Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TXNDC9 Gene

Aliases for TXNDC9 Gene

  • Thioredoxin Domain Containing 9 2 3
  • ATP-Binding Protein Associated With Cell Differentiation 3 4
  • Protein 1-4 3 4
  • APACD 3 4
  • ATP Binding Protein Associated With Cell Differentiation 3
  • PHLP3 3

External Ids for TXNDC9 Gene

Previous GeneCards Identifiers for TXNDC9 Gene

  • GC02M099557
  • GC02M099394
  • GC02M099935
  • GC02M093700
  • GC02M099921

Summaries for TXNDC9 Gene

Entrez Gene Summary for TXNDC9 Gene

  • The protein encoded by this gene is a member of the thioredoxin family. The exact function of this protein is not known but it is associated with cell differentiation. [provided by RefSeq, Jul 2008]

GeneCards Summary for TXNDC9 Gene

TXNDC9 (Thioredoxin Domain Containing 9) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TXNDC9 Gene

  • Significantly diminishes the chaperonin TCP1 complex ATPase activity, thus negatively impacts protein folding, including that of actin or tubulin.

Gene Wiki entry for TXNDC9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TXNDC9 Gene

Genomics for TXNDC9 Gene

Regulatory Elements for TXNDC9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TXNDC9 Gene

Chromosome:
2
Start:
99,318,982 bp from pter
End:
99,340,702 bp from pter
Size:
21,721 bases
Orientation:
Minus strand

Genomic View for TXNDC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TXNDC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TXNDC9 Gene

Proteins for TXNDC9 Gene

  • Protein details for TXNDC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14530-TXND9_HUMAN
    Recommended name:
    Thioredoxin domain-containing protein 9
    Protein Accession:
    O14530
    Secondary Accessions:
    • B2R9G8
    • D3DVI4
    • Q53HG4
    • Q53RV8
    • Q6NSF5
    • Q8TB70
    • Q9BRU6

    Protein attributes for TXNDC9 Gene

    Size:
    226 amino acids
    Molecular mass:
    26534 Da
    Quaternary structure:
    • Forms ternary complexes with the chaperonin TCP1 complex, spanning the cylindrical chaperonin cavity and contacting at least 2 subunits

    Alternative splice isoforms for TXNDC9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TXNDC9 Gene

Proteomics data for TXNDC9 Gene at MOPED

Post-translational modifications for TXNDC9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TXNDC9 Gene

Antibody Products

No data available for DME Specific Peptides for TXNDC9 Gene

Domains & Families for TXNDC9 Gene

Protein Domains for TXNDC9 Gene

Suggested Antigen Peptide Sequences for TXNDC9 Gene

Graphical View of Domain Structure for InterPro Entry

O14530

UniProtKB/Swiss-Prot:

TXND9_HUMAN :
  • Contains 1 thioredoxin domain.
Domain:
  • Contains 1 thioredoxin domain.
genes like me logo Genes that share domains with TXNDC9: view

No data available for Gene Families for TXNDC9 Gene

Function for TXNDC9 Gene

Molecular function for TXNDC9 Gene

UniProtKB/Swiss-Prot Function:
Significantly diminishes the chaperonin TCP1 complex ATPase activity, thus negatively impacts protein folding, including that of actin or tubulin.

Gene Ontology (GO) - Molecular Function for TXNDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16169070
genes like me logo Genes that share ontologies with TXNDC9: view

Phenotypes for TXNDC9 Gene

GenomeRNAi human phenotypes for TXNDC9:
genes like me logo Genes that share phenotypes with TXNDC9: view

Animal Model Products

miRNA for TXNDC9 Gene

miRTarBase miRNAs that target TXNDC9

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for TXNDC9 Gene

Localization for TXNDC9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TXNDC9 Gene

Cytoplasm. Nucleus. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Midbody. Note=Co-localizes with beta-tubulin in the centrosome. {ECO:0000250 UniProtKB:Q9CQ79}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TXNDC9 Gene COMPARTMENTS Subcellular localization image for TXNDC9 gene
Compartment Confidence
cytoskeleton 2
cytosol 2
nucleus 2
endoplasmic reticulum 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TXNDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005813 centrosome IEA --
GO:0030496 midbody IEA --
genes like me logo Genes that share ontologies with TXNDC9: view

Pathways & Interactions for TXNDC9 Gene

SuperPathways for TXNDC9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TXNDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0045454 cell redox homeostasis IEA --
genes like me logo Genes that share ontologies with TXNDC9: view

No data available for Pathways by source and SIGNOR curated interactions for TXNDC9 Gene

Drugs & Compounds for TXNDC9 Gene

No Compound Related Data Available

Transcripts for TXNDC9 Gene

Unigene Clusters for TXNDC9 Gene

Thioredoxin domain containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TXNDC9 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1: - - -
SP2: - - - - -
SP3: - -
SP4: - - -
SP5: - -
SP6: - - - - -
SP7:

Relevant External Links for TXNDC9 Gene

GeneLoc Exon Structure for
TXNDC9
ECgene alternative splicing isoforms for
TXNDC9

Expression for TXNDC9 Gene

mRNA expression in normal human tissues for TXNDC9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TXNDC9 Gene

This gene is overexpressed in Breast (32.2) and Fetal Brain (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TXNDC9 Gene



SOURCE GeneReport for Unigene cluster for TXNDC9 Gene Hs.536122

genes like me logo Genes that share expression patterns with TXNDC9: view

Protein tissue co-expression partners for TXNDC9 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TXNDC9 Gene

Orthologs for TXNDC9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TXNDC9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TXNDC9 35
  • 92.85 (n)
  • 93.61 (a)
TXNDC9 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TXNDC9 35
  • 93.46 (n)
  • 95.43 (a)
TXNDC9 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Txndc9 35
  • 85.54 (n)
  • 89.5 (a)
Txndc9 16
Txndc9 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TXNDC9 35
  • 99.85 (n)
  • 99.56 (a)
TXNDC9 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Txndc9 35
  • 85.24 (n)
  • 88.58 (a)
oppossum
(Monodelphis domestica)
Mammalia TXNDC9 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TXNDC9 36
  • 92 (a)
OneToOne
chicken
(Gallus gallus)
Aves TXNDC9 35
  • 80.67 (n)
  • 82.19 (a)
TXNDC9 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TXNDC9 36
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.2720 35
txndc9 35
  • 79 (n)
  • 81.74 (a)
African clawed frog
(Xenopus laevis)
Amphibia apacd-prov 35
zebrafish
(Danio rerio)
Actinopterygii txndc9 35
  • 70.68 (n)
  • 75.93 (a)
wufb15e07 35
txndc9 36
  • 74 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003485 35
  • 54.67 (n)
  • 53.5 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4511 35
  • 56.98 (n)
  • 53.69 (a)
CG4511 36
  • 53 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea tag-170 35
  • 52.33 (n)
  • 44.69 (a)
tag-170 36
  • 43 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PLP1 36
  • 29 (a)
OneToOne
PLP1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons TXND9 35
  • 57.95 (n)
  • 52.84 (a)
rice
(Oryza sativa)
Liliopsida Os08g0250700 35
  • 52.14 (n)
  • 49.16 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4777 36
  • 58 (a)
OneToOne
Species with no ortholog for TXNDC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TXNDC9 Gene

ENSEMBL:
Gene Tree for TXNDC9 (if available)
TreeFam:
Gene Tree for TXNDC9 (if available)

Paralogs for TXNDC9 Gene

Pseudogenes.org Pseudogenes for TXNDC9 Gene

genes like me logo Genes that share paralogs with TXNDC9: view

No data available for Paralogs for TXNDC9 Gene

Variants for TXNDC9 Gene

Sequence variations from dbSNP and Humsavar for TXNDC9 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs14573 -- 99,319,296(-) CGCAA(A/T)ACTGC utr-variant-3-prime
rs6706425 -- 99,325,212(+) aaaca(C/T)tgcat intron-variant
rs6706654 -- 99,325,366(+) TGAGT(C/T)AATTT intron-variant
rs6708861 -- 99,330,771(+) ACCCT(C/T)GTGGA intron-variant
rs6709085 -- 99,330,926(+) AAGAC(C/T)CTCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TXNDC9 Gene

Variant ID Type Subtype PubMed ID
nsv874699 CNV Gain 21882294
nsv524466 CNV Loss 19592680

Variation tolerance for TXNDC9 Gene

Residual Variation Intolerance Score: 46.73% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.22; 52.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TXNDC9 Gene

HapMap Linkage Disequilibrium report
TXNDC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TXNDC9 Gene

Disorders for TXNDC9 Gene

Relevant External Links for TXNDC9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TXNDC9
genes like me logo Genes that share disorders with TXNDC9: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TXNDC9 Gene

Publications for TXNDC9 Gene

  1. Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators during TGF-beta-Induced epithelial-mesenchymal transition. (PMID: 19118450) Keshamouni V.G. … Omenn G.S. (J. Proteome Res. 2009) 23 67
  2. Predicting helix-helix interactions from residue contacts in membrane proteins. (PMID: 19244388) Lo A. … Hsu W.L. (Bioinformatics 2009) 23 67
  3. [Herbs for calming liver and suppressing liver-yang in treatment of migraine with hyperactive liver-yang syndrome and its effects on lymphocyte protein expression: a randomized controlled trial]. (PMID: 19134454) Zhong G.W. … Zhang L. (Zhong Xi Yi Jie He Xue Bao 2009) 23 67
  4. Proteome responses to stable hepatitis B virus transfection and following interferon alpha treatment in human liver cell line HepG2. (PMID: 19242931) Wang J. … Wei L. (Proteomics 2009) 23 67
  5. [Proteomic analysis of Bifidobacteria longum strain NCC2705 grown on lactose and glucose]. (PMID: 19149159) He X. … Yuan J. (Wei Sheng Wu Xue Bao 2008) 23 67

Products for TXNDC9 Gene

Sources for TXNDC9 Gene

Back to Top

Content