UBA3 Gene
protein-coding GIFtS : 54
GC03M069187
ubiquitin-like modifier activating enzyme 3 (Previous names: ubiquitin-activating enzyme E1C (homologous to yeast UBA3), ubiquitin-activating enzyme E1C (UBA3 homolog, yeast) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: UBE1C )
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Aliases & Descriptions for UBA3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp566J164 2 EC 6.3.2.- 3 MGC22384 2 UBE1C 2 , 3 hUBA3 2 hUba3 1
Descriptions NEDD8-activating enzyme E1C 3 Nedd8-activating enzyme hUba3 2 UBA3, ubiquitin-activating enzyme E1 homolog 2 Ubiquitin-activating enzyme 3 2 , 3 Ubiquitin-activating enzyme E1C 3 Ubiquitin-like modifier-activating enzyme 3 3 ubiquitin-activating enzyme E1C (UBA3 homolog, yeast) 1 , 2 ubiquitin-activating enzyme E1C (homologous to yeast UBA3) 1 , 2 ubiquitin-like modifier activating enzyme 3 2
Search outside databases for aliases for UBA3 gene
Summaries for UBA3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for UBA3 : The modification of proteins with ubiquitin is an important cellular mechanism for targetingabnormal or short-lived proteins for degradation. Ubiquitination involves at least three classesof enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, andubiquitin-protein ligases, or E3s. This gene encodes a member of the E1 ubiquitin-activatingenzyme family. The encoded enzyme associates with AppBp1, an amyloid beta precursor proteinbinding protein, to form a heterodimer, and then the enzyme complex activates NEDD8, aubiquitin-like protein, which regulates cell division, signaling and embryogenesis. Multiplealternatively spliced transcript variants encoding distinct isoforms have been found for thisgene. [provided by RefSeq] UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 Function : Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by firstadenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the sidechain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finallytransfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity.Necessary for cell cycle progression
Gene Wiki entry for UBA3 (UBE1C)
Genomic Location for UBA3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3p24.3-p13 Ensembl cytogenetic band: 3p14.1 HGNC cytogenetic band: 3p24.3-p13 UBA3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M069187:
(about GC identifiers )
Start:
69,186,571 bp from pter
End:
69,212,214 bp from pter
Size:
25,644 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.10 NT_022459.14 Proteins for UBA3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 (See
protein sequence )Recommended Name: NEDD8-activating enzyme E1 catalytic subunit Size : 463 amino acids; 51852 Da
Subunit : Heterodimer of UBA3 and NAE1. Interacts with NEDD8, UBE2F and UBE2M. Binds ESR1 and ESR2with bound steroid ligand (By similarity)
Miscellaneous : Arg-211 acts as a selectivity gate, preventing misactivation of ubiquitin by thisNEDD8-specific E1 complex
PDB structures from and Proteopedia : 1R4M (3D)
 1R4N (3D)
 1TT5 (3D)
 1Y8X (3D)
 1YOV (3D)
 2NVU (3D)
 3DBH (3D)
 3DBL (3D)
 3DBR (3D)
 3FN1 (3D)
 
Secondary accessions : O76088 Q9NTU3
REFSEQ proteins (2 alternative transcripts):
NP_003959.3 NP_937838.1 ENSEMBL proteins: ENSP00000354340 ENSP00000340041 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): UBA3 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for UBA3: Assays for UBA3:
Protein
Domains/ Families for UBA3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q8TBC4 ProtoNet protein and cluster: Q8TBC4
1 Blocks protein family : IPB000594 UBA/THIF-type NAD/FAD binding fold UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 Similarity : Belongs to the ubiquitin-activating E1 family. UBA3 subfamily
Gene Function for UBA3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003968 Applied Biosystems Silencer ® siRNAs for UBA3 Sigma-Aldrich siRNA and siRNA Panels for UBA3 Sigma-Aldrich shRNA Panels and shRNA for UBA3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003968                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003968                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003968  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003968 UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 Function : Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by firstadenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the sidechain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finallytransfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity.Necessary for cell cycle progression Enzyme regulation : Binding of TP53BP2 to the regulatory subunit NAE1 decreases activityEnzyme Number (IUBMB): EC 6.3.2.-
3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Uba3) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for UBA3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 Pathway : Protein modification; protein neddylation
Gene Network CentralTM Interacting Genes and Proteins Network for UBA3 5/18 Interacting proteins for UBA3 (Q8TBC4 1 , 2 ENSP00000354340 3 ) via UniProtKB, MINT, and/or STRING (see all 18
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for UBA3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for UBA3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003968 Sigma-Aldrich siRNA and siRNA Panels for UBA3 Sigma-Aldrich shRNA Panels and shRNA for UBA3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003968 NM_198195
REFSEQ mRNAs for UBA3 gene (2 alternative transcripts): NM_003968.3 NM_198195.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003968 NM_198195
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003968                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003968                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003968  
Additional cDNA sequence: AB012190.1 AF046024.1 AK002159.1 AK289392.1 AK298878.1 AK314751.1 AK316540.1 AL117566.1 BC022853.1 CR533537.1 CR598743.1 CR606720.1
24/32 DOTS entries (see all 32
): DT.100824573 DT.95349004 DT.100824571 DT.452636 DT.120881860 DT.100673627 DT.120881849 DT.101984597 DT.120881856 DT.100824575 DT.99999886 DT.100674495 DT.100008710 DT.100036654 DT.120881863 DT.91759473 DT.91759480 DT.92001678 DT.100036656 DT.100824561 DT.100824563 DT.100824567 DT.120881875 DT.120881889
24/337 AceView cDNA sequences (see all 337
):BX327547 AI248702 BM725067 AW293986 BQ001860 CA419569 AA620323 AI628586 BU681516 AW132016 BM769632 BM830019 AW517668 CD514124 BU150219 CA445731 BE439902 CA776226 AA045168 CA406242 BU153416 AK002159 CN483729 AW467017
Unigene Cluster for UBA3: Ubiquitin-like modifier activating enzyme 3 Hs.154320 [show with all ESTs ] Unigene Representative Sequence: NM_003968 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for UBA3 (see all 12
) ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^ 18 SP1 :             -                             -           SP2 :             -                                       SP3 :             -             -                           SP4 :             -                                       SP5 :   -           -                                      
About this scheme ECgene alternative splicing isoforms for UBA3 2 Ensembl transcripts including schematic representations : ENST00000361055
ENST00000349511
Expression for UBA3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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UBA3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for UBA3 1 / 2
3 probe-sets matching UBA3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCTGTTTAAASOURCE GeneReport for Unigene cluster: Hs.154320 UniProtKB/Swiss-Prot: UBA3_HUMAN, Q8TBC4 Tissue specificity : Ubiquitously expressed
Orthologs for UBA3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for UBA3 gene from 5/23 species (see all 23
)
About this table Species with no ortholog for UBA3 ENSEMBL Gene Tree for UBA3 Paralogs for UBA3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for UBA3 gene UBA2 2
SNPs/Variants for UBA3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for UBA3 (up to first 250kb)
Disorders & Mutations for UBA3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603172
Medical News for UBA3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for UBA3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/26 PubMed articles for UBA3 gene (see all 26
): A new NEDD8-ligating system for cullin-4A. (PubMed id 9694792) 2, 3, 4 Osaka F.... Kato S. (1998) Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. (PubMed id 15694336) 3, 4 Huang D.T....Schulman B.A. (2005) A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. (PubMed id 15361859) 3, 4 Huang D.T.... Schulman B.A. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Conservation in the mechanism of Nedd8 activation by the human AppBp1-Uba3 heterodimer. (PubMed id 12740388) 3, 4 Bohnsack R.N. and Haas A.L. (2003) Insights into the ubiquitin transfer cascade from the structure of the activating enzyme for NEDD8. (PubMed id 12646924) 3, 4 Walden H.... Schulman B.A. (2003) The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. (PubMed id 14690597) 3, 4 Walden H.... Schulman B.A. (2003) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 3, 4 Wiemann S.... Poustka A. (2001) Identification of the activating and conjugating enzymes of the NEDD8 conjugation pathway. (PubMed id 10207026) 3, 4 Gong L. and Yeh E.T.H. (1999) E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification. (PubMed id 19250909) 4 Huang D.T....Schulman B.A. (2009)
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Genome Databases showing UBA3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing UBA3
(According to HUGE )
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Specialized Databases showing UBA3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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