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Aliases for TXNL1 Gene

Aliases for TXNL1 Gene

  • Thioredoxin Like 1 2 3 5
  • 32 KDa Thioredoxin-Related Protein 3 4
  • Thioredoxin-Like 1 2 3
  • TRP32 3 4
  • TXNL 3 4
  • Txl 3 4
  • Epididymis Secretory Protein Li 114 3
  • Thioredoxin-Related 32 KDa Protein 3
  • Thioredoxin-Related Protein 1 3
  • Thioredoxin-Like, 32kDa 2
  • Thioredoxin-Like 2
  • HEL-S-114 3
  • TXL-1 3
  • 32kD 2

External Ids for TXNL1 Gene

Previous HGNC Symbols for TXNL1 Gene

  • TXNL

Previous GeneCards Identifiers for TXNL1 Gene

  • GC18M052420
  • GC18M052421
  • GC18M054264
  • GC18M050981

Summaries for TXNL1 Gene

GeneCards Summary for TXNL1 Gene

TXNL1 (Thioredoxin Like 1) is a Protein Coding gene. Diseases associated with TXNL1 include thymus adenocarcinoma. GO annotations related to this gene include protein disulfide oxidoreductase activity and disulfide oxidoreductase activity. An important paralog of this gene is TXN.

UniProtKB/Swiss-Prot for TXNL1 Gene

  • Active thioredoxin with a redox potential of about -250 mV.

Gene Wiki entry for TXNL1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TXNL1 Gene

Genomics for TXNL1 Gene

Regulatory Elements for TXNL1 Gene

Promoters for TXNL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TXNL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TXNL1 Gene

Chromosome:
18
Start:
56,597,208 bp from pter
End:
56,651,600 bp from pter
Size:
54,393 bases
Orientation:
Minus strand

Genomic View for TXNL1 Gene

Genes around TXNL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TXNL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TXNL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TXNL1 Gene

Proteins for TXNL1 Gene

  • Protein details for TXNL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43396-TXNL1_HUMAN
    Recommended name:
    Thioredoxin-like protein 1
    Protein Accession:
    O43396

    Protein attributes for TXNL1 Gene

    Size:
    289 amino acids
    Molecular mass:
    32251 Da
    Quaternary structure:
    • Component of the 19S regulatory cap of the 26S proteasome. Interacts with PSMD14/RPN11. Interacts with, and reduces EEF1A1.

    Three dimensional structures from OCA and Proteopedia for TXNL1 Gene

neXtProt entry for TXNL1 Gene

Proteomics data for TXNL1 Gene at MOPED

Post-translational modifications for TXNL1 Gene

  • Ubiquitination at Lys 5, Lys 28, Lys 102, Lys 104, Lys 181, and Lys 279
  • Modification sites at PhosphoSitePlus

Other Protein References for TXNL1 Gene

Antibody Products

No data available for DME Specific Peptides for TXNL1 Gene

Domains & Families for TXNL1 Gene

Suggested Antigen Peptide Sequences for TXNL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O43396

UniProtKB/Swiss-Prot:

TXNL1_HUMAN :
  • Contains 1 PITH domain.
Domain:
  • Contains 1 PITH domain.
  • Contains 1 thioredoxin domain.
genes like me logo Genes that share domains with TXNL1: view

No data available for Gene Families for TXNL1 Gene

Function for TXNL1 Gene

Molecular function for TXNL1 Gene

UniProtKB/Swiss-Prot Function:
Active thioredoxin with a redox potential of about -250 mV.
genes like me logo Genes that share phenotypes with TXNL1: view

Animal Model Products

miRNA for TXNL1 Gene

miRTarBase miRNAs that target TXNL1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TXNL1 Gene

Localization for TXNL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TXNL1 Gene

Cytoplasm. Nucleus. Note=At least 85% of the cellular TXNL1 is proteasome-associated.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TXNL1 Gene COMPARTMENTS Subcellular localization image for TXNL1 gene
Compartment Confidence
extracellular 5
cytosol 4
mitochondrion 4
nucleus 4
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for TXNL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000502 proteasome complex IEA --
GO:0005737 cytoplasm IDA 9668102
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with TXNL1: view

Pathways & Interactions for TXNL1 Gene

SuperPathways for TXNL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TXNL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding IBA --
GO:0034599 cellular response to oxidative stress IBA --
genes like me logo Genes that share ontologies with TXNL1: view

No data available for Pathways by source and SIGNOR curated interactions for TXNL1 Gene

Drugs & Compounds for TXNL1 Gene

(1) Additional Compounds for TXNL1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with TXNL1: view

Transcripts for TXNL1 Gene

Unigene Clusters for TXNL1 Gene

Thioredoxin-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TXNL1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13
SP1: - -
SP2: -
SP3:
SP4:
SP5: -
SP6: -

Relevant External Links for TXNL1 Gene

GeneLoc Exon Structure for
TXNL1
ECgene alternative splicing isoforms for
TXNL1

Expression for TXNL1 Gene

mRNA expression in normal human tissues for TXNL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TXNL1 Gene



SOURCE GeneReport for Unigene cluster for TXNL1 Gene Hs.114412

mRNA Expression by UniProt/SwissProt for TXNL1 Gene

O43396-TXNL1_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with TXNL1: view

Protein tissue co-expression partners for TXNL1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Protein differential expression in normal tissues for TXNL1 Gene

Orthologs for TXNL1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TXNL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TXNL1 36
  • 100 (a)
OneToOne
TXNL1 35
  • 99.88 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia TXNL1 36
  • 100 (a)
OneToOne
TXNL1 35
  • 94.35 (n)
  • 99.31 (a)
dog
(Canis familiaris)
Mammalia TXNL1 35
  • 95.85 (n)
  • 99.31 (a)
TXNL1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Txnl1 16
Txnl1 35
  • 92.73 (n)
  • 98.62 (a)
Txnl1 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TXNL1 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TXNL1 36
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Txnl1 35
  • 92.39 (n)
  • 98.96 (a)
chicken
(Gallus gallus)
Aves TXNL1 35
  • 85.01 (n)
  • 91.7 (a)
TXNL1 36
  • 92 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TXNL1 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.5938 35
txnl1 35
  • 78.43 (n)
  • 84.08 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10705 35
zebrafish
(Danio rerio)
Actinopterygii txnl1 35
  • 74.74 (n)
  • 80.62 (a)
zgc55368 35
txnl1 36
  • 81 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005462 35
  • 51.52 (n)
  • 49.3 (a)
fruit fly
(Drosophila melanogaster)
Insecta Txl 35
  • 53.77 (n)
  • 49.83 (a)
Txl 36
  • 50 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y54E10A.3 36
  • 45 (a)
OneToMany
Y55F3AR.2 36
  • 27 (a)
OneToMany
Y54E10A.3 35
  • 53.02 (n)
  • 46.01 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TRX1 36
  • 32 (a)
ManyToMany
TRX2 36
  • 27 (a)
ManyToMany
TRX3 36
  • 22 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G04780 35
  • 53.09 (n)
  • 45.68 (a)
rice
(Oryza sativa)
Liliopsida Os03g0795500 35
  • 51.28 (n)
  • 40.83 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU02520 35
  • 46.67 (n)
  • 33.04 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes txl1 35
  • 50.61 (n)
  • 41.22 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2149 36
  • 44 (a)
OneToOne
Species with no ortholog for TXNL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TXNL1 Gene

ENSEMBL:
Gene Tree for TXNL1 (if available)
TreeFam:
Gene Tree for TXNL1 (if available)

Paralogs for TXNL1 Gene

Paralogs for TXNL1 Gene

(2) SIMAP similar genes for TXNL1 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for TXNL1 Gene

genes like me logo Genes that share paralogs with TXNL1: view

Variants for TXNL1 Gene

Sequence variations from dbSNP and Humsavar for TXNL1 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs483405 -- 56,636,947(+) CATCA(A/C)AAAAT intron-variant
rs540500 -- 56,635,296(-) GGATC(C/T)CTGCT intron-variant
rs602841 -- 56,613,129(+) GCCAC(A/C)ACACC intron-variant
rs591783 -- 56,603,297(-) tattt(A/T)aaaaa intron-variant
rs611549 -- 56,613,054(-) GAGAC(C/T)AGCCT intron-variant

Variation tolerance for TXNL1 Gene

Residual Variation Intolerance Score: 37.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.58; 12.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TXNL1 Gene

HapMap Linkage Disequilibrium report
TXNL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TXNL1 Gene

Disorders for TXNL1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TXNL1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
thymus adenocarcinoma
  • adenocarcinoma of the thymus
- elite association - COSMIC cancer census association via MalaCards
Search TXNL1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TXNL1

Genetic Association Database (GAD)
TXNL1
Human Genome Epidemiology (HuGE) Navigator
TXNL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TXNL1
genes like me logo Genes that share disorders with TXNL1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TXNL1 Gene

Publications for TXNL1 Gene

  1. Purification, molecular cloning, and characterization of TRP32, a novel thioredoxin-related mammalian protein of 32 kDa. (PMID: 9668102) Lee K.-K. … Yonehara S. (J. Biol. Chem. 1998) 2 3 4 23 67
  2. Molecular cloning and expression of a cDNA encoding a human thioredoxin-like protein. (PMID: 9473519) Miranda-Vizuete A. … Spyrou G. (Biochem. Biophys. Res. Commun. 1998) 2 3 23
  3. Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein. (PMID: 20455272) Goroncy A.K. … Yokoyama S. (Proteins 2010) 3 23
  4. Thioredoxin Txnl1/TRP32 is a redox-active cofactor of the 26 S proteasome. (PMID: 19349277) Andersen K.M. … Hartmann-Petersen R. (J. Biol. Chem. 2009) 3 23
  5. Characterization of human thioredoxin-like-1: potential involvement in the cellular response against glucose deprivation. (PMID: 16438969) JimAcnez A. … Miranda-Vizuete A. (FEBS Lett. 2006) 3 23

Products for TXNL1 Gene

Sources for TXNL1 Gene

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