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Aliases & Descriptions for UBA52
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CEP52 1 , 2 , 3 HUBCEP52 1 , 2 MGC126879 1 , 2 MGC126881 1 , 2 MGC57125 1 , 2 RPL40 1 , 2 UBA80 3 UBCEP1 3 UBCEP2 3 ubiquitin-CEP52 2
Descriptions 60S ribosomal protein L40 2 ribosomal protein L40 2 ubiquitin A-52 residue ribosomal protein fusion product 1 2 ubiquitin and ribosomal protein L40 2 ubiquitin carboxyl extension protein 52 2 ubiquitin-52 amino acid fusion protein 2
Search outside databases for aliases for UBA52 genePrevious GC identifers: GC19P019176 GC19P019074 GC19P018527 GC19P018545 GC19P018546
Summaries for UBA52 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBA52 : Ubiquitin is a highly conserved nuclear and cytoplasmic protein that has a major role in targetingcellular proteins for degradation by the 26S proteosome. It is also involved in the maintenance ofchromatin structure, the regulation of gene expression, and the stress response. Ubiquitin issynthesized as a precursor protein consisting of either polyubiquitin chains or a single ubiquitinmoiety fused to an unrelated protein. This gene encodes a fusion protein consisting of ubiquitinat the N terminus and ribosomal protein L40 at the C terminus, a C-terminal extension protein(CEP). Multiple processed pseudogenes derived from this gene are present in the genome. [providedby RefSeq] UniProtKB/Swiss-Prot: UBIQ_HUMAN, P62988 Function : Protein modifier which can be covalently attached to target lysines either as a monomeror as a lysine-linked polymer. Attachment to proteins as a Lys-48-linked polymer usually leads totheir degradation by proteasome. Attachment to proteins as a monomer or as an alternatively linkedpolymer does not lead to proteasomal degradation and may be required for numerous functions,including maintenance of chromatin structure, regulation of gene expression, stress response,ribosome biogenesis and DNA repair
Gene Wiki entry for UBA52 (Ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1)
Genomic Location for UBA52
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the UBA52 gene Entrez Gene cytogenetic band: 19p13.1-p12 Ensembl cytogenetic band: 19p13.11 HGNC cytogenetic band: 19p13.1-p12 UBA52 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P018548:
(about GC identifiers )
Start:
18,543,614 bp from pter
End:
18,549,270 bp from pter
Size:
5,657 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011295.10 Proteins for UBA52
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RL40_HUMAN, P62987 (See
protein sequence )Recommended Name: 60S ribosomal protein L40 Size : 52 amino acids; 6181 Da
Miscellaneous : This ribosomal protein is synthesized as a C-terminal extension protein (CEP) ofubiquitin
Secondary accessions : P14793 Q9BX98 Q9UPK7
UniProtKB/Swiss-Prot: UBIQ_HUMAN, P62988 (See
protein sequence )Recommended Name: Ubiquitin Size : 76 amino acids; 8565 Da
Subcellular location : Cytoplasm. Nucleus
Miscellaneous : Ubiquitin is synthesized as a polyubiquitin precursor with exact head to tailrepeats, the number of repeats differ between species and strains. In some species there is afinal amino-acid after the last repeat, here in human a Val. Some ubiquitin genes contain a singlecopy of ubiquitin fused to a ribosomal protein (either L40 or S27a)
PDB structures from and Proteopedia : 1C3T (3D)
 1CMX (3D)
 1D3Z (3D)
 1F9J (3D)
 1FXT (3D)
 1G6J (3D)
 1GJZ (3D)
 1NBF (3D)
 1OGW (3D)
 1Q5W (3D)
 1S1Q (3D)
 1SIF (3D)
 1TBE (3D)
 1UBI (3D)
 1UBQ (3D)
 1XD3 (3D)
 1XQQ (3D)
 1YX5 (3D)
 1YX6 (3D)
 1ZGU (3D)
 1ZO6 (3D)
 2AYO (3D)
 2BGF (3D)
 2DEN (3D)
 2FUH (3D)
 2G45 (3D)
 2GBJ (3D)
 2GBK (3D)
 2GBM (3D)
 2GBN (3D)
 2GBR (3D)
 2HTH (3D)
 2IBI (3D)
 2J7Q (3D)
 2JF5 (3D)
 2JRI (3D)
 2JY6 (3D)
 2JZZ (3D)
 2K25 (3D)
 2K6D (3D)
 2K8B (3D)
 2K8C (3D)
 2NR2 (3D)
 2O6V (3D)
 2OJR (3D)
 2PE9 (3D)
 2PEA (3D)
 2W9N (3D)
 2Z59 (3D)
 2ZCB (3D)
 2ZVN (3D)
 2ZVO (3D)
 3BY4 (3D)
 3C0R (3D)
 3DVG (3D)
 3DVN (3D)
 3EEC (3D)
 3EFU (3D)
 3EHV (3D)
 
Secondary accessions : P02248 P02249 P02250 Q29120 Q6LBL4 Q6LDU5 Q8WYN8 Q91887 Q91888 Q9BWD6 Q9BX98Q9UEF2 Q9UEG1 Q9UEK8 Q9UPK7
Post-translational modifications:
Several types of polymeric chains can be formed, depending on the lysine used for the assembly1
REFSEQ proteins (2 alternative transcripts):
NP_001029102.1 NP_003324.1 ENSEMBL proteins: ENSP00000386142 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: UBA52 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBA52: Assays for UBA52:
Protein
Domains/ Families for UBA52(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P62987 Graphical View of Domain Structure for InterPro Entry P62988 ProtoNet protein and cluster: P62987
UniProtKB/Swiss-Prot: RL40_HUMAN, P62987 Similarity : Belongs to the ribosomal protein L40e family
UniProtKB/Swiss-Prot: UBIQ_HUMAN, P62988 Similarity : Belongs to the ubiquitin family
Gene Function for UBA52
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
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Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001033930 Applied Biosystems Silencer ® siRNAs for UBA52 Sigma-Aldrich siRNA and siRNA Panels for UBA52 Sigma-Aldrich shRNA for UBA52 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001033930 UniProtKB/Swiss-Prot: UBIQ_HUMAN, P62988 Function : Protein modifier which can be covalently attached to target lysines either as a monomeror as a lysine-linked polymer. Attachment to proteins as a Lys-48-linked polymer usually leads totheir degradation by proteasome. Attachment to proteins as a monomer or as an alternatively linkedpolymer does not lead to proteasomal degradation and may be required for numerous functions,including maintenance of chromatin structure, regulation of gene expression, stress response,ribosome biogenesis and DNA repair
Genatlas biochemistry entry for UBA52 :ubiquitin-ribosomal protein fusion 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003735 structural constituent of ribosome
IEA --
About this table
Pathways & Interactions for UBA52
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/485 Interacting proteins for UBA52 (P62988 1 , 2 P62987 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 485
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for UBA52 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for UBA52
Transcripts for UBA52(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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ESTs according to GeneTide ,
exon structure from GeneLoc ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001033930 Sigma-Aldrich siRNA and siRNA Panels for UBA52 Sigma-Aldrich shRNA for UBA52 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001033930 NM_003333
REFSEQ mRNAs for UBA52 gene (2 alternative transcripts): NM_001033930.1 NM_003333.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001033930 NM_003333
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001033930  
Additional cDNA sequence: AF348700.1 AF545864.1 AK057790.1 AK314717.1 BC101830.1 BC101832.1 BC143668.1 CR604171.1 CR605557.1 CR624915.1 X56998.1 X56999.1 Y00361.1
24/54 DOTS entries (see all 54
): DT.100834067 DT.100701381 DT.91674003 DT.91770700 DT.91786700 DT.100045216 DT.100701383 DT.100701386 DT.95085246 DT.99955604 DT.453583 DT.95159168 DT.91770707 DT.95159231 DT.97775328 DT.401373 DT.121499143 DT.95211950 DT.100771856 DT.121499141 DT.121499113 DT.121499107 DT.95159124 DT.100701390
24/1424 AceView cDNA sequences (see all 1424
):H13978 BM852498 AA304272 AJ711859 F28571 BG105455 BU192119 BX438962 BQ674407 CB134727 BF971004 BE670402 CA946856 F23551 CB137602 CB124676 BM463452 AA331302 BQ677516 F29553 AA360211 AJ713557 F29931 F27349
highest scoring ESTs for UBA52 :AA244240 AA292179 AA311225 AA344926 AA457207 AA470556 AA480532 AA482878 AA488095 AA526839
Unigene Cluster for UBA52: Ubiquitin A-52 residue ribosomal protein fusion product 1 Hs.5308 [show with all ESTs ] Unigene Representative Sequence: NM_001033930 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000408928
Expression for UBA52
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBA52 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBA52 1 / 2 / 3
4 probe-sets matching UBA52 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGATCTTTGSOURCE GeneReport for Unigene cluster: Hs.5308
Orthologs for UBA52
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for UBA52 gene from 5/27 species (see all 27
)
About this table Species with no ortholog for UBA52 ENSEMBL Gene Tree for UBA52 Paralogs for UBA52 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBA52 gene UBB 2 ENSG00000189251 2 UBC 2
SNPs/Variants for UBA52 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBA52 (up to first 250kb)
Disorders & Mutations for UBA52
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 191321
Medical News for UBA52 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBA52 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/59 PubMed articles for UBA52 gene (see all 59
):
Search for UBA52
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing UBA52
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBA52
(According to HUGE )
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Specialized Databases showing UBA52 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for UBA52 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for UBA52:
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