | Descriptions |
|---|
| UBA1, ubiquitin-activating enzyme E1 homolog B 2 | | UBA7, ubiquitin-activating enzyme E1 2 | | Ubiquitin-activating enzyme 7 3 | | Ubiquitin-activating enzyme E1 homolog 3 | | ubiquitin-activating enzyme E1-like 1, 2 | | ubiquitin-activating enzyme E1-related protein 2 | | ubiquitin-activating enzyme-2 2 | | ubiquitin-like modifier activating enzyme 7 2 |
|
| | Search outside databases for aliases for UBA7 gene |
Summaries for UBA7(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for UBA7: The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E1 ubiquitin-activating enzyme family. The encoded enzyme is a retinoid target that triggers promyelocytic leukemia (PML)/retinoic acid receptor alpha (RARalpha) degradation and apoptosis in acute promyelocytic leukemia, where it is involved in the conjugation of the ubiquitin-like interferon-stimulated gene 15 protein. [provided by RefSeq] UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226Function: Activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMPGene Wiki entry for UBA7 (UBE1L) |
Genomic Location for UBA7
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3p21 Ensembl cytogenetic band: 3p21.31 HGNC cytogenetic band: 3p21UBA7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M049818:
(about GC identifiers)
Start:
|
49,817,642 bp from pter |
End:
|
49,826,395 bp from pter |
Size:
|
8,754 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for UBA7
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226 (See
protein sequence)Recommended Name: Ubiquitin-like modifier-activating enzyme 7 Size: 1012 amino acids; 111694 Da
Subunit: Monomer (By similarity). Binds and is involved in the conjugation of G1P2/ISG15
Miscellaneous: There are two active sites within the E1 molecule, allowing it to accommodate two ubiquitin moieties at a time, with a new ubiquitin forming an adenylate intermediate as the previous one is transferred to the thiol site
Secondary accessions: Q9BRB2Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003326.2
ENSEMBL proteins: ENSP00000333266
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for UBA7: Assays for UBA7: | Protein
Domains/ Families for UBA7(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P41226
ProtoNet protein and cluster: P41226 2 Blocks protein families: IPB000011 Ubiquitin-activating enzyme IPB000594 UBA/THIF-type NAD/FAD binding fold
UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226Similarity: Belongs to the ubiquitin-activating E1 family | Gene Function for UBA7
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003335
Applied Biosystems Silencer® siRNAs for UBA7
Sigma-Aldrich siRNA and siRNA Panels for UBA7  Sigma-Aldrich shRNA Panels and shRNA for UBA7  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003335                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003335                                  untagged cDNA clone in CMV expression vector: NM_003335 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003335
UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226Function: Activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Uba7):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for UBA7
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226Pathway: Protein modification; protein ubiquitination Gene Network CentralTM Interacting Genes and Proteins Network for UBA7 
5/9 Interacting proteins for UBA7 (ENSP000003332663 P412262) via UniProtKB, MINT, and/or STRING (see all 9
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for UBA7(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for UBA7
|
Transcripts for UBA7(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003335
Sigma-Aldrich siRNA and siRNA Panels for UBA7  Sigma-Aldrich shRNA Panels and shRNA for UBA7  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003335 REFSEQ mRNAs for UBA7 gene: NM_003335.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003335               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003335                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003335                                  untagged cDNA clone in CMV expression vector: NM_003335  Additional cDNA sequence: BC006378.2 BT007026.1 L13852.1 11 DOTS entries: DT.445469 DT.92430180 DT.95243263 DT.40108845 DT.95113689 DT.100787258 DT.40194929 DT.100787255 DT.95113692 DT.97844492 DT.97864605 24/213 AceView cDNA sequences (see all 213
):AL044030 BT007026 AL547566 AW576378 BQ073643 BF917672 BQ215515 CD364579 CA866495 CD516564 CA866761 CA422452 BF848533 BF935874 AL044026 CK430594 CA426107 CD370845 CF453713 BF847898 BM671696 BC006378 BX482902 BQ214509 Unigene Cluster for UBA7: Ubiquitin-like modifier activating enzyme 7 Hs.16695 [show with all ESTs]Unigene Representative Sequence: NM_003335
GeneLoc Exon Structure
5/14 Alternative Splicing Database (ASD) splice patterns (SP) for UBA7 (see all 14
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15a | · | 15b | ^ | 16a | · | 16b | · | 16c | ^ | 17 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 18 | ^ | 19a | · | 19b | · | 19c | · | 19d | ^ | 20 | ^ | 21a | · | 21b | ^ | 22 | ^ | 23a | · | 23b | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for UBA7
1 Ensembl transcript including schematic representation: ENST00000333486
|
Expression for UBA7
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| UBA7 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for UBA7
1 / 2 5 probe-sets matching UBA7 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGGACTTTGT
SOURCE GeneReport for Unigene cluster: Hs.16695 UniProtKB/Swiss-Prot: UBA7_HUMAN, P41226Tissue specificity: Expressed in a variety of normal and tumor cell types, but is reduced in lung cancer cell lines |
Orthologs for UBA7
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for UBA7 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for UBA7
ENSEMBL Gene Tree for UBA7 | Paralogs for UBA7(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for UBA7 gene
- UBA62 UBA12
|
SNPs/Variants for UBA7(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for UBA7 (up to first 250kb)
|
Disorders & Mutations for UBA7
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 191325
4 Novoseek disease relationships for UBA7 gene
About this table
|
Medical News for UBA7(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for UBA7 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/32 PubMed articles for UBA7 gene (see all 32
):- A gene in the chromosomal region 3p21 with greatly reduced expression in lung cancer is similar to the gene for ubiquitin-activating enzyme. (PubMed id 8327486)2, 3, 4 Kok K.... Carritt B. (1993)
- Identification of interferon-stimulated gene 15 as an antiviral molecule during Sindbis virus infection in vivo. (PubMed id 16254333)3, 4 Lenschow D.J.... Virgin H.W. IV (2005)
- Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)3, 4 Gevaert K.... Vandekerckhove J. (2003)
- Influenza B virus NS1 protein inhibits conjugation of the interferon (IFN)-induced ubiquitin-like ISG15 protein. (PubMed id 11157743)3, 4 Yuan W. and Krug R.M. (2001)
- The genomic structure of the human UBE1L gene. (PubMed id 7734949)3, 4 Kok K....Buys C.H.C.M. (1995)
- UBE1L is a retinoid target that triggers PML/RARalpha degradation and apoptosis in acute promyelocytic leukemia. (PubMed id 11891284)1, 3 Kitareewan S....Dmitrovsky E. (2002)
- Involvement of UBE1L in ISG15 conjugation during retinoid-induced differentiation of acute promyelocytic leukemia. (PubMed id 14976209)1, 3 Pitha-Rowe I....Dmitrovsky E. (2004)
- UBE1L causes lung cancer growth suppression by targeting cyclin D1. (PubMed id 19074853)1, 3 Feng Q....Dmitrovsky E. (2008)
- The basis for selective E1-E2 interactions in the ISG15 conjugation system. (PubMed id 18583345)1, 3 Durfee L.A....Huibregtse J.M. (2008)
- The ubiquitin-activating enzyme E1-like protein in lung cancer cell lines. (PubMed id 10709110)1, 3 McLaughlin P.M....Buys C.H. (2000)
|
Search for UBA7
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing UBA7
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing UBA7
(According to HUGE)
About This Section
| -- |
Specialized Databases showing UBA7(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for UBA7(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for UBA7:

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Incremental update: 13 Oct 2009
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