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Aliases for UBA6-AS1 Gene

Subcategory (RNA class) for UBA6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UBA6-AS1 Gene

  • UBA6 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for UBA6-AS1 Gene

Previous GeneCards Identifiers for UBA6-AS1 Gene

  • GC04P068568

Summaries for UBA6-AS1 Gene

GeneCards Summary for UBA6-AS1 Gene

UBA6-AS1 (UBA6 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UBA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBA6-AS1 Gene

Genomics for UBA6-AS1 Gene

Regulatory Elements for UBA6-AS1 Gene

Enhancers for UBA6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H067697 1.6 Ensembl ENCODE dbSUPER 21.9 -1.1 -1090 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YBX1 YY1 ZNF766 ZNF143 UBA6 CENPC UBA6-AS1 YTHDC1 ENSG00000270257 STAP1 TMPRSS11D GC04P067653
GH04H067720 1.5 Ensembl ENCODE dbSUPER 21.9 +20.4 20356 2 PKNOX1 ATF1 ARNT YY1 TCF12 ZNF766 GATA2 ELK1 FOS ATF7 UBA6 CENPC YTHDC1 UBA6-AS1 ENSG00000270257 GNRHR LOC100419862 PIR51733
GH04H067712 1.4 Ensembl ENCODE dbSUPER 21.9 +12.8 12794 2 HDAC1 PKNOX1 ATF1 THRB TCF12 GATA2 ATF7 CREM SMARCA5 ELF1 UBA6 UBA6-AS1 GNRHR STAP1 ST3GAL1P1 GC04M067708
GH04H067680 0.6 ENCODE 21.6 -19.8 -19794 2 SOX13 GATAD2A FOXA2 FOXA3 CEBPG HMG20A ZNF644 CEBPA UBA6 UBA6-AS1 STAP1 UGT2B15 GC04P067653
GH04H067724 0.4 ENCODE 18.8 +22.9 22880 0 CTCF UBA6-AS1 GNRHR LOC100419862 PIR51733
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for UBA6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000168889 -178 2201 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 YBX1 YY1 ZNF766

Genomic Location for UBA6-AS1 Gene

Chromosome:
4
Start:
67,701,278 bp from pter
End:
68,080,952 bp from pter
Size:
379,675 bases
Orientation:
Plus strand

Genomic View for UBA6-AS1 Gene

Genes around UBA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBA6-AS1 Gene

Proteins for UBA6-AS1 Gene

Post-translational modifications for UBA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBA6-AS1 Gene

Domains & Families for UBA6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBA6-AS1 Gene

Function for UBA6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBA6-AS1 Gene

Localization for UBA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UBA6-AS1 Gene

Pathways & Interactions for UBA6-AS1 Gene

SuperPathways for UBA6-AS1 Gene

No Data Available

Interacting Proteins for UBA6-AS1 Gene

Gene Ontology (GO) - Biological Process for UBA6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBA6-AS1 Gene

Drugs & Compounds for UBA6-AS1 Gene

No Compound Related Data Available

Transcripts for UBA6-AS1 Gene

mRNA/cDNA for UBA6-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UBA6-AS1 Gene

No ASD Table

Relevant External Links for UBA6-AS1 Gene

GeneLoc Exon Structure for
UBA6-AS1
ECgene alternative splicing isoforms for
UBA6-AS1

Expression for UBA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBA6-AS1 Gene

genes like me logo Genes that share expression patterns with UBA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBA6-AS1 Gene

Orthologs for UBA6-AS1 Gene

Evolution for UBA6-AS1 Gene

ENSEMBL:
Gene Tree for UBA6-AS1 (if available)
TreeFam:
Gene Tree for UBA6-AS1 (if available)

No data available for Orthologs for UBA6-AS1 Gene

Paralogs for UBA6-AS1 Gene

No data available for Paralogs for UBA6-AS1 Gene

Variants for UBA6-AS1 Gene

Sequence variations from dbSNP and Humsavar for UBA6-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000060836 -- 67,712,383(+) CTTTT(A/G)GTTTC intron-variant
rs1000082563 -- 67,711,942(+) ATTCA(A/G)TGCTC intron-variant
rs1000255205 -- 67,703,885(+) ATGAG(A/C)ACTCC intron-variant
rs1000378575 -- 67,709,796(+) TAACC(-/AAACCAT)ATCAT intron-variant
rs1000430992 -- 67,710,190(+) GAGAC(C/G)AAGGT intron-variant

Relevant External Links for UBA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBA6-AS1 Gene

Disorders for UBA6-AS1 Gene

Relevant External Links for UBA6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBA6-AS1

No disorders were found for UBA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBA6-AS1 Gene

Publications for UBA6-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for UBA6-AS1 Gene

Sources for UBA6-AS1 Gene

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