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Aliases for UBA52P6 Gene

Aliases for UBA52P6 Gene

  • Ubiquitin A-52 Residue Ribosomal Protein Fusion Product 1 Pseudogene 6 2 3 5
  • Ribosomal Protein L40 Pseudogene 3
  • RPL40_3_969 3

External Ids for UBA52P6 Gene

Previous GeneCards Identifiers for UBA52P6 Gene

  • GC09P022007
  • GC09P022008
  • GC09P021975

Summaries for UBA52P6 Gene

GeneCards Summary for UBA52P6 Gene

UBA52P6 (Ubiquitin A-52 Residue Ribosomal Protein Fusion Product 1 Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBA52P6 Gene

Genomics for UBA52P6 Gene

Regulatory Elements for UBA52P6 Gene

Enhancers for UBA52P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G021809 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -199.9 -199856 4.8 PKNOX1 FOXA2 WRNIP1 ARID4B SIN3A ZNF2 YY1 GATA2 ZNF143 FOS MTAP CDKN2A CDKN2B-AS1 CDKN2A-AS1 CDKN2B UBA52P6 PIR60166 TUBB8P1
GH09G021986 1.3 Ensembl ENCODE dbSUPER 12.6 -24.2 -24246 2.6 TBP PKNOX1 ZSCAN4 NFRKB RFX5 YY1 ZSCAN5C MAFK ZBTB20 EZH2 CDKN2B CDKN2A-AS1 UBA52P6 CDKN2B-AS1 GC09M021977 PIR47863
GH09G021989 1.3 Ensembl ENCODE dbSUPER 12.6 -21.8 -21769 1.2 ZNF335 GLIS2 ZNF366 ZSCAN5C EGR2 ZNF263 ZNF202 ZNF398 ZNF623 PRDM6 CDKN2A-AS1 UBA52P6 CDKN2B CDKN2B-AS1 GC09M021977 PIR47863
GH09G022237 1.5 FANTOM5 Ensembl ENCODE 10.8 +227.4 227392 4.2 PKNOX1 FEZF1 ZNF2 GATA2 CBX5 FOS JUNB TSHZ1 TBX21 GLIS1 UBA52P6 CDKN2B DMRTA1 ENSG00000236921 GC09M022287
GH09G022156 1.5 Ensembl ENCODE dbSUPER 10.2 +146.6 146585 4.1 FOXA2 MLX ARID4B SIN3A YY1 GATA2 FOS MXD4 ZNF488 PPARG UBA52P6 CDKN2B ENSG00000277653 GC09M022195
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UBA52P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for UBA52P6 Gene

Chromosome:
9
Start:
22,011,950 bp from pter
End:
22,012,538 bp from pter
Size:
589 bases
Orientation:
Plus strand

Genomic View for UBA52P6 Gene

Genes around UBA52P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UBA52P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UBA52P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBA52P6 Gene

Proteins for UBA52P6 Gene

Post-translational modifications for UBA52P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UBA52P6 Gene

Domains & Families for UBA52P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UBA52P6 Gene

Function for UBA52P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UBA52P6 Gene

Localization for UBA52P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for UBA52P6 Gene

Pathways & Interactions for UBA52P6 Gene

SuperPathways for UBA52P6 Gene

No Data Available

Interacting Proteins for UBA52P6 Gene

Gene Ontology (GO) - Biological Process for UBA52P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UBA52P6 Gene

Drugs & Compounds for UBA52P6 Gene

No Compound Related Data Available

Transcripts for UBA52P6 Gene

mRNA/cDNA for UBA52P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for UBA52P6 Gene

No ASD Table

Relevant External Links for UBA52P6 Gene

GeneLoc Exon Structure for
UBA52P6
ECgene alternative splicing isoforms for
UBA52P6

Expression for UBA52P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UBA52P6 Gene

mRNA differential expression in normal tissues according to GTEx for UBA52P6 Gene

This gene is overexpressed in Testis (x18.2).

NURSA nuclear receptor signaling pathways regulating expression of UBA52P6 Gene:

UBA52P6
genes like me logo Genes that share expression patterns with UBA52P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UBA52P6 Gene

Orthologs for UBA52P6 Gene

Evolution for UBA52P6 Gene

ENSEMBL:
Gene Tree for UBA52P6 (if available)
TreeFam:
Gene Tree for UBA52P6 (if available)

No data available for Orthologs for UBA52P6 Gene

Paralogs for UBA52P6 Gene

No data available for Paralogs for UBA52P6 Gene

Variants for UBA52P6 Gene

Relevant External Links for UBA52P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UBA52P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UBA52P6 Gene

Disorders for UBA52P6 Gene

Relevant External Links for UBA52P6

Genetic Association Database (GAD)
UBA52P6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UBA52P6

No disorders were found for UBA52P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UBA52P6 Gene

Publications for UBA52P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. 1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data. (PMID: 22293688) Huang J. … Li Y. (Eur. J. Hum. Genet. 2012) 46 64
  3. Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas. (PMID: 21573907) Parra E.J. … Cruz M. (Diabetologia 2011) 46 64
  4. A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease. (PMID: 21606135) Wild P.S. … Blankenberg S. (Circ Cardiovasc Genet 2011) 46 64
  5. Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction. (PMID: 22144573) O'Donnell C.J. … Witteman J.C. (Circulation 2011) 46 64

Products for UBA52P6 Gene

Sources for UBA52P6 Gene

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