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U2AF2 Gene

protein-coding   GIFtS: 53

GC19P060858
U2 small nuclear RNA auxiliary factor 2
(Previous name: U2 (RNU2) small nuclear RNA auxiliary factor 2 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
U2AF65 1, 2, 3
hU2AF(65) 3
hU2AF65 3
Descriptions
U2 (RNU2) small nuclear RNA auxiliary factor 2 1, 2
U2 auxiliary factor 65 kDa subunit 3
U2 small nuclear RNA auxiliary factor 2 2
U2 small nuclear ribonucleoprotein auxiliary factor (65kD) 2
U2 snRNP auxiliary factor large subunit 2, 3
splicing factor U2AF 65 kD subunit 2
External Ids
HGNC: 231561
Entrez Gene: 113382
UniProtKB: P263683
Ensembl: ENSG000000632447
Search outside databases for aliases for U2AF2 gene

Previous GC identifer: GC19P060857

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for U2AF2:
U2 auxiliary factor (U2AF), comprised of a large and a small subunit, is a non-snRNP protein
required for the binding of U2 snRNP to the pre-mRNA branch site. This gene encodes the U2AF large
subunit which contains a sequence-specific RNA-binding region with 3 RNA recognition motifs and an
Arg/Ser-rich domain necessary for splicing. The large subunit binds to the polypyrimidine tract of
introns early during spliceosome assembly. Multiple transcript variants have been detected for
this gene, but the full-length natures of only two have been determined to date. [provided by
RefSeq]

UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368
Function: Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of introns
early during spliceosome assembly. Required for the export of mRNA out of the nucleus, even if the
mRNA is encoded by an intron-less gene

Gene Wiki entry for U2AF2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the U2AF2 gene  

Entrez Gene cytogenetic band: 19q13.42   Ensembl cytogenetic band:  19q13.42   HGNC cytogenetic band: 19q13.43

U2AF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P060858:     (about GC identifiers)

Start:
60,857,228 bp from pter
End:
60,877,894 bp from pter
Size:
20,667 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000019.8  NT_011109.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368 (See protein sequence)
Recommended Name: Splicing factor U2AF 65 kDa subunit  
Size: 475 amino acids; 53501 Da
Subunit: Interacts with U2AF1L4 (By similarity). Heterodimer with U2AF1. Binds unphosphorylated
SF1. Interacts with SFRS2IP
Subcellular location: Nucleus
PDB structures from and Proteopedia :
1JMT (3D)    1O0P (3D)    1OPI (3D)    1U2F (3D)    2G4B (3D)    2HZC (3D)    2U2F (3D)    
Secondary accessions: Q96HC5
Alternative splicing: 2 isoforms:  P26368-1   P26368-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_001012496.1  NP_009210.1  


    ENSEMBL proteins: 
    ENSP00000307863 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (U2AF65)
    Human Recombinant Proteins from Abnova (U2AF2)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    GO:0005681 spliceosome IDA9731529
    About this table

    Antibodies for U2AF2: 
    Invitrogen Antibodies for U2AF2
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibody Arrays and Antibodies for U2AF2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (U2AF65), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for U2AF2

    Assays for U2AF2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR012677 a_b_plait_nuc_bd
     IPR006529 U2AF_lg
     IPR000504 RRM_RNP1


       GeneDecks  U2AF2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P26368

    ProtoNet protein and cluster: P26368

    1 Blocks protein family: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

    UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368
    Similarity: Belongs to the splicing factor SR family
    Similarity: Contains 3 RRM (RNA recognition motif) domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (U2AF2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (U2AF2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001012478

                  Applied Biosystems Silencer® siRNAs for U2AF2

                  Sigma-Aldrich siRNA for U2AF2  
                         Sigma-Aldrich shRNA for U2AF2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001012478
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001012478
                                     untagged cDNA clones in CMV expression vector (see all 3): BC008740 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_007279

    UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368
    Function: Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of introns
    early during spliceosome assembly. Required for the export of mRNA out of the nucleus, even if the
    mRNA is encoded by an intron-less gene

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0003723 RNA binding IEA--
    GO:0005515 protein binding IPI9447963
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  U2AF2 


    5/9 Interacting proteins for U2AF2 (P263681, 2) via UniProtKB, MINT, and/or STRING (see all 9 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATXN1P542531, 2EBI-742339, EBI-930964 MINT-2869849 MINT-2869830 MINT-2855372 EBI-742339, EBI-930964 MINT-2869849 MINT-2869830 MINT-2855372
    PUF60Q9UHX11EBI-742339, EBI-1053259
    RNPS1Q152871EBI-742339, EBI-395959
    U2AF1Q010811EBI-742339, EBI-632461
    ATXN1P542531, 2EBI-742339, EBI-930964 MINT-2869849 MINT-2869830 MINT-2855372 EBI-742339, EBI-930964 MINT-2869849 MINT-2869830 MINT-2855372
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000398 nuclear mRNA splicing, via spliceosome IC9731529
    GO:0008380 RNA splicing IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for U2AF2
    4 Novoseek chemical compound relationships for U2AF2 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    poly u 56.93 3 17188295 (1), 8990179 (1)
    pyrimidine 22.61 2 16809543 (2)
    atp 1.04 2 1398075 (1), 16376933 (1)
    zinc 0.00 1 10606272 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (U2AF2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (U2AF2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001012478

                  Sigma-Aldrich siRNA for U2AF2  
                         Sigma-Aldrich shRNA for U2AF2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001012478  NM_007279  

    REFSEQ mRNAs for U2AF2 gene (2 alternative transcripts): 

    NM_001012478.1   NM_007279.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001012478  NM_007279  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001012478
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001012478
                                     untagged cDNA clones in CMV expression vector (see all 3): BC008740 

    Additional cDNA sequence: 

    AB451261.1 AB451387.1 AK311672.1 BC008740.2 BC030574.2 CR609498.1 X64044.1 

    19 DOTS entries:

    DT.316064  DT.102824787  DT.100787781  DT.121432600  DT.86847492  DT.97858884  DT.100015615  DT.100036921 
    DT.102824788  DT.121432571  DT.121432611  DT.99985196  DT.100036922  DT.121432584  DT.92438055  DT.95071809 
    DT.121432551  DT.92061826  DT.95130294 

    24/266 AceView cDNA sequences (see all 266 ):

    BX461321 AI056452 BF115888 BE857957 BM768292 BE646566 BC008740 AI915105 
    AI161317 AA404408 BM720557 AA640188 BF063339 AI743821 BE466369 BE466493 
    BG333194 BF732390 AI127369 AI762438 AI807465 BC030574 AA620672 AI082328 

    highest scoring ESTs for U2AF2:

    X64044 AA226292 AA228879 AA309119 AA368773 AA417934 AA418112 AA468878 AA505414 AA640188 

    Unigene Cluster for U2AF2:

    U2 small nuclear RNA auxiliary factor 2
    Hs.528007  [show with all ESTs]
    Unigene Representative Sequence: NM_007279


    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for U2AF2

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b
    SP1:                                                                    -                     
    SP2:                                                                                          

    About this scheme

    ECgene alternative splicing isoforms for U2AF2

    1 Ensembl transcript including schematic representation:
    ENST00000308924  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    U2AF2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for U2AF2

    1 / 2 / 3

    9 probe-sets matching U2AF2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    77029_at2, 3 U95-E 1 1.00 1.00 0.41 0.21 AW007068 0.80 1.00 0.91 1
    32556_at2, 3 U95-A 1 1.00 1.00 0.91 0.76 X64044 1.00 1.00 1.00 1

    54740_at2, 3 U95-B 1 0.81 1.00 0.91 1.24 AI590777 0.80 1.00 0.91 1

    218381_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_007279 0.60 1.00 0.82 1

    218382_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_007279 0.60 1.00 0.82 1

    229508_at2, 3 U133-B 1 1.00 1.00 -- -- BF434828 0.60 1.00 0.82 1

    218381_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    218382_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    229508_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  U2AF2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CAGGGCCTGA

    SOURCE GeneReport for Unigene cluster: Hs.528007

    Expression variation in blood from EXPOLDB for U2AF2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for U2AF2 gene from 5/18 species (see all 18 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    cow
    (Bos taurus)
    U2AF21   -- U2 small nuclear RNA auxiliary factor 2 93.56(n)
    99.79(a)
    507895  NM_001075336.1  NP_001068804.1 
    rat
    (Rattus norvegicus)
    LOC6903721   -- similar to U2 (RNU2) small nuclear RNA auxiliary factor more 91.79(n)
    100(a)
    690372  XM_218195.4  XP_218195.3 
    mouse
    (Mus musculus)
    U2af25 7 U2 small nuclear ribonucleoprotein auxiliary factor more   -- X64587 
    zebrafish
    (Danio rerio)
    wufb73g022   -- wufb73g02 78.86(n) 322805  CF347908.1 
    fruit fly
    (Drosophila melanogaster)
    U2af501   -- U2 small nuclear riboprotein auxiliary factor 50 67.49(n)
    74.26(a)
    32602  NM_057543.3  NP_476891.1 
    About this table        Species with no ortholog for U2AF2

    ENSEMBL Gene Tree for U2AF2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for U2AF2 gene
    RBM232  RBM392  PUF602  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/98 NCBI SNPs in U2AF2 are shown (see all 98 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 68)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 19 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs5048501,2
    A,C,F,H60857287(-) AAGCCA/GCGGGT 2 -- ut51 ese39Minor allele frequency- G:0.48MN EU EA WA 1016
    rs5040031,2
    A,C,F,H60857356(-) GAGGGG/ATGAAG 2 -- ut51 ese34Minor allele frequency- A:0.02MN EU EA 482
    rs22802551,2
    C60857733(-) CGGCTC/TTTTCC 2 -- ut51 ese30--------
    rs6170731,2
    A,C,F,H60872780(-) CGCACA/GTCCTC 2 D/D syn18Minor allele frequency- G:0.28EU EA WA 830
    rs3104411,2
    A,C,F,H,O60867327(-) GAATAA/CCCAGG 2 -- int17Minor allele frequency- C:0.27EU EA WA NA 562
    rs3104451,2
    A,C,F,H,O60865363(-) CAGAGA/GGCATG 2 -- int111Minor allele frequency- G:0.16EU EA WA NA 980
    rs3104371,2
    A,C,F,H,O60869508(-) CTGCAA/GCGGCT 2 -- int111Minor allele frequency- G:0.28EU EA WA NA 982
    rs3104421,2
    A,C,F,H,O60867226(-) CGCAAA/CGCAGG 2 -- int18Minor allele frequency- C:0.06MN EU EA WA NA 744
    rs3104431,2
    A,C,F,H60867057(-) TAGGGT/GAAGCA 2 -- int14Minor allele frequency- G:0.01EU EA WA 418
    rs104204011,2
    A,C,F,H60865324(+) CTCTTG/CTGTTT 2 -- int18Minor allele frequency- C:0.12EU EA WA NA 636
    About this table

    HapMap Linkage Disequilibrium images for U2AF2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 191318

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/119 PubMed articles for U2AF2 gene (see all 119 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 11338 HGNC: 23156 AceView: U2AF2 Ensembl:ENSG00000063244 euGenes: HUgn11338
    ECgene: U2AF2 H-InvDB: U2AF2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for U2AF2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
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      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for U2AF2-related products

     Millipore Custom Antibody & Bulk Services
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     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for U2AF2 Antibodies for U2AF2
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
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