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Aliases for UBA5 Gene

Aliases for UBA5 Gene

  • Ubiquitin-Like Modifier Activating Enzyme 5 2 3
  • Ubiquitin-Activating Enzyme E1 Domain-Containing Protein 1 3 4
  • Ubiquitin-Activating Enzyme E1-Domain Containing 1 2 3
  • Ubiquitin-Activating Enzyme 5 3 4
  • UFM1-Activating Enzyme 3 4
  • UBE1DC1 3 4
  • THIFP1 3 4
  • Ubiquitin-Activating Enzyme E1 Homolog (Yeast) 2
  • UBA5, Ubiquitin-Activating Enzyme E1 Homolog 3
  • Ubiquitin-Like Modifier-Activating Enzyme 5 3
  • UBE1DC1, 6
  • UBA5 2

External Ids for UBA5 Gene

Previous Symbols for UBA5 Gene

  • UBE1DC1

Summaries for UBA5 Gene

Entrez Gene Summary for UBA5 Gene

  • This gene encodes a member of the E1-like ubiquitin-activating enzyme family. This protein activates ubiquitin-fold modifier 1, a ubiquitin-like post-translational modifier protein, via the formation of a high-energy thioester bond. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. A pseudogene located on chromosome 1 has also been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for UBA5 Gene

UBA5 (Ubiquitin-Like Modifier Activating Enzyme 5) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and Remodeling of Adherens Junctions. GO annotations related to this gene include cofactor binding and UFM1 activating enzyme activity. An important paralog of this gene is MOCS3.

UniProtKB/Swiss-Prot for UBA5 Gene

  • E1-like enzyme which activates UFM1 and SUMO2.

Gene Wiki entry for UBA5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UBA5 Gene

Genomics for UBA5 Gene

Genomic Location for UBA5 Gene

Start:
132,654,446 bp from pter
End:
132,678,623 bp from pter
Size:
24,178 bases
Orientation:
Plus strand

Genomic View for UBA5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for UBA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UBA5 Gene

Regulatory Elements for UBA5 Gene

Proteins for UBA5 Gene

  • Protein details for UBA5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZZ9-UBA5_HUMAN
    Recommended name:
    Ubiquitin-like modifier-activating enzyme 5
    Protein Accession:
    Q9GZZ9
    Secondary Accessions:
    • A6NJL3
    • D3DNC8
    • Q96ST1

    Protein attributes for UBA5 Gene

    Size:
    404 amino acids
    Molecular mass:
    44863 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for UBA5 Gene

    Alternative splice isoforms for UBA5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for UBA5 Gene

Proteomics data for UBA5 Gene at MOPED

Post-translational modifications for UBA5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for UBA5 Gene

No data available for DME Specific Peptides for UBA5 Gene

Domains for UBA5 Gene

Gene Families for UBA5 Gene

HGNC:
  • UBE1 :Ubiquitin-like modifier activating enzymes

Suggested Antigen Peptide Sequences for UBA5 Gene

Graphical View of Domain Structure for InterPro Entry

Q9GZZ9

UniProtKB/Swiss-Prot:

UBA5_HUMAN
Family:
  • Belongs to the ubiquitin-activating E1 family. UBA5 subfamily.:
    • Q9GZZ9
genes like me logo Genes that share domains with UBA5: view

Function for UBA5 Gene

Molecular function for UBA5 Gene

UniProtKB/Swiss-Prot Function: E1-like enzyme which activates UFM1 and SUMO2.

Gene Ontology (GO) - Molecular Function for UBA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity --
GO:0005515 protein binding IPI 16189514
GO:0005524 ATP binding IEA --
GO:0046872 metal ion binding IEA --
GO:0071566 UFM1 activating enzyme activity IDA 15071506
genes like me logo Genes that share ontologies with UBA5: view

Phenotypes for UBA5 Gene

MGI mutant phenotypes for UBA5:
inferred from 1 alleles
GenomeRNAi human phenotypes for UBA5:
genes like me logo Genes that share phenotypes with UBA5: view

Animal Models for UBA5 Gene

MGI Knock Outs for UBA5:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for UBA5 Gene

Localization for UBA5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for UBA5 Gene

Cytoplasm. Nucleus. Note=Localizes mainly in cytoplasm, while it mainly localizes to the nucleus in presence of SUMO2.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for UBA5 Gene COMPARTMENTS Subcellular localization image for UBA5 gene
Compartment Confidence
nucleus 5
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for UBA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol IBA --
GO:0043231 intracellular membrane-bounded organelle IDA --
genes like me logo Genes that share ontologies with UBA5: view

Pathways for UBA5 Gene

genes like me logo Genes that share pathways with UBA5: view

Gene Ontology (GO) - Biological Process for UBA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
GO:0033146 regulation of intracellular estrogen receptor signaling pathway IMP 25219498
GO:0034976 response to endoplasmic reticulum stress IDA 23152784
GO:0071569 protein ufmylation IMP 23152784
GO:1990564 protein polyufmylation IDA 25219498
genes like me logo Genes that share ontologies with UBA5: view

Transcripts for UBA5 Gene

Unigene Clusters for UBA5 Gene

Ubiquitin-like modifier activating enzyme 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for UBA5 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13
SP1: - - -
SP2: - - -
SP3: -
SP4: -
SP5:
SP6: - - - - -
SP7:

Relevant External Links for UBA5 Gene

GeneLoc Exon Structure for
UBA5
ECgene alternative splicing isoforms for
UBA5

Expression for UBA5 Gene

mRNA expression in normal human tissues for UBA5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for UBA5 Gene

SOURCE GeneReport for Unigene cluster for UBA5 Gene Hs.170737

mRNA Expression by UniProt/SwissProt for UBA5 Gene

Q9GZZ9-UBA5_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expressions with UBA5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for UBA5 Gene

Orthologs for UBA5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for UBA5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UBA5 35
  • 99.34 (n)
  • 99.5 (a)
UBA5 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia UBA5 35
  • 92.99 (n)
  • 94.55 (a)
UBA5 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia UBA5 35
  • 93.32 (n)
  • 96.04 (a)
UBA5 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Uba5 35
  • 85.49 (n)
  • 88.31 (a)
Uba5 16
Uba5 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia UBA5 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 78 (a)
OneToMany
-- 36
  • 89 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Uba5 35
  • 86.07 (n)
  • 88.56 (a)
chicken
(Gallus gallus)
Aves UBA5 35
  • 79.51 (n)
  • 85.39 (a)
UBA5 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia UBA5 36
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.11058 35
uba5 35
  • 74.71 (n)
  • 80.9 (a)
zebrafish
(Danio rerio)
Actinopterygii -- 35
uba5 35
  • 70.45 (n)
  • 81.06 (a)
uba5 36
  • 79 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009012 35
  • 61.67 (n)
  • 68.12 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG1749 35
  • 63.35 (n)
  • 67.6 (a)
CG1749 36
  • 64 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T03F1.1 35
  • 64.45 (n)
  • 73.08 (a)
uba-5 36
  • 57 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes UBA4 36
  • 17 (a)
OneToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.8934 35
soybean
(Glycine max)
eudicotyledons Gma.6428 35
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G05350 35
  • 60.47 (n)
  • 61.75 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.8523 35
corn
(Zea mays)
Liliopsida Zm.4992 35
rice
(Oryza sativa)
Liliopsida Os.10838 35
Os02g0506500 35
  • 65.72 (n)
  • 70.82 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.12503 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14028 35
Species with no ortholog for UBA5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for UBA5 Gene

ENSEMBL:
Gene Tree for UBA5 (if available)
TreeFam:
Gene Tree for UBA5 (if available)

Paralogs for UBA5 Gene

Paralogs for UBA5 Gene

Pseudogenes.org Pseudogenes for UBA5 Gene

genes like me logo Genes that share paralogs with UBA5: view

Variants for UBA5 Gene

Structural Variations from Database of Genomic Variants (DGV) for UBA5 Gene

Variant ID Type Subtype PubMed ID
nsv4014 CNV Insertion 18451855

Relevant External Links for UBA5 Gene

HapMap Linkage Disequilibrium report
UBA5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for UBA5 Gene

Disorders for UBA5 Gene

Relevant External Links for UBA5

Genetic Association Database (GAD)
UBA5
genes like me logo Genes that share disorders with UBA5: view

No data available for UniProtKB/Swiss-Prot for UBA5 Gene

Publications for UBA5 Gene

  1. Isolation and characterization of ubiquitin-activating enzyme E1- domain containing 1, UBE1DC1. (PMID: 16328888) Dou T. … Mao Y. (Mol. Biol. Rep. 2005) 3 4 23
  2. A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier. (PMID: 15071506) Komatsu M. … Tanaka K. (EMBO J. 2004) 2 3 4
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for UBA5 Gene

  • Addgene plasmids for UBA5

Sources for UBA5 Gene

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