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Aliases & Descriptions for U2AF2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases U2AF65 1 , 2 , 3 hU2AF(65) 3 hU2AF65 3
Descriptions U2 (RNU2) small nuclear RNA auxiliary factor 2 1 , 2 U2 auxiliary factor 65 kDa subunit 3 U2 small nuclear RNA auxiliary factor 2 2 U2 small nuclear ribonucleoprotein auxiliary factor (65kD) 2 U2 snRNP auxiliary factor large subunit 2 , 3 splicing factor U2AF 65 kD subunit 2
Search outside databases for aliases for U2AF2 genePrevious GC identifer: GC19P060857
Summaries for U2AF2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for U2AF2 : U2 auxiliary factor (U2AF), comprised of a large and a small subunit, is a non-snRNP proteinrequired for the binding of U2 snRNP to the pre-mRNA branch site. This gene encodes the U2AF largesubunit which contains a sequence-specific RNA-binding region with 3 RNA recognition motifs and anArg/Ser-rich domain necessary for splicing. The large subunit binds to the polypyrimidine tract ofintrons early during spliceosome assembly. Multiple transcript variants have been detected forthis gene, but the full-length natures of only two have been determined to date. [provided byRefSeq] UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368 Function : Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of intronsearly during spliceosome assembly. Required for the export of mRNA out of the nucleus, even if themRNA is encoded by an intron-less gene
Gene Wiki entry for U2AF2
Genomic Location for U2AF2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the U2AF2 gene Entrez Gene cytogenetic band: 19q13.42 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.43 U2AF2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P060858:
(about GC identifiers )
Start:
60,857,228 bp from pter
End:
60,877,894 bp from pter
Size:
20,667 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for U2AF2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368 (See
protein sequence )Recommended Name: Splicing factor U2AF 65 kDa subunit Size : 475 amino acids; 53501 Da
Subunit : Interacts with U2AF1L4 (By similarity). Heterodimer with U2AF1. Binds unphosphorylatedSF1. Interacts with SFRS2IP
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1JMT (3D)
 1O0P (3D)
 1OPI (3D)
 1U2F (3D)
 2G4B (3D)
 2HZC (3D)
 2U2F (3D)
 
Secondary accessions : Q96HC5Alternative splicing : 2 isoforms : P26368-1 P26368-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001012496.1 NP_009210.1 ENSEMBL proteins: ENSP00000307863 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for U2AF2: Assays for U2AF2:
Protein
Domains/ Families for U2AF2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P26368 ProtoNet protein and cluster: P26368
1 Blocks protein family : IPB000504 RNA-binding region RNP-1 (RNA recognition motif) UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368 Similarity : Belongs to the splicing factor SR familySimilarity : Contains 3 RRM (RNA recognition motif) domains
Gene Function for U2AF2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001012478 Applied Biosystems Silencer ® siRNAs for U2AF2 Sigma-Aldrich siRNA for U2AF2 Sigma-Aldrich shRNA for U2AF2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001012478                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001012478                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC008740  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_007279 UniProtKB/Swiss-Prot: U2AF2_HUMAN, P26368 Function : Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of intronsearly during spliceosome assembly. Required for the export of mRNA out of the nucleus, even if themRNA is encoded by an intron-less gene
3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for U2AF2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for U2AF2 5/9 Interacting proteins for U2AF2 (P26368 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 9
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for U2AF2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for U2AF2 4 Novoseek chemical compound relationships for U2AF2 gene
About this table
Transcripts for U2AF2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001012478 Sigma-Aldrich siRNA for U2AF2 Sigma-Aldrich shRNA for U2AF2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001012478 NM_007279
REFSEQ mRNAs for U2AF2 gene (2 alternative transcripts): NM_001012478.1 NM_007279.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001012478 NM_007279
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001012478                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001012478                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC008740  
Additional cDNA sequence: AB451261.1 AB451387.1 AK311672.1 BC008740.2 BC030574.2 CR609498.1 X64044.1
19 DOTS entries : DT.316064 DT.102824787 DT.100787781 DT.121432600 DT.86847492 DT.97858884 DT.100015615 DT.100036921 DT.102824788 DT.121432571 DT.121432611 DT.99985196 DT.100036922 DT.121432584 DT.92438055 DT.95071809 DT.121432551 DT.92061826 DT.95130294
24/266 AceView cDNA sequences (see all 266
):BX461321 AI056452 BF115888 BE857957 BM768292 BE646566 BC008740 AI915105 AI161317 AA404408 BM720557 AA640188 BF063339 AI743821 BE466369 BE466493 BG333194 BF732390 AI127369 AI762438 AI807465 BC030574 AA620672 AI082328
highest scoring ESTs for U2AF2 :X64044 AA226292 AA228879 AA309119 AA368773 AA417934 AA418112 AA468878 AA505414 AA640188
Unigene Cluster for U2AF2: U2 small nuclear RNA auxiliary factor 2 Hs.528007 [show with all ESTs ] Unigene Representative Sequence: NM_007279 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for U2AF2 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b SP1 :                       -         SP2 :                              
About this scheme ECgene alternative splicing isoforms for U2AF2 1 Ensembl transcript including schematic representation : ENST00000308924
Expression for U2AF2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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U2AF2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for U2AF2 1 / 2 / 3
9 probe-sets matching U2AF2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGGGCCTGASOURCE GeneReport for Unigene cluster: Hs.528007 Expression variation in blood from EXPOLDB for U2AF2
Orthologs for U2AF2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for U2AF2 gene from 5/18 species (see all 18
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
cow (Bos taurus)
U2AF21
--
U2 small nuclear RNA auxiliary factor 2
93.56(n) 99.79(a)
507895 NM_001075336.1 NP_001068804.1
rat (Rattus norvegicus)
LOC6903721
--
similar to U2 (RNU2) small nuclear RNA auxiliary factor more
91.79(n) 100(a)
690372 XM_218195.4 XP_218195.3
mouse (Mus musculus)
U2af25
7
U2 small nuclear ribonucleoprotein auxiliary factor more
--
X64587
zebrafish (Danio rerio)
wufb73g022
--
wufb73g02
78.86(n)
322805 CF347908.1
fruit fly (Drosophila melanogaster)
U2af501
--
U2 small nuclear riboprotein auxiliary factor 50
67.49(n) 74.26(a)
32602 NM_057543.3 NP_476891.1
About this table Species with no ortholog for U2AF2 ENSEMBL Gene Tree for U2AF2 Paralogs for U2AF2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for U2AF2 gene RBM23 2 RBM39 2 PUF60 2
SNPs/Variants for U2AF2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for U2AF2 (up to first 250kb)
Disorders & Mutations for U2AF2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 191318
Medical News for U2AF2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for U2AF2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/119 PubMed articles for U2AF2 gene (see all 119
): Cloning and domain structure of the mammalian splicing factor U2AF. (PubMed id 1538748) 1, 2, 3, 4 Zamore P.D.... Green M.R. (1992) A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. (PubMed id 11551507) 1, 3, 4 Kielkopf C.L.... Burley S.K. (2001) Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65)). (PubMed id 10449418) 1, 3, 4 Ito T.... Yokoyama S. (1999) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC. (PubMed id 16097034) 3, 4 Gevaert K.... Vandekerckhove J. (2005) Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. (PubMed id 12718882) 3, 4 Selenko P.... Sattler M. (2003) Large-scale proteomic analysis of the human spliceosome. (PubMed id 12176931) 3, 4 Rappsilber J.... Mann M. (2002) Phosphorylation of splicing factor SF1 on Ser20 by cGMP-dependent protein kinase regulates spliceosome assembly. (PubMed id 10449420) 3, 4 Wang X....Robinson P.J. (1999) Sip1, a novel RS domain-containing protein essential for pre-mRNA splicing. (PubMed id 9447963) 3, 4 Zhang W.J. and Wu J.Y. (1998) Solution conformation and thermodynamic characteristics of RNA binding by the splicing factor U2AF65. (PubMed id 18842594) 1, 3 Jenkins J.L....Kielkopf C.L. (2008)
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Genome Databases showing U2AF2
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing U2AF2
(According to HUGE )
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--
Specialized Databases showing U2AF2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for U2AF2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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