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Aliases for TYMSOS Gene

Aliases for TYMSOS Gene

  • TYMS Opposite Strand 2 3
  • C18orf56 3 4
  • Chromosome 18 Open Reading Frame 56 2
  • TYMS Opposite Strand Protein 3

External Ids for TYMSOS Gene

Previous Symbols for TYMSOS Gene

  • C18orf56

Summaries for TYMSOS Gene

GeneCards Summary for TYMSOS Gene

TYMSOS (TYMS Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TYMSOS Gene

Genomics for TYMSOS Gene

Genomic Location for TYMSOS Gene

Start:
641,320 bp from pter
End:
658,340 bp from pter
Size:
17,021 bases
Orientation:
Minus strand

Genomic View for TYMSOS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TYMSOS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TYMSOS Gene

No data available for Regulatory Elements for TYMSOS Gene

Proteins for TYMSOS Gene

  • Protein details for TYMSOS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAI1-TYMOS_HUMAN
    Recommended name:
    TYMS opposite strand protein
    Protein Accession:
    Q8TAI1
    Secondary Accessions:
    • A8K1S1

    Protein attributes for TYMSOS Gene

    Size:
    123 amino acids
    Molecular mass:
    13402 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TYMSOS Gene

Proteomics data for TYMSOS Gene at MOPED

Post-translational modifications for TYMSOS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TYMSOS Gene

REFSEQ proteins:

No data available for DME Specific Peptides for TYMSOS Gene

Domains for TYMSOS Gene

Protein Domains for TYMSOS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TYMSOS: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TYMSOS Gene

Function for TYMSOS Gene

Gene Ontology (GO) - Molecular Function for TYMSOS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with TYMSOS: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TYMSOS Gene

Localization for TYMSOS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TYMSOS Gene

Pathways for TYMSOS Gene

SuperPathways for TYMSOS Gene

No Data Available

Gene Ontology (GO) - Biological Process for TYMSOS Gene

None

No data available for Pathways by source for TYMSOS Gene

Compounds for TYMSOS Gene

(3) PharmGKB related drug/compound annotations for TYMSOS Gene

Drug/compound Annotation
methotrexate CA
pemetrexed CA
raltitrexed CA
genes like me logo Genes that share compounds with TYMSOS: view

Transcripts for TYMSOS Gene

mRNA/cDNA for TYMSOS Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TYMSOS Gene

No ASD Table

Relevant External Links for TYMSOS Gene

GeneLoc Exon Structure for
TYMSOS
ECgene alternative splicing isoforms for
TYMSOS

Expression for TYMSOS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TYMSOS Gene

Orthologs for TYMSOS Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for TYMSOS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C18orf56 36
  • 95 (a)
OneToOne
Species with no ortholog for TYMSOS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TYMSOS Gene

ENSEMBL:
Gene Tree for TYMSOS (if available)
TreeFam:
Gene Tree for TYMSOS (if available)

Paralogs for TYMSOS Gene

No data available for Paralogs for TYMSOS Gene

Variants for TYMSOS Gene

Sequence variations from dbSNP and Humsavar for TYMSOS Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs472925 -- 655,047(-) aaggc(A/G)tgagc intron-variant
rs483599 -- 651,087(-) ATACT(C/G)TCATT intron-variant
rs491246 -- 655,052(-) gatta(A/C)aggca intron-variant
rs516864 -- 651,824(-) tggac(A/C)acatg intron-variant
rs523230 -- 653,847(-) caaga(C/T)atctg intron-variant

Relevant External Links for TYMSOS Gene

HapMap Linkage Disequilibrium report
TYMSOS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TYMSOS Gene

Disorders for TYMSOS Gene

No disorders were found for TYMSOS Gene.

No data available for UniProtKB/Swiss-Prot for TYMSOS Gene

Publications for TYMSOS Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  4. Protein microarray analysis identifies human cellular prion protein interactors. (PMID: 18482256) Satoh J. … Tabunoki H. (Neuropathol. Appl. Neurobiol. 2009) 3
  5. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3

Products for TYMSOS Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TYMSOS
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TYMSOS
    • Block miRNA regulation of TYMSOS using miScript Target Protectors

    Sources for TYMSOS Gene

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