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Aliases & Descriptions for TYMS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.1.1.45 3 | | HST422 2 | | HsT422 1 | | MGC88736 2 | | TMS 1, 2, 5 | | TS 2, 3, 5 | | TSase 2, 3 | | Tsase 1 |
| | | Descriptions |
|---|
| thymidylate synthase 2 | | thymidylate synthetase 2 |
|
| | Search outside databases for aliases for TYMS genePrevious GC identifers: GC18U990034 GC18P000645 |
Summaries for TYMS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TYMS: Thymidylate synthase catalyzes the methylation of deoxyuridylate to deoxythymidylate using 5,10-methylenetetrahydrofolate (methylene-THF) as a cofactor. This function maintains the dTMP (thymidine-5-prime monophosphate) pool critical for DNA replication and repair. The enzyme has been of interest as a target for cancer chemotherapeutic agents. It is considered to be the primary site of action for 5-fluorouracil, 5-fluoro-2-prime-deoxyuridine, and some folate analogs. Expression of this gene and that of a naturally occuring antisense transcript rTSalpha (GeneID:55556) vary inversely when cell-growth progresses from late-log to plateau phase. [provided by RefSeq] Gene Wiki entry for TYMS (Thymidylate_synthase) |
Genomic Location for TYMS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TYMS gene 
Entrez Gene cytogenetic band: 18p11.32 Ensembl cytogenetic band: 18p11.32 HGNC cytogenetic band: 18p11.31-p11.21TYMS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18P000647:
(about GC identifiers)
Start:
|
647,619 bp from pter |
End:
|
663,492 bp from pter |
Size:
|
15,874 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000018.8 NT_010859.14
| Proteins for TYMS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TYSY_HUMAN, P04818 (See
protein sequence)Recommended Name: Thymidylate synthase Size: 313 amino acids; 35716 Da
Subunit: Homodimer
PDB structures from and Proteopedia :1HVY (3D)
 1HW3 (3D)
 1HW4 (3D)
 1HZW (3D)
 1I00 (3D)
 1JU6 (3D)
 1JUJ (3D)
 1YPV (3D)
 2ONB (3D)
 2RD8 (3D)
 2RDA (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001062.1
ENSEMBL proteins: ENSP00000315644 ENSP00000314727 ENSP00000314902
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for TYMS: Assays for TYMS: | Protein
Domains/ Families for TYMS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P04818
ProtoNet protein and cluster: P04818 1 Blocks protein family: IPB000398 Thymidylate synthase
UniProtKB/Swiss-Prot: TYSY_HUMAN, P04818Similarity: Belongs to the thymidylate synthase family | Gene Function for TYMS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001071
Applied Biosystems Silencer® siRNAs for TYMS
Sigma-Aldrich siRNA and siRNA Panels for TYMS  Sigma-Aldrich shRNA Panels and shRNA for TYMS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001071                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001071                                  untagged cDNA clone in CMV expression vector: NM_001071 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001071
UniProtKB/Swiss-Prot: TYSY_HUMAN, P04818Catalytic activity: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMPEnzyme Number (IUBMB): EC 2.1.1.45 Genatlas biochemistry entry for TYMS:thymidylate synthetase,pyrimidine biosynthetic pathway3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004799 | thymidylate synthase activity |
IEA | -- | | GO:0008168 | methyltransferase activity |
IEA | -- | | GO:0016740 | transferase activity |
IEA | -- | About this table | Pathways & Interactions for TYMS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for TYMS (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: TYSY_HUMAN, P04818Pathway: Pyrimidine metabolism; dTTP biosynthesis Gene Network CentralTM Interacting Genes and Proteins Network for TYMS 
5/58 Interacting proteins for TYMS (ENSP000003156443) via UniProtKB, MINT, and/or STRING (see all 58
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for TYMS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for TYMS: Inhibitor |
Browse Tocris compounds for TYMS 10/24 Novoseek chemical compound relationships for TYMS gene (see all 24
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| 5-fluoro-2'-deoxyuridine-5'-monophosphate |
94.29 |
126 |
12167486 (10), 1557655 (4), 16550002 (3), 7556218 (3) (see all 48) |
| 2'-deoxyuridine-5-monophosphate |
93.34 |
110 |
15068368 (4), 8939755 (3), 8399157 (2), 9053905 (2) (see all 46) |
| glycinamide ribonucleotide |
92.11 |
80 |
15655941 (2), 10739873 (2), 2106831 (2), 9420020 (1) (see all 60) |
| dihydrofolate |
91.02 |
275 |
1825652 (5), 8486425 (3), 8385896 (3), 15353304 (2) (see all 99) |
| ag 331 |
89.43 |
11 |
8624289 (1), 16612649 (1), 10598559 (1), 10606255 (1) (see all 7) |
| ch2h4folate |
87.98 |
38 |
12167486 (4), 9383465 (4), 16075306 (3), 8939755 (2) (see all 13) |
| futp |
87.56 |
7 |
1707544 (1), 9494066 (1), 18463958 (1), 1721719 (1) |
| ly309887 |
84.61 |
9 |
16352313 (2), 9118464 (1), 9679969 (1), 10598555 (1) (see all 6) |
| thymidine |
84.43 |
472 |
16568206 (4), 10509749 (3), 8476214 (2), 10956398 (2) (see all 99) |
| nb 1011 |
83.57 |
26 |
11914638 (6), 11179438 (4), 12853888 (2), 12859954 (2) (see all 6) |
About this table
10/16 PharmGKB drug compound relationships for TYMS gene (see all 16
)About this table
|
Transcripts for TYMS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001071
Sigma-Aldrich siRNA and siRNA Panels for TYMS  Sigma-Aldrich shRNA Panels and shRNA for TYMS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001071 REFSEQ mRNAs for TYMS gene: NM_001071.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001071               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001071                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001071                                  untagged cDNA clone in CMV expression vector: NM_001071  Additional cDNA sequence: AB062290.1 AB077207.1 AB077208.1 AK223372.1 AK292620.1 AK314140.1 BC002567.2 BC013919.1 BC018858.2 BC083512.1 BT006811.1 CR595729.1 CR600251.1 CR601110.1 CR601528.1 CR605696.1 CR607354.1 CR607878.1 CR608281.1 CR611174.1 CR612332.1 CR612901.1 CR616172.1 CR617359.1 CR617715.1 CR618525.1 CR625557.1 X02308.1 23 DOTS entries: DT.91987769 DT.95139599 DT.91940417 DT.100887990 DT.121095554 DT.75149969 DT.121095715 DT.100887966 DT.121095580 DT.95263539 DT.100887988 DT.100887995 DT.121095668 DT.121095691 DT.121095704 DT.95249706 DT.100805334 DT.100887972 DT.100887984 DT.108596 DT.209162 DT.91833876 DT.92454718 24/409 AceView cDNA sequences (see all 409
):CR601110 BG286957 CR616172 AL556369 CR607354 CR611174 CK724974 BQ771909 CR607878 CR625557 CR612332 AL562750 BQ439242 CR601528 BQ057866 CR600251 CR617359 BM904778 BQ425417 BU632016 BQ669537 CA422520 CA446584 AB077208
highest scoring ESTs for TYMS:X02308 AA093053 AA128870 AA134538 AA400865 AA433840 AA564837 AA614536 AA678389 AA678579 Unigene Cluster for TYMS: Thymidylate synthetase Hs.592338 [show with all ESTs]Unigene Representative Sequence: BQ056428
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000323274
ENST00000323224
ENST00000323250
|
Expression for TYMS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TYMS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TYMS
1 / 2 / 3 5 probe-sets matching TYMS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATGTAGAGTG
SOURCE GeneReport for Unigene cluster: Hs.592338
Expression variation in blood from EXPOLDB for TYMS |
Orthologs for TYMS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TYMS gene from 5/27 species (see all 27
)
About this table Species with no ortholog for TYMS
ENSEMBL Gene Tree for TYMS | Paralogs for TYMS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for TYMS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TYMS (up to first 250kb)
|
Disorders & Mutations for TYMS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 188350
10/95 Novoseek disease relationships for TYMS gene (see all 95
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| colorectal cancer |
84.84 |
525 |
12022983 (5), 15197779 (5), 15770397 (5), 9951876 (4) (see all 99) |
| colon cancer |
76.31 |
159 |
10914714 (5), 17934851 (4), 10100718 (3), 16284371 (3) (see all 84) |
| gastric cancer |
69.93 |
217 |
11161374 (4), 17854149 (4), 19102414 (4), 10965817 (4) (see all 74) |
| colon carcinoma |
68.66 |
51 |
12525515 (3), 10791849 (3), 16609021 (2), 10785598 (2) (see all 28) |
| tumors |
68.66 |
920 |
9048835 (10), 11179438 (8), 15309465 (7), 14576935 (6) (see all 99) |
| colorectal carcinoma |
68.13 |
77 |
11832164 (4), 15500737 (4), 11131679 (4), 15751630 (3) (see all 34) |
| colorectal tumors |
66.04 |
27 |
16391809 (3), 12576451 (2), 10778957 (2), 11249590 (1) (see all 17) |
| cancer |
63.18 |
389 |
9126308 (5), 7647337 (5), 19155291 (5), 11410778 (4) (see all 99) |
| solid tumor |
60.84 |
30 |
14612954 (2), 19047127 (2), 11249590 (1), 15359285 (1) (see all 23) |
| colon adenocarcinoma |
57.14 |
8 |
11589301 (1), 8060136 (1), 16568206 (1), 8216262 (1) (see all 7) |
About this table
8 PharmGKB disease relationships for TYMS geneAbout this table
Human Gene Mutation Database: TYMS Genetic Association Database: TYMS Human Genome Epidemiology Navigator: TYMS (183 documents)
|
Medical News for TYMS(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for TYMS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1328 PubMed articles for TYMS gene (see all 1328
):- A multivariate analysis of genomic polymorphisms: prediction of clinical outcome to 5-FU/oxaliplatin combination chemotherapy in refractory colorectal cancer. (PubMed id 15213713)1, 3, 6, 7 Stoehlmacher J....Lenz H.J. (2004)
- The role of genetic factors in the development of hyperhomocysteinemia. (PubMed id 14656021)1, 3, 6, 7 Geisel J....Herrmann W. (2003)
- Pharmacogenetics of outcome in children with acute lymphoblastic leukemia. (PubMed id 15713801)3, 6, 7 Rocha J.C....Relling M.V. (2005)
- Associations between polymorphisms in the thymidylate synthase and serine hydroxymethyltransferase genes and susceptibility to malignant lymphoma. (PubMed id 12604405)1, 3, 7 Hishida A....Tajima K. (2003)
- Polymorphisms in the thymidylate synthase and serine hydroxymethyltransferase genes and risk of adult acute lymphocytic leukemia. (PubMed id 11986237)1, 6, 7 Skibola C.F....Morgan G.J. (2002)
- Thymidylate synthase: a novel genetic determinant of plasma homocysteine and folate levels. (PubMed id 12215845)3, 6, 7 Trinh B.N....Laird P.W. (2002)
- Polymorphisms of the repeated sequences in the enhancer region of the thymidylate synthase gene promoter may predict downstaging after preoperative chemoradiation in rectal cancer. (PubMed id 11251009)3, 6, 7 Villafranca E....Brugarolas A. (2001)
- Association of thymidylate synthase gene polymorphism with its mRNA and protein expression and with prognosis in gastric cancer. (PubMed id 12530000)1, 3, 6 Ishida Y....Watanabe G. (2002)
- Thymidylate synthase gene polymorphism predicts toxicity in colorectal cancer patients receiving 5-fluorouracil-based chemotherapy. (PubMed id 15355920)1, 3, 6 Lecomte T....Laurent-Puig P. (2004)
- Prognostic role of thymidylate synthase polymorphisms in gastric cancer patients treated with surgery and adjuvant chemotherapy. (PubMed id 15897576)1, 3, 6 Kawakami K....Magnani M. (2005)
|
Search for TYMS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TYMS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TYMS
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TYMS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TYMS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TYMS:

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| Antibodies & Assays for TYMS  (Thymidylate Synthase) |
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Incremental update: 13 Oct 2009
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